Multiple structure alignment

d1cf2o2.ent d1dih_2.ent d1e5qa2.ent d1ebfa2.ent d1f06a2.ent d1h6da2.ent d1j5pa3.ent d1lc0a2.ent d1mb4a2.ent d1nvmb2.ent d1p1ja2.ent

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700  123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789  --SC---NTT-GLCRTLKPLHDSF--G---IKKVRAVI----V-RR-------------------------G-------A--D-------------PAQ--VS------------------------------------------KG---PINAIIPNP-----P---K-L----P--------------------------------------------SH--H-GPDV--KTVL-D-----I-----------------------------------------------------------------------------------------------------------------------------------------NIDT---------------MAVIV-----------------------------------------------------------------------------------------------------------------------------P---------TTLMHQHNVMVEVEE-TPTVDDIIDVFEDT--P-R--VILIS--AED--GLTSTAEIMEYAKELGRSRNDLFEIPV-WRESITVV----D----------------NE--IYYMQA--V-H-------QES-------------------------D-----------  ----VGV--NVM-LKLLEKAAK-V--MGDYT-DIEIIE----A-HH-------------------------R--H-------K-----V----------------------------------------------------------------------DA--------------P----------------------------------------S-GT--ALAMG-EAIAH----A-----LDK-----DLK----D--------------------------------------------------------------------------------------------C-------AVYSREGHTGERVP------G-TIGF---------------ATVRA-----------------------------------------------------------------------------------------------------------------------------G-----D---I--VGEHTAMFADIG--------------------------------------------------------------------------------------------E--RLEITH--K-A-------------------------------------SS-------R  LDPG--IDHL-YAIKTIEEVHAAG--G--KIKTFLSYC----G-GLPAPESSDN------------PL--GY--KF---S--WSSRGVL------L---------------------------------------------------------------ALRNA----------ASFYKDGKVTNVAGPELMATAKPYFIYPGFAFVAYP---------NRD--S-T-PY-KER-Y-Q-----IP-----------------------------------------------------------------------------------------------------------------E--------------------ADNIVR---------------GTLRYQGFPQF----IKVLVDIGFLSDEEQPFLKEAIPWKEATQKIVKASSASEQDIVSTI-VSNA----------------TFESTEEQKRIVAGLKWL---GIFSDKKITPRGNALDTLCATLEEK--MQFEEGE---RD-LVMLQHKFEIENKD-----------------------------------------------------------------------GS----------------RE--TRTSSL--C-E-------------------------------------YGAPIGSGG-  -----------PIISFLREIIQTG--D--EVEKIEGIFSGTLS-YI--------FNEFSTSQANDVKFSDVVKVAKKLGY--TEPD-PR----D-----------------------------------------------------------------DLN-------------G----------------------------------L-------DVA--RK-V-TIVGR----I----SG-V-----EVESPTS--FPVQSLI--PKPLE-SVKSADEFLEKL--SDY---DKDLTQLKKEAATENKVLR-------------FI-------------GKVD------V-------------------AT-----K-SVSVGIEKYDYSHPFASLK---------------------------------------------------------------------------------------------------------------------------------------------G--SDNVISIKTKR--------------------------------------------------------------------------------------------YTNPVVIQG--A-G--------A-----------------------------G--------  ------W-DPGMFSINRVYAAAV---L-AEH-QQHTFW----GPGL------------------------------------SQ----G-----------------------------------------------------------------------H--------------------------------------------------SDA----------------------------------------------------LRR----IP----------GVQK-----------------------------AV-----QYTLPSEDALEKARRGE---A--------------------------GDLTGKQ---------------------THK-----RQCFVVA--------------------------------------DAADHERIE---NDIRTMPDYFVGYEVEV----------NF-I--DEATF------------------------DSEHT-------G-M-PHGGHVITTGDT-G-----------------------------------------------------------------------GF----------------NH--TVEYIL--K-L-------------------------------------D---------  ---------DPM-NRAAVKLIRENQLG--KLGMVTTDN----S-DV-------------------------M--DQN-D-PAQ-QW-RLRRELAGG---------------------------------------------------------------GS--------------L----------------------------------MD----IGIY--GLNGT-RYLL-----G-------E-----EP-----IEVRAY----------------------------TYSD------------------PNDER-FVEVED-R------------------IIWQMRFR----S-------------G------A-LSHG---------------ASSYS-----------------------------------------------------------------------------------------------------------------------------T---------TT---TSRFSVQGDK--------------------------------------------------------------------------------------------A--VLLMDPATG-Y----------YQNLISVQTPGHANQSMMPQFIMPAN-----------  ------A--I-G---GL-DVLS-S--IKDFVKNVRIET----I-KP-------------------------P--K-------S-----L--------------------------------------------------------GL--DL-KGKTV--VF--------EGSVEEA----------------------------------S---KLFPRN---INVA-STIGL----I-----V-G------F--------------------------------------------------------------------------------------------------E-----------------------------KVKV---------------TIVAD-----------------------------------------------------------------------------------------------------------------------------P-----A---MD-HNIHIVRISSAI--------------------------------------------------------------------------------------------G--NYEFKI--E-N--------------------------------------I--------  ---------MEE-FEFLRREVL-G--K--ELLKGSLRF----T-AS-------------------------P----------L----EEE--RFGF----------------------------------------------------------------P--------------A----------------------------------FS----G-IS--RLTWL-VSLF-------------G-----EL-----SLISAT----------------------------LEER-------------------KEDQ-Y----M-K------------------MTVQLETQ----N-------------K------G-LLSW---------------IEEKG-----------------------------------------------------------------------------------------------------------------------------P-----G---LK--RNRYVNFQFTS--------------------------------------------------------------------------------------------G--SLEEV-------------------P------------SVG---V--N-----------  --NC---TVS-LMLMALGGLYERG--L---VEWMSAMT----Y-QA-------------------------A-------S--GA------------GAQNMRELISQMGVINDAVSSELANPASSILDIDKKVAETMRSGSFPTDNFGVPLAGSLIPWID---VKRDNG-Q----S----------------------------------K--------EEW-KA-GVEA--NKILGLQDSP-V-----------------------------------------------------------------------------------------------------------------------------------------PIDG---------------TCVRI-----------------------------------------------------------------------------------------------------------------------------G---------AMRCHSQALTIKLKQ-NIPLDEIEEMIATH--NDW--VKVIPNERDITARELTPAKVT-----------GTLSVPV-G--RLRKMAMG-D----------------DF--LNAFTV--G-D-------QLL-------------------------WG----------  ---C---GGQ-ATIPMVAAVSRVA--K---VHYAEIVA----S-IS-------------------------S--K----S--AG-PGTR------A---------------------------------------------------------------NI--------------D----------------------------------E--------FTE-TT-SKAI-EV--IGG-----A---------------------------------------------------------------------------------------------------------------------------------------A-KGKA---------------IIIMN-----------------------------------------------------------------------------------------------------------------------------P-----AEPPL--IMRDTVYVLSAA-ADQ-AAVAASVAEMVQAVQAY---------------------------------VPGYRLKQQ--VQFD--V-IPESAPLNIPGLGRFSGLK--TSVFLE--VEGAAHYLPA----------------------------------------  ---S--GQTK-LKSVLAQFLVDAG--I--KPVSIASYN----H-LG---------------------------------N--ND--GYN------L---------------------------------------------------------------SAPKQ----------FR----------------------------------S--------KEI-SK-S-SV-IDD---I-----IASNDILY------------------------------------------------------------------------------------------------------NDKLGK--------------------KVDHCI---------------VIKYM-----------------------------------------------------------------------------------------------------------------------------K-----P---VGDSKVAMDEYYSELML-----------------------------------------------------------------------GG----------------HN--RISIHN--V-C--------------------------------------E--------

Download the alignment in fasta format
Columns in green are common core regions (i.e., columns with no gaps and the maximum pairwise residue distance < 4Å).

Metrics of the alignment

Visualization of the alignment

    Total 11 input structures:      d1cf2o2.ent d1dih_2.ent d1e5qa2.ent d1ebfa2.ent d1f06a2.ent d1h6da2.ent d1j5pa3.ent d1lc0a2.ent d1mb4a2.ent d1nvmb2.ent d1p1ja2.ent

    Click on the corresponding buttons to show different regions (the default show is for the common core region).

    

    






    Download the superimposed structure file

Reference

R. Dong, S. Pan, Z. Peng, Y. Zhang and J. Yang, mTM-align: a server for fast protein structure database searching and multiple protein structure alignment, submitted, 2017.

R. Dong, Z. Peng, Y. Zhang and J. Yang, mTM-align: an algorithm for fast and accurate multiple protein structure alignment, Bioinformatics, 2017 (in press).