Family name: serbact

Multiple structure alignment




1hpga.atm
2alp.atm
2sfa.atm
2sga.atm
3sgbe.atm

 		 --------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
 123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123
 --VLGGGAIYG-GGSRCSAAFNVTKG-GARYFVTAGHCTN--ISANWSASS-GGSVVGVREGTSFPTNDYGIVRYT-DG--SS-PAGTVDLYNGSTQDISSAANAVVGQAIKKSGSTTKVTSGTVTAVNVTVNYGD-GPVYNMVRTTACSAGGDSGGAHFA-GSVALGIHSGSSG-----C--SGTA---GSAIHQPVTEALSAYGVTVY--
 ANIVGGIEYSINNASLCSVGFSVTRG-ATKGFVTAGHCGTVN--ATARIG---GAVVGTFAARVFPGNDRAWVSLTSA---QT-LLPRVANG-SSFVTVRGSTEAAVGAAVCRSGRTTGYQCGTITAKNVTANYAE-GAVRGLTQGNACMGRGDSGGSWITSAGQAQGVMSGGNVQSNGNNCGI--PASQRSSLFERLQPILSQYGLSLVTG
 --IAGGEAIYAAGGGRCSLGFNVRSSSGATYALTAGHCTE--IASTWYTNSGQTSLLGTRAGTSFPGNDYGLIRHS-N---ASAADGRVYLYNGSYRDITGAGNAYVGQTVQRSGSTTGLHSGRVTGLNATVNYGGGDIVSGLIQTNVCAEPGDSGGALFA-GSTALGLTSGGSG-----NCRT--G---GTTFFQPVTEALSAYGVSIL--
 --IAGGEAITT-GGSRCSLGFNVSVN-GVAHALTAGHCTN--ISASWS--------IGTRTGTSFPNNDYGIIRHS-N---PAAADGRVYLYNGSYQDITTAGNAFVGQAVQRSGSTTGLRSGSVTGLNATVNYGSSGIVYGMIQTNVCAQPGDSGGSLFA-GSTALGLTSGGSG-----NCRT--G---GTTFYQPVTEALSAYGATVL--
 --ISGGDAIYS-STGRCSLGFNVRSG-STYYFLTAGHCTD--GATTWWANSARTTVLGTTSGSSFPNNDYGIVRYT-NTTI--PKDGTVG-----GQDITSAANATVGMAVTRRGSTTGTHSGSVTALNATVNYGGGDVVYGMIRTNVCAEPGDSGGPLYS-GTRAIGLTSGGSG-----NCSS--G---GTTFFQPVTEALVAYGVSVY--
Download the alignment in fasta format
Columns in green are common core regions (i.e., columns with no gaps and the maximum pairwise residue distance < 4Å).

Metrics of the alignment

Lcore ccRMSD ccTM-score Lali RMSD TM-score
164 0.81 0.869 178 0.94 0.937

Visualization of the alignment




    Total 5 input structures:      1hpga.atm 2alp.atm 2sfa.atm 2sga.atm 3sgbe.atm

    Click on the corresponding buttons to show different regions (the default show is for the common core region).

    

    






    Download the superimposed structure file


Reference

  • R. Dong, S. Pan, Z. Peng, Y. Zhang and J. Yang, mTM-align: a server for fast protein structure database searching and multiple protein structure alignment, submitted, 2017.
  • R. Dong, Z. Peng, Y. Zhang and J. Yang, mTM-align: an algorithm for fast and accurate multiple protein structure alignment, Bioinformatics, 2017 (in press).