Multiple structure alignment

1avba.atm 1lec.atm 1len.atm 1lgc.atm 1loe.atm 1lte.atm 1lu1.atm 1sbf.atm 1wbla.atm 2ltn.atm 2pela.atm 5cna.atm

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290  123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789  ----S-NDASFNVETF-N--K---TNLILQGDATVSSEGHLLLTNVKGN-----E-EDSMGRAFYSAPIQINDRTIDN--LASFSTNFTFRINAKN--IE-NSAYGLAFALVPVGSRPK--L-KGRYLGLFN--TT-N--YDRDAHTVAVVFDTV-----------S-NRIEIDVNSIRPIATESCN---FGHNNGEKAEVRITYDSPKNDLRVSLLYPSSEEKCHVSATVPLEKEVEDWVSVGFSATSGSK----KETTETHNVLSWSFSSNF----I-------------------  ------NTVNFTYPDFWSYSLKNGTEITFLGDATRI-PGALQLTKTD--ANGNPV-RSSAGQASYSEPVFLWDS-TGK--AASFYTSFTFLLKNYG--A--PTADGLAFFLAPVDSSVK--D-YGGFLGLFRHETA-A--DPSKNQVVAVEFDTWINKDWNDP--PY-PHIGIDVNSIVSVATTRWENDDAY--GSSIATAHITYDARSKILTVLLSYEH-GRDYILSHVVDLAKVLPQKVRIGFSAGVG--------YDEVTYILSWHFFSTLDGTNK-------------------  -----TETTSFSITKF-SPDQ---QNLIFQGDGYTT-KGKLTLT-K-------AV-KSTVGRALYSTPIHIWDRDTGN--VANFVTSFTFVIDAPS--SY-NVADGFTFFIAPVDTKPQ--T-GGGYLGVFN--SK-E--YDKTSQTVAVEFDTFYNAA-WDPSNKE-RHIGIDVNSIKSVNTKSWN---L--QNGERANVVIAFNAATNVLTVTLTYPN-VTSYTLNEVVPLKDVVPEWVRIGFSATTG-A------EFAAQEVHSWSFNSQL----G-------------------  -----TETTSFSITKF-GPDQ---PNLIFQGDGYTT-KERLTLT-K-------AV-RNTVGRALYSSPIHIWDSKTGN--VANFVTSFTFVIDAPN--SY-NVADGFTFFIAPVDTKPQ--T-GGGYLGVFN--SK-D--YDKTSQTVAVEFDTFYNTA-WDPSNGD-RHIGIDVNSIKSINTKSWK---L--QNGKEANVVIAFNGATNVLTVSLTYPN-ETSYTLNEVVPLKEFVPEWVRIGFSATTG-A------EFAAHEVLSWYFNSEL----SVTS----------------  -----TETTSFSITKF-GPDQ---QNLIFQGDGYTT-KERLTLT-K-------AV-RNTVGRALYSSPIHIWDSKTGN--VANFVTSFTFVIDAPN--SY-NVADGFTFFIAPVDTKPQ--T-GGGYLGVFN--SK-D--YDKTSQTVAVEFDTFYNTA-WDPSNGD-RHIGIDVNSIKSINTKSWA---L--QNGKEANVVIAFNAATNVLTVSLTYP---TSYTLNEVVPLKEFVPEWVRIGFSATTG-A------EFAAHEVLSWYFHSEL----A-------------------  -----VETISFSFSEF-EPGN---DNLTLQGASLITQSGVLQLTKIN--QNGMPA-WDSTGRTLYAKPVHIWDMTTGT--VASFETRFSFSIEQPY--TRPLPADGLVFFMGPTKSKPA--Q-GYGYLGIFN--QS-K--QDNSYQTLGVEFDTFSN-P-WDP--PQVPHIGIDVNSIRSIKTQPFQ---L--DNGQVANVVIKYDASSKLLHAVLVYPSSGAIYTIAEIVDVKQVLPEWVDVGLSGATGAQ----RDAAETHDVYSWSFQASL----PE------------------  -----ANIQSFSFKNF-N--S---PSFILQGDATVS-SGKLQLTKVK--ENGIPT-PSSLGRAFYSSPIQIYDKSTGA--VASWATSFTVKISAPSKA---SFADGIAFALVPVGSEPR--R-NGGYLGVFD--SD-V--YNNSAQTVAVEFDTLSNSG-WDP--SM-KHIGIDVNSIKSIATVSWD---L--ANGENAEILITYNAATSLLVASLVHPSRRTSYILSERVDITNELPEYVSVGFSATTGLS----EGYIETHDVLSWSFASKL----PDDSTAEPLDLASYLVRNVL  -----AETVSFSWNKF-VPKQ---PNMILQGDAIVTSSGKLQLNKVD--ENGTPK-PSSLGRALYSTPIHIWDKETGS--VASFAASFNFTFYAPD--TK-RLADGLAFFLAPIDTKPQ--T-HAGYLGLFN--EN-E---S-GDQVVAVEFDTFRN-S-WDP--PN-PHIGINVNSIRSIKTTSWD---L--ANNKVAKVLITYDASTSLLVASLVYPSQRTSNILSDVVDLKTSLPEWVRIGFSAATGLD-----IPGESHDVLSWSFASNL----PH------------------  ------KTISFNFNQF-HQNE---EQLKLQRDARISSNSVLELTKVV--N-GVPT-WNSTGRALYAKPVQVWDSTTGN--VASFETRFSFSIRQPF--PRPHPADGLVFFIAPPNTQTG--E-GGGYFGIYN-----PLS---PYPFVAVEFDTFRN-T-WDP--QI-PHIGIDVNSVISTKTVPFT---L--DNGGIANVVIKYDASTKILHVVLVFPSLGTIYTIADIVDLKQVLPESVNVGFSAATGDPSGKQRNATETHDILSWSFSASL----PG------------------  -----TETTSFLITKF-SPDQ---QNLIFQGDGYTT-KEKLTLT-K-------AV-KNTVGRALYSSPIHIWDRETGN--VANFVTSFTFVINAPN--SY-NVADGFTFFIAPVDTKPQ--T-GGGYLGVFN--SA-E--YDKTTQTVAVEFDTFYNAA-WDPSNRD-RHIGIDVNSIKSVNTKSWK---L--QNGEEANVVIAFNAATNVLTVSLTYPN-VTSYTLSDVVSLKDVVPEWVRIGFSATTG-A------EYAAHEVLSWSFHSEL----S-------------------  -----AETVSFNFNSF-SEGN---PAINFQGDVTVLSNGNIQLTN--------LNKVNSVGRVLYAMPVRIWSSATGN--VASFLTSFSFEMKDIKDY---DPADGIIFFIAPEDTQIPAGSIGGGTLGVSDT-KGA-------GHFVGVEFDTYSNSEYNDP--PT-DHVGIDVNSVDSVKTVPWN---S--VSGAVVKVTVIYDSSTKTLSVAVTND-NGDITTIAQVVDLKAKLPERVKFGFSASGS-L-----GGRQIHLIRSWSFTSTL----ITT-----------------  STHE-TNALHFMFNQF-SKDQ---KDLILQGDATTGTDGNLELTRVS--SNGSPQ-GSSVGRALFYAPVHIWES-S-AVV-ASFEATFTFLIKSPD--S--HPADGIAFFISNIDSSIPSGS-TGRLLGLFP--DA-N-A----DTIVAVELDTYPNTDIGDP--SY-PHIGIDIKSVRSKKTAKWN---M--QNGKVGTAHIIYNSVDKRLSAVVSYPN-ADSATVSYDVDLDNVLPEWVRVGLSASTG-L------YKETNTILSWSFTSKL----KSN-----------------

Download the alignment in fasta format
Columns in green are common core regions (i.e., columns with no gaps and the maximum pairwise residue distance < 4Å).

Metrics of the alignment

Visualization of the alignment

    Total 12 input structures:      1avba.atm 1lec.atm 1len.atm 1lgc.atm 1loe.atm 1lte.atm 1lu1.atm 1sbf.atm 1wbla.atm 2ltn.atm 2pela.atm 5cna.atm

    Click on the corresponding buttons to show different regions (the default show is for the common core region).

    

    






    Download the superimposed structure file

Reference

R. Dong, S. Pan, Z. Peng, Y. Zhang and J. Yang, mTM-align: a server for fast protein structure database searching and multiple protein structure alignment, submitted, 2017.

R. Dong, Z. Peng, Y. Zhang and J. Yang, mTM-align: an algorithm for fast and accurate multiple protein structure alignment, Bioinformatics, 2017 (in press).