Family name: group402

Multiple structure alignment




d1gw5m2.ent
d1gw5s_.ent
d1h3qa_.ent
d1h8ma_.ent

 		 --------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
 123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456
 --MIGGLFIYNHK---GEVLISRVYR---------DD---IGRNAVDAF-R-VNVIHARQQ-VRS---------P-V-TNIARTSFFHVKR-SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYF-GKI--S-EENI--KNN--FV-LIYELLDEILDFGY-PQNSETGAL-KTF-ITQQGIKSQ----------
 --MIRFILIQNRA---GKTRLAKWYM---------QFDDDEKQKLIEEV-H-AVVT-VRD-AKHT---------N-F-VEFRNFKIIYRRY-AGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYF-HNV--C-ELDL--VFN--FY-KVYTVVDEMFLAGE-IRETSQTKVLKQLLMLQS-----LE--------
 MSGSFYFVIVGHH---DNPVFEMEFLPPGKAESKD-D---HRHLNQFIAHAALDLV-DE------NMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDV-RQEDGIKNFFTDVYDLYI-KFAMN-PFYE-P--NSP--I-RSSAFDRKVQFLGK--KHL------------------------LS------
 M-RIYYIGVFRSGGEKALELSEVKDLS--QFGFFERSS--VGQFMTFFAETVASRT-G--------A-G---E-RQS-IEEGNYIGHVYARSEGICGVLITDKQYPVRPAYTLLNKILDEYL-VAHPK-EEWADV--TET--NDAL--KMKQLDTYIS--K-Y------------------------QDPSQADA
Download the alignment in fasta format
Columns in green are common core regions (i.e., columns with no gaps and the maximum pairwise residue distance < 4Å).

Metrics of the alignment

Lcore ccRMSD ccTM-score Lali RMSD TM-score
75 1.90 0.459 102 2.15 0.602

Visualization of the alignment




    Total 4 input structures:      d1gw5m2.ent d1gw5s_.ent d1h3qa_.ent d1h8ma_.ent

    Click on the corresponding buttons to show different regions (the default show is for the common core region).

    

    






    Download the superimposed structure file


Reference

  • R. Dong, S. Pan, Z. Peng, Y. Zhang and J. Yang, mTM-align: a server for fast protein structure database searching and multiple protein structure alignment, submitted, 2017.
  • R. Dong, Z. Peng, Y. Zhang and J. Yang, mTM-align: an algorithm for fast and accurate multiple protein structure alignment, Bioinformatics, 2017 (in press).