Multiple structure alignment

d1cb8a3.ent d1hn0a4.ent d1j0ma3.ent d1jova_.ent d1jz8a4.ent d1lf6a2.ent d1n7oa3.ent d1nsza_.ent

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650 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 -------------------------IEP--------Y----------HHQFWNGD--------YVQHLR-----P--AYSFNVRMVSKRTRRSESGNKENLLGRYLSDGAT-NIQ--L---R-G---P-E--YY-NI--MPVWE------WD-KIPGITSR--D-----------------------------------------------YLTD-----RPL--TK--LWGEQ------GSNDFA-GGV---SD-GV-YGASAYALDY------D----------SL----QAKKAWFFFD--KEIVCLGAGIN-S-N-----A--P-EN---ITTTLNQSW--------LN----GPVIS-T------------------------------------------AGKT-G--R---G-----------------K-ITTFKAQ-G--QFWLLHD-------AIGYYFPEG-A-NLSLSTQ--------------------------------SQ-KG-NWFHINN---S--HSKDE------V-SGD-VFKLWIN-H---------------------G-----ARPE----NAQYAYIVLPGINKPEEIKKY-NGT------A--------------------------  --------------------------PQ--------G----------FYAFNGGA--------FGIHRW-----Q--DKMVTLKAYNTNVWSSEIYNKDNRYGRYQSHGVA-QIV--S--N--GSQLS-QG-Y---Q--QEGWD------WN-RMEGATTI--H-----------------------------------------------L-PLK---DLDS--PKPHTLMQR------GERGFS-GTS---SLEGQ-YGMMAFNLIYPANLERFD------P--NF----TAKKSVLAAD--NHLIFIGSNIN-S-S-----DKN--KN---VETTLFQHA--------ITPTLNTLWIN-G-------------------------------------------QKI-E--N---M----------------PY-QTTL-Q--Q--GDWLIDS------NGNGYLITQ--AEKVNVSRQ--------------------------------HQ-VSA---ENKNRQP-------T--------EGN-FSSAWID-H---------------------STR-----PK----DASYEYMVFLDA-TPEKMGEM-AQKFRENNGL--------------------------  --------------------------PN--------L----------YKQYAAMD--------RAVLQR-----P--GFALGLALYSTRISSYESINSENGRGWYTGAGAT-YLY--N---QDL---A-Q--YSEDY--WPTVD------AY-RIPGTTVA--S-----------------------------------------------G-------TP----IA----SGT------GTSSWT-GGV---SLAGQ-YGASGMDLSYG-----A-------Y--NL----SARKSWFMFD--DEIVALGSGIS-S-T-----A--G-IP---IETVVDNRK--------LNGAGDNAWTANG------------------------------------------AALS-T--G---L----------------GV-AQTLTGV----NWVHLAGNT-ADGSDIGYYFPGG-A-TLQTKRE--------------------------------AR-TG-TWKQINN---RPATPSTA------V-TRN-YETMWID-H---------------------G-----TNPS----GASYGYVLLPNK-TSAQVGAY-AAD---------------------------------  -------------------------------------MKTTLLKTLTPELH--L-VQHNDIPVLHLKHA--V------GTAKIS-L--------------------QGAQLISWKPQNA-KQ-D----VL-WL---SEVE----PFKNGNA-IRGGVPICYPWF-GG------------------V--K------------Q---P-----A----HG----------------TARI-RL-W-QLSHYY---ISV--HKVRLEFELF-----------SDL-------NIIEAKVSMVFT---DKCHLTFTHYG---E-E----------SAQAALH-TYFNIG-----DI--N-QVEVQG---LPE-TC----FNSLN-----Q-QQ-------E-N----VPS--PR-H--I---S---------------ENVDCIYSAEN-M---QNQILD-KSFN-RTIALHH-H-NASQFVLWNP--------------------------------WHKKTS------------------GMS---ETGYQKMLCLETA-RI--H---------------H-L-------LE---FGESLSVEISL-K----------------------------------------------  ----------------------------PAASHAIPH----------LTTS--E-M-------DFCIEL-----G--NKRWQFNRQ--------------------S-GFLSQMW--IG-DK-K-----Q-LL---------------------TPLRDQF--T-RAPLDNDIGVSEATRIDPNA-WVER---------W-KAAG------------H-YQ----A--------EA---AL-L-QC-TAD---TLA--DAVLITTAHAW------QHQG---KT--LF----ISRKTYRIDG-SGQMAITVDVEV---A-S--DT--PHPA--RIGLN-CQLAQ-------V----AERVNWL--GLGPQENYPD-------------RLTAACFD----------RWDLPL--SDMY-------TPYVFPSE----NGLRCG---T---RELNYG-------PHQWRG-D--F-QFNISRY----SQQQL--M------------ETSHRHLL-HA------------------------------E-EGTWLNIDGFHM-GIGGDDSWSP-SVSAEFQL-------SA---GRYHYQLVWCQ-K----------------------------------------------  SIKIDRFNNISAVNGPGEEDTWASA-------------------------------Q-----KQGVGTANNYVSK---VWFTLA----------------------N-GAISEVYY-PTIDT-A----DV-K-----------------------EIKFIV--TD--------------------G-KS------------F---------V-----PD----------------ETKDAI-S-KV-EKFTDKS------LGYKLVNTDK-----K-------G--RY----RITKDIFTDVKRNSLIMKAKFEAL--EGSIH--------DYKLYLA-YDPHIKNQG-SYN-----EGYVIKAN-------------------------------------------------------------------------------N----NEMLMAK-R-DN-VYTALSSNI--GWKGYSIGYYKVNDIMTDLDENKQMTKHYDSAR------------------------------------------G-NIIEGAE-I----------------------DLTKN---------SEFEIVLSF-GQSDSEAAKTAL-E------TLGEDYNNLKNNYIDEWTKYCNTL---  --------------------------TS--------Y----------LSAFNKMD--------KTAMYN-----AEKGFGFGLSLFSSRTLNYEHMNKENKRGWYTSDGMF-YLY--N---GDL---S-H--YSDGY--WPTVN------PY-KMPGTTET--D-----------------------------------------------A-------KRA-DSDT----GKV------LPSAFV-GTS---KLDDA-NATATMDFTNW-----N-------Q--TL----TAHKSWFMLK--DKIAFLGSNIQ-N-T-----S--T-DT---AATTIDQRK--------LESSNPYKVYVND------------------------------------------KEAS-L--T--------------------EQ-EKDYPET----QSVFLES-S-DSKKNIGYFFFKK-S-SISMSKA--------------------------------LQ-KG-AWKDINE---G--QSDKE------V-ENE-FLTISQA-H---------------------K-------QN----GDSYGYMLIPNV-DRATFNQM-IKE------L-E------------------------  -----------------------------------------------SIKI--R-DFG-LGSDLISLTN--K--A--GVTISFT-N--------------------LGARIVDWQ--KD-GK-H----LI-LG---FDSA----KEYLEKD-AYPG-ATVGPTA-GR------------------IKDGLVKISGKDYILNQ---NEGPQTL----HG-GE----E--------SIHT-KL-W-TY-EVT---DLG--AEVQVKFSLV-----------SNDGTNGY-PGKIEMSVTHSFDD-DNKWKIHYEAIS--DKDT----------VFNPTGN-VYFNLNGDASESV--E-NHGLRL---AAS-RF----VPLKDQTEIVRGDI-------VDIKNTDLDFRQEKQLSNA---FNSNMEQVQL-----VKGIDHPFLLDQLGLDKEQARLT-L-DD-TSISVFT-D--QPSIVIFTA--------------------------------NFGDLG------------------TLYHEKKQVHHGGITFECQ-VSPGS---------EQIPELGDI-------SLKAGEKYQATTIYSL-HT------------------------------------------KLE

Download the alignment in fasta format
Columns in green are common core regions (i.e., columns with no gaps and the maximum pairwise residue distance < 4Å).

Metrics of the alignment

Visualization of the alignment

    Total 8 input structures:      d1cb8a3.ent d1hn0a4.ent d1j0ma3.ent d1jova_.ent d1jz8a4.ent d1lf6a2.ent d1n7oa3.ent d1nsza_.ent

    Click on the corresponding buttons to show different regions (the default show is for the common core region).

    

    






    Download the superimposed structure file

Reference

R. Dong, S. Pan, Z. Peng, Y. Zhang and J. Yang, mTM-align: a server for fast protein structure database searching and multiple protein structure alignment, submitted, 2017.

R. Dong, Z. Peng, Y. Zhang and J. Yang, mTM-align: an algorithm for fast and accurate multiple protein structure alignment, Bioinformatics, 2017 (in press).