Multiple structure alignment

d1bhi__.ent d1fu9a_.ent d1fv5a_.ent d1ncs__.ent d1njqa_.ent d1paa__.ent d1rmd_1.ent d1tf3a1.ent d1tf3a3.ent d1yuja_.ent d2drpa1.ent d2glia1.ent d2glia2.ent d2glia4.ent d5znf__.ent

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110  123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|1234567  ---------------------MSD-----------------------------DKPFLCT--APGC--G-QRFTNEDHLAVHKHK-H---E---------M-T-L--KFG------  GSAAE-----V-------------------------------------MK------KYCS--T--C--D-ISFNYVKTYLAHKQFYCKN-KP------------------------  -----GSLLKP-------------------------------------AR------FMCL--P--C--G-IAFSSPSTLEAHQAYYCSH-R--------------------I----  -----------TLPRGSIDKY--------------------------VKEMPDK-TFECL--FPGC--T-KTFKRRYNIRSHIQT-H---L-----------E-DR----------  ------------------------------------------------WPP---RSYTCS--F--C--K-REFRSAQALGGHMNV-H---RRDR-ARLRL----------------  -------------------------------------------------K-----AYACG--L--C--N-RAFTRRDLLIRHAQKIH--SG---NL--------------------  -----------------------------------------------------L-MVKCP--AQDC--N-EEVSLE-KYNHHVSS-H---K-----------E-S-K---------  -----------------------------------------------------MKRYICS--FADC--G-AAYNKNWKLQAHLSK-H---T---------G---------E-----  ----------------------------------------------K--------NFTCD--SDGC--D-LRFTTKANMKKHFNRFH---N-----------I------------K  ------------------------PKAKRAKHPPGTEKPRSRSQSE-------Q-PATCP--I--C--Y-AVIRQSRNLRRHLELRH---F-----------A-K--P---GV---  -----------------------------------------------FTK-EGEHTYRCK--V--C--S-RVYTHISNFCRHYVTSH---K---------RNV------------K  -------------------------------------------------E------TDCR--WDGC--S-QEFDSQEQLVHHINSEH---I-----------H-G--------ER-  ------------------------------------------------------KEFVCH--WGGCSRELRPFKAQYMLVVHMR-RH---T-----------GE------------  ----------------------------------------------K--------PYMCEHEG--C--S-KAFSNASDRAKHQNRTH---------------S-N--E--------  -----------------------------------------------------K-TYQCQ--Y--C--E-YRSADSSNLKTHIKTKH---S---------K-E------------K

Download the alignment in fasta format
Columns in green are common core regions (i.e., columns with no gaps and the maximum pairwise residue distance < 4Å).

Metrics of the alignment

Visualization of the alignment

    Total 15 input structures:      d1bhi__.ent d1fu9a_.ent d1fv5a_.ent d1ncs__.ent d1njqa_.ent d1paa__.ent d1rmd_1.ent d1tf3a1.ent d1tf3a3.ent d1yuja_.ent d2drpa1.ent d2glia1.ent d2glia2.ent d2glia4.ent d5znf__.ent

    Click on the corresponding buttons to show different regions (the default show is for the common core region).

    

    






    Download the superimposed structure file

Reference

R. Dong, S. Pan, Z. Peng, Y. Zhang and J. Yang, mTM-align: a server for fast protein structure database searching and multiple protein structure alignment, submitted, 2017.

R. Dong, Z. Peng, Y. Zhang and J. Yang, mTM-align: an algorithm for fast and accurate multiple protein structure alignment, Bioinformatics, 2017 (in press).