Multiple structure alignment

d1a1w__.ent d1d2za_.ent d1d2zb_.ent d1ddf__.ent d1dgna_.ent d1fada_.ent d1icha_.ent d1n3ka_.ent d1ngr__.ent d3crd__.ent d3ygsp_.ent

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270  123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|12345678  M----------------------------------DPF-L--VLLHSVS-SSLSS-SELTELKYLCL------------------------G-R-VGKR-KLERV---Q------------SGLDLFSMLL-E-Q---N---DLEPGH-TELLRELLAS--LR--R-HDLLRRVD-D-FE-------------------------------------------------------------------------------------------------  -LDN--------------T-----M-------AIRL-L-PLPV-RAQLC-AHLDALDVWQQLATAV---------------------------K-LY-PDQVEQIS-SQKQ-RG----RS-ASNEFLNIWG-GQY----N--H----T-VQTLFALFKK--LK--L-HNAMRLIK-D-Y---VS---E----------------------------------------------DLHKYI-------------------------------------  ----LSSKY-------SRN-----T-------ELRR-V-EDND-IYRLA-KILDENSCWRKLMSII-PKGMDVQACSGAGCLNFPAEIKKGF-K-YTAQ-DVFQID-EAANRLP-PD-QS-KSQMMIDEWK-TSGKLNER--P----T-VGVLLQLLVQ--AE--L-FSAADFVALD-F---LN---E------------------------------------------------STP-ARPVDGPGALISLE-----------------------  ---------METVAINL-SD----V-------DL---S-K---YITTIA-GVMTL-SQVKGFVRKN---------------------------G-VNEA-KIDEIKND--N---VQDTAEQKVQ-LLRNWH-Q-L---HGKKE----A-YDTLIKDLKKANLCTLA-EKIQTIILKD-----IT---S------------------------------------------------------------------DSENSNFRNEIQSLVLEHHHHHH  ------------------------A-------D-Q--LLR--KKRRIFI-HSVGA-GTINALLDCLL------------------------EDEVISQE-DMNKVR-DEND----T-VMD-KARVLIDLVT-G-K---GP-KS------CCKFIKHLCE---E--D-PQLASKMG-L---H------------------------------------------------------------------------------------------------  -------------------------AAPPGEAYL---Q-V---AFDIVC-DNVGR--DWKRLAREL---------------------------K-VSEA-KMDGIEEK--Y---PRSL-SERVRESLKVWK-N-A---EKKNA----S-VAGLVKALRT--CR--L-NLVADLVEEA-----QE---S-----------------------------------------------------------------------------------------  ---------------------------------------P--ATLYAVV-ENVPP-LRWKEFVKRL---------------------------G-LSDH-EIDRLE-LQNG-RC----LREAQYSMLATWR-RRT---PRRE-----ATLELLGRVLRD--MD--L-LGCLEDIE-EAL--C-----------------------------------------------------------------------------------------------  M----------------------------------AEY-G--TLLQDLT-NNITL-EDLEQLKSACK------------------------E-D-IPSE-KSEEI---T------------TGSAWFSFLE-S-H---N---KLDKDN-LSYIEHIFEI--SR--R-PDLLTMVV-D-YR--TRVLKI-SEEDELDTKLTRIPSAKKYKDIIRQPSEEEIIKLAPPPKKA-----------------------------------------------  ------------------G-----N-------LYSS-L-PLTK-REEVE-KLLNG-DTWRHLAGEL---------------------------G-YQPE-HIDSFT-HEA---------C-PVRALLASWG-AQ----DS--A----T-LDALLAALRR--IQ--R-ADIVESLC-S-E--------------------------------------------------------------------------------------------------  -------------------M--EAR-------D-KQ-VLR--SLRLELGAEVL-V-EG--LVLQYLY------------------------QEGILTEN-HIQEIN-AQ-----TT-GLR-KTMLLLDILPSR-G---P--KA------FDTFLDSL-----Q--EFPWVREKLK-K-AR--EEA---MTDL--------------------------------------PAG--------------------------------------------  --------------------SMDEA-------D-RR-LLR--RCRLRLV-EEL----QVDQLWDVLL------------------------SRELFRPH-MIEDIQ-RAGS---GS-RRD-QARQLIIDLE-T-R---GS-QA------LPLFISCLED--TG--Q-DMLASFLR-T-NRQ-A--------------------------------------------------G-------------------------------------------

Download the alignment in fasta format
Columns in green are common core regions (i.e., columns with no gaps and the maximum pairwise residue distance < 4Å).

Metrics of the alignment

Visualization of the alignment

    Total 11 input structures:      d1a1w__.ent d1d2za_.ent d1d2zb_.ent d1ddf__.ent d1dgna_.ent d1fada_.ent d1icha_.ent d1n3ka_.ent d1ngr__.ent d3crd__.ent d3ygsp_.ent

    Click on the corresponding buttons to show different regions (the default show is for the common core region).

    

    






    Download the superimposed structure file

Reference

R. Dong, S. Pan, Z. Peng, Y. Zhang and J. Yang, mTM-align: a server for fast protein structure database searching and multiple protein structure alignment, submitted, 2017.

R. Dong, Z. Peng, Y. Zhang and J. Yang, mTM-align: an algorithm for fast and accurate multiple protein structure alignment, Bioinformatics, 2017 (in press).