Multiple structure alignment

d1bor__.ent d1chc__.ent d1e4ua_.ent d1fbva4.ent d1g25a_.ent d1iyma_.ent d1jm7a_.ent d1jm7b_.ent d1ldjb_.ent d1n87a_.ent d1rmd_2.ent

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240  123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|1234  EEE-------------------------------------------------------------------------------FQF--L-RCQQCQAEA-K----------------------C--PKLLP----C--LHTLC-SGCL---E--------ASGMQCP-I-C-QAP-----------------WPL-GAD-TPAL----------------------------------------  --------------------MAT---------------------------------------------------------------VAERCPICLEDP-S---------------------NY--SM----ALPC-LH-AFCYV-CITRWIRQ-N--PTC-PLCKV-P-VE--S-----------------V-VHT--I--E-SDSEFGDQLI------------------------------  ----------------------------------------------MSRSP---DAK--E----DP---------------------V-ECPLCMEPL-EID--------------------DINFF---PCT-C-GY-QIC-RFCWHRIRTD-E-NGLC-PACRK-P-YP--EDPAVYKPLSQEELQRI-----------------------------------------------------  ---TPQDHIKVTQEQYELYC------------EMGST----------------------------F---------------------Q-LCKICAEND-----------------------KD--VK----IEPC-GH-LMC-TSCLTSWQES-E-GQGC-PFCRC-E-IK--G-----------------T-EPI--V--V-----------DPF---------------------------  -----------------------------------MD----------------------------D---------------------Q-GCPRCKTTKY---RNP--------------S-LK--LM----VNVC-GH-TLC-ESCVDLLFVR-G-AGNC-PECGTPLRKS--N-----------------F-RVQ--L--F-----------ED----------------------------  ------------------------------------------------------------AM---D-------------------DGV-ECAVCLAEL-ED------------------GEEA--RF----LPRC-GH-GFH-AECVDMWLGS-H--STC-PLCRL-T--V--V----------------V----------------------------------------------------  -----------------------------------------MDLSAL----RVEEVQNVINA--MQ-------------------KIL-ECPICLELI-K---------------------EP--VS----TK-CD-H-IFC-KFCMLKLLNQKKGPSQC-PLCKN-D-ITKRS-----------------L-QES--TRFS--------------QLVEELLKIICAFQLDTGLEYAN----  ---------------------------------------MEPDGRGA-----WAHSRAALDR--LE-------------------KLL-RCSRCTNIL-R---------------------EP--VC----LG-GCEH-IFC-SNCVSDCI-----GTGC-PVCYT-P-AWIQD-----------------L-KIN--RQLD--------------SMIQLCSKLRNLLHDN-------ELSD  ------------------------------------------------------------------KKRFEVKKWNAVALWAWDIVVD-NCAICRNHI-MD-L--CIECQANQASATSEECTV--AW----GV-C-NH-AFH-FHCISRWLKT-R--QVC-PLDNR-E-WE--F-----------------Q-KY------------------------------------------------  ---------------------------------------------------------------------------------------M-LCAISGKVP-R---------------------RP--VL----SP-KSRT-IFE-KSLLEQYVKD-T--GND-PITNE-P-LSIEE-----------------I-VEI--V--P-----------S-----------------------------  -----------------------NCSKIHLSTKLL--AV-----------------D---FPAHFV-------------------KSI-SCQICEHIL-A---------------------DP--VE----TS-C-KH-LFC-RICILRCLKVMG--SYC-PSCRY-P-CFPTD-----------------L-ESP-VKSFL--------------NILNS----------------------

Download the alignment in fasta format
Columns in green are common core regions (i.e., columns with no gaps and the maximum pairwise residue distance < 4Å).

Metrics of the alignment

Visualization of the alignment

    Total 11 input structures:      d1bor__.ent d1chc__.ent d1e4ua_.ent d1fbva4.ent d1g25a_.ent d1iyma_.ent d1jm7a_.ent d1jm7b_.ent d1ldjb_.ent d1n87a_.ent d1rmd_2.ent

    Click on the corresponding buttons to show different regions (the default show is for the common core region).

    

    






    Download the superimposed structure file

Reference

R. Dong, S. Pan, Z. Peng, Y. Zhang and J. Yang, mTM-align: a server for fast protein structure database searching and multiple protein structure alignment, submitted, 2017.

R. Dong, Z. Peng, Y. Zhang and J. Yang, mTM-align: an algorithm for fast and accurate multiple protein structure alignment, Bioinformatics, 2017 (in press).