Multiple structure alignment

1d2ka.atm 1e15a.atm 1e9la.atm 1edqa.atm

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570  123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|  -----------------------GGFRSVVYFVNWAIY-------G----RGHNPQDL---KADQFTHILYAFANIRP--------------------------SGEVYLS--DT--WADTDKHYPGD-KWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTYS------P-NFKTPASTEEGRKKFADTSLKLMKDL-GFDGIDIDWEYPE---------DEKQANDFVLLLKACREALDAYSAKHPNGK--KFLLTIASPAGPQNYNK-L-KLAEMDKYLDFWNLMAYDFSGSWD-KVSGHMSNVFPSTTKPE------------------------STPFSSDKAVKDYIKAG-VPANKIVLGMPLYGRAFAST--D----GIGTSFNGV----------GG--G--S--W-ENGVWDYKDMP--Q----QGAQVTELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSDK----------TGNESLVGTVVNGLGGTG-----------------------KLEQRENELSYPESVYDNLKNGMPS  -----------------------TRKAVIGYYFIPTNQINNYTETDTSVV-PFPVSNITPAKAKQLTHINFSFLDINS--------------------------NLECAWDPATNDAK-AR------------------DVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDY-GFDGVDIDWEYPQ----------AAEVDGFIAALQEIRTLLNQQTITDG-RQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWE-KVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSP-FSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVS-G-GNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQ-MLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN-R-------NG---DLLAALDRYFNA-ADYDDSQLDMGTGLRYTGVGPG---------------------------  -------------------------YQLMCYYTSWAKD-------RPIEG-SFKPGNI---DPCLCTHLIYAFAGMQ---------------------------NNEITYT--HE--Q-DL------------------RDYEALNGLKDKNTELKTLLAIGGWKFG------PAPFSAMVSTPQNRQIFIQSVIRFLRQY-NFDGLNLDWQYPGSR-----GSPPKDKHLFSVLVKEMRKAFEEESVEKD-IP--RLLLTSTGAGIIDVIKSGY-KIPELSQSLDYIQVMTYDLHDPKD-GYTGENSPLYKSP-YDIGK---------------------S-ADLNVDSIISYWKDHG-AASEKLIVGFPAYGHTFILSD-P-SKTGIGAPTIST---------GPP--GKYT--D-ESGLLAYYEVCT-FLN--EGATEVWDAPQEVPYAYQ--GNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDDFSGSFCHQRHF---PLTSTLKGDLNI-H---------------------SA---S---------------------  TDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEWGVY-------G----RNFTVDKI---PAQNLTHLLYGFIPICGGNGINDSLKEIEGSFQALQRSCQGREDFKVSIH--DP--FAALQKAQKGVTAWDD---PYKGNFGQLMALKQAHPDLKILPSIGGWTLS------D-PFFF-MGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVET--GR--KYELTSAISAGKDKIDK-V-AYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPD-------------------------TAYTTVNGVNALLAQG-VKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGP----------VK--G--T--W-ENGIVDYRQIAGQFMS--GEWQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN----------G---DILNSMNASLGNSA-----------------------GV-Q---------------------

Download the alignment in fasta format
Columns in green are common core regions (i.e., columns with no gaps and the maximum pairwise residue distance < 4Å).

Metrics of the alignment

Visualization of the alignment

    Total 4 input structures:      1d2ka.atm 1e15a.atm 1e9la.atm 1edqa.atm

    Click on the corresponding buttons to show different regions (the default show is for the common core region).

    

    






    Download the superimposed structure file

Reference

R. Dong, S. Pan, Z. Peng, Y. Zhang and J. Yang, mTM-align: a server for fast protein structure database searching and multiple protein structure alignment, submitted, 2017.

R. Dong, Z. Peng, Y. Zhang and J. Yang, mTM-align: an algorithm for fast and accurate multiple protein structure alignment, Bioinformatics, 2017 (in press).