Multiple structure alignment

1b55a.atm 1bak.atm 1btn.atm 1dbha.atm 1dro.atm 1dyna.atm 1faoa.atm 1fgya.atm 1fhoa.atm 1foea.atm 1mai.atm 1pls.atm 1qqga.atm

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410  123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789  ---------------------------------------------A---A-----------V----ILESIFLKR---S----------Q-Q-----KKKTSP----L---N----FKKRLFLL--T--V-------HKLSYY-EYD----FERGR---------------R------------G------------S-K-K---------G-SIDVEKITCVET-V----V-----P---EKNPPPERQIPRRMEQISIIERF---P--YPFQVVY------D-------E------------------GPLYVFS-P---TEELRKRWIHQLKNV---------I-------RY----N----------S-----------DLVQKYHPCFWIDGQYLCCSQTAKNAMGCQILEN-  ----GSHMGK---------------------------------------D-----------C----IMHGYMSKM---G--N----------P-F------------LT--Q----WQRRYFYL--F--P-------NRLEWR-G-E---------------------------------------------------GE------APQ--S-LLTMEEIQSVEE-T----Q-----I--K-----------------------E-RK---CLLLKIR-----G-------G------------------KQFILQC-D---SDPELVQWKKELRDA---------Y-------R-EA--QQLV-------QRVPKMKNKPRS-----------------------------------  -------------------------------------------------------------------MEGFLNRK---H--EWEAHNKKA-S----------S----R---S----WHNVYCVI--N--N-------QEMGFY-KD---------A---------------K------------S-AA-SG------I-P-YH---S----EVPVSLKEA-ICEV-A----LD----Y---K--K---K------------------K--HVFKLRLS-----D-------G------------------NEYLFQA-K---DDEEMNTWIQAISSA---------------------------------------------------------------------------------  ---------------AIKKNE-IQKNIDGWEGKDI------GQCCN---E-----------F----I-EGTLTRV--GA-----------------------------------K--HERHIFL--F--D-------GL-ICC-KSN----HG---QPR-----LPGASNAE------------Y------------R-L-K---------E-KFF-R-K-VQIN-DK---D-----D--TN--E---Y------------------K--HAFEIILK-----D-------E------------------NSVIFSA-K---SAEEKNNW-AALISL---------Q-------Y-R---STL-------------------------------------------------------  ----------GSG------------------------------------T-----------GAGEG-HEGYVTRKHE------------WDSTTKKA-----------SNRS----WDKVYMAAKA-----------GRISFY-KD-------------------------Q------------KG----YKSNPELTFRGE---------P-SYDLQNA-AIEI-A----SD----Y---T--K---K-------------------K-HVLRVKLA-----N-------G------------------ALFLLQA-H---DDTEMSQWVTSLKAQ---------SD------S-----TA--------------------------------------------------------  ---------------------------------------------I---L-----------V----IRKGWLTIN--NI-----------------------GIMKG----G----SKEYWFVL--T--A-------ENLSWY-KD---------D---------------E------------E-----K------E-K-K---------Y-MLSVDNL-KLRD-VE---K-----G---F-MS---S------------------K--HIFALFN-TEQ--R-------NVY-------------KDYRQLELAC-E---TQEEVDSWKASFLRA---------G-VYPERV----------------------------------------------------------------  ------------------------------------------------PS-L---------G----TKEGYLTKQ---G----------G-L----------V----K---T----WKTRWFTL--H--R-------NELKYF-KD---------Q---------------M------------S-----P------E-P-I---------R-ILDLTECSAVQF-D----Y-----S---Q--E---R------------------V--NCFCLVF------P-------F------------------RTFYLCA-K---TGVEADEWIKILRWK---------L-------S-Q---I---------------------------------------------------------  ----------------------------------------------TFFN-----------P----DREGWLLKL---G----------G-R----------V----K---T----WKRRWFIL--T--D-------NCLYYF-EY---------T---------------T------------D-----K------E-P-R---------G-IIPLENL-SIRE-V----L-----D---P--R---K------------------P--NCFELYN-PSHKGQ-------VI-KACKTEADGRVVEGNHVVYRISA-P---SPEEKEEW-KSIKAS---------I-------S-RDPFY----------D----------------------------------------------  MGDT---------------GKL---------------------------GR----------I----IRHDAFQVW---E----------G-D----------E--------P----PKLRYVFL--F--R-------NKIMFTEQ-DASTS----------------------------PPSY--------------T-H-Y---------S-SIRLDKYNIRQHT---------------------------------------TD--EDTIVLQPQ-----E-----PGL------------------PSFRIKPKDFETSEYVRKAWLRDIAEEQEKYAAERD------------------------------------------------------------------------  --------------------E-FGA-VFDQLIAEQTGEKKEVADLS--GD-----------L----LLHTSVIWL--NP-P---------------------A-SL-----GKWKKEPELAAFV--F--K-------TAVVLV-YKD----GS---KQKKKLVGSH------RLSIYEEW---DP------------F-R-F---------R-HIPTEAL-QVRA-LP---S-----A--D-----------------------AEAN--AVCEIVHV-----KSESEGRPE------------------RVFHLCC-S---SPESRKDFLKSVHSI---------L-------R-DK--HRR------------------------------------------------------Q  -------------G-------------------------------------LQDDPDLQAL-----LKGSQLLKV---K----------------------------SSS-W----RRERFYKL--QEDC-------KTIWQE----------------------------------------------------------SRKVMRSPESQ-LFSIEDIQEVRM-G----HRTEGLEKF-A-RD---I------------------PEDRCFSIVFK-----D-------QR-----------------NTLDLIA-P---SPADAQHWVQGLRKI---------I-------H---------------------------------------------------------------  --------------M-----EP---------------------------K-----------R----IREGYLVKK---GSV---------------------F----N---T----WKPMWVVL--L--E-------DGIEFY-KK---------K---------------S------------D-----N------S-P-K---------G-MIPLKGS-TLTSPCQDFG------K----------R------------------M--FVFKITTT-----K-------Q------------------QDHFFQA-A---FLEERDAWVRDINKA---------I-------K-CI--EGL-EHHHHHH-----------------------------------------------  -------------------------------------------------D-----------V----RKVGYLRKP--------------------------------K---S----MHKRFFVL--R--AASEAGGPARLEYY-EN---------E---------------K------------K-WRHKS------SAP-K---------R-SIPLESCFNINK-R----A-----D---S--K---N------------------K--HLVALYT------R-------D------------------EHFAIAA-D---SEAEQDSWYQALLQL---------H-----------------------------------------------------------------------

Download the alignment in fasta format
Columns in green are common core regions (i.e., columns with no gaps and the maximum pairwise residue distance < 4Å).

Metrics of the alignment

Visualization of the alignment

    Total 13 input structures:      1b55a.atm 1bak.atm 1btn.atm 1dbha.atm 1dro.atm 1dyna.atm 1faoa.atm 1fgya.atm 1fhoa.atm 1foea.atm 1mai.atm 1pls.atm 1qqga.atm

    Click on the corresponding buttons to show different regions (the default show is for the common core region).

    

    






    Download the superimposed structure file

Reference

R. Dong, S. Pan, Z. Peng, Y. Zhang and J. Yang, mTM-align: a server for fast protein structure database searching and multiple protein structure alignment, submitted, 2017.

R. Dong, Z. Peng, Y. Zhang and J. Yang, mTM-align: an algorithm for fast and accurate multiple protein structure alignment, Bioinformatics, 2017 (in press).