Multiple structure alignment

d1a26_2.ent d1f0la2.ent d1giqa1.ent d1giqa2.ent d1gxya_.ent d1ikpa2.ent d1qs1a1.ent d1qs1a2.ent

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570 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 ---------------------------------------------------------------------------------LR----------------TDIK---------------------------------V----VDKDSE-EAK--IIK-QYV--KNTH-AATH--N-A--------------------YDLKVVEI--------FRIEREGESQRYKPFKQL---------HNRQLLWHGS-RT--TN-----FAG------ILSQ------------------GLRIAPPEAPVT------GYMF---GKGIYFADMVSKSA-----N-YCHT---------SQA-DPI-GLILLGEVA----LG-NMYEL-KNA----SH-------------IT-KL----P--KGK-------HSVKGLGKTAPDPTATTTLDGVEVPLGNGISTGINDTC-L-------L-YNEYIVY--D-VAQV-NLKYLLKL---------KFNYKTS--------------------------------------------------------  -----------------------------------------------------------------------------------GADDVVDSSKSFV-----------------------------------------------------------------------------------------------------------------------------------------------MENFSSYHGT-KP--GY-----VDS------IQK-------------------GIQKP-------KSGTQGNY--DDDWKGFYSTDNKYDAA-----G-YSV-DNENPL---S--GK--AGGVVKVTY-PGL-TK--VLALKV-D---NAETIKKELGLSLTEPLMEQVGTEEFIKRFGDG--ASRVVLSL-P-------------------------------FA-----EGSSSVEYINNWEQAKA-L-SVELEINFETRGKRGQDAMY----EYMAQACA------------------------------------------------  ------------------------------------------------------------IERP-EDFLKDK-ENAIQWEK----------KE-----AE---R-VEK----N---LD-TLEKEALELYK----------------K---D---SEQI-S-NYS-Q----TRQY-FYDY-Q----IES-NPREKEY------KNLRNAISKN-------------------KID-----K-PINVYYFE-SPEK-FAF-N-----KEIR-TENQNEISLEKFNELKETIQDKLFKQ------------DG---------FKDVSLYEP--GNGD--EK--P-----------------TPLLIHLKL-P---K-------------------------------------------------N-TGMLPY-I-------------------------------------NSN--DVKTLIEQD-YS--IK-I-----------------------------------------DK--IVR-IVIEG-KQYIKAEAS-IVN----------  ----------------------------------------------------------------SLDFKDDV-SKGDLWGK----------EN-----YS---D-WSN----K---LT-PNELADVNDYM----------------R---GG--YTAI-N-NYL-IS---NGPL-N---NP-------NPELDSKV------NNIENALKLT-------------------PIP-----S-NLIVYRRS-GPQE-FG--LTLTSPEYDF-------NKIENIDAFKEKWEGKVITY------------PN---------FISTSIGSV--N--MSAFA--K-----------------RKIILRINI-P---K-------------------------------------------------D-SPGAYL-S---------------------------------AIPGY-AG-EYEVLLNHG-SK--FK-I-----------------------------------------NK--VDS-YKD-GTVTKLILDAT-LIN----------  PLMLDTAPNAFDDQYEGCVNKMEEKAPLLLQEDFNMNAKLKVAWEEAKKRWNNIKPS----------------------------------------------R---S----YPKGFN-DFHGTALVAYT----------------G---SI--AVDF-N-RAV-RE----F-KEN---P--GQF---H--YKAFH------YYLTRALQLL-------------------SNG-----D-CHSVYRGTKTR---F-HY-----------------------------TGAGSVRF------------GQ---------FTSSSLSKKVAQ--SQEFF--SD-------------H--G-TLFIIKT-C-------------------------------------------------------L-GVYI-K---------------------------------EFS-FRPD-QEEVLIPGY-EV--YQ-K-----------------------------------------VR--TQGY---------NEIFLDSPKRKKSNYNCLYS  ------------------------------------------------------------------------------------------------PTGA---EFL--GDGGD---VS---F--------STRGTQNWTVER-----LL---------------------------------------------------------------------------------QAHRQLEERGYVFVGYHGT-FL--EA-----AQS------IVFG------------------GVRAR---------SQ--DL--DAIWRGFYIAGDPALAY-----G-YAQ-DQEPD-ARGR--IR--NGALLRVYV-PRSSLP-GFYRTSLTLAAPEAAGEVERLIGH--P-LP--LR---------------LDAITG-P-------------------------------EE-----EGG-RLETILGWPLAER-T-VVIPSAIPT-D-PRNV--GG-----DLDPSSIPDKEQAISALPD-YASQP-GK---------------------------  ---------------------------------------------------------TDK----VEDFKEDK-EKAKEWGK----------EK-----E----KEW------K---LTAT-EKGKMNNFL----------------D---NKN---DI-KTNY--KE----ITF-S---MAGS-----FEDEIKDL------KEIDKMFDKT-------------------NLS-----N-SIITYKNV-EPTT-IGF-N-----KSLTE---GNTINSDAMAQFKEQFLDRDIKF------------DS---------YLDTHLTAQ-----Q---V--SS-------------K--ERVILKVTV-P---SGK-------------------------------------------GSTTP-TKAGVI-L--------------------------------N----N-S--EYKMLIDNG-YM--VH-V-----------------------------------------DK--VSK-VVKKG-VECLQIEGT-LKK----------  ----------------------------------------------------------------SLDFKNDINAEAHSWGM----------KN-----YE---E-WAK----D---LT-DSQREALDGYA----------------R---QD--YKEI-N-NYL-RN---QGG------SG-------NEKLDAQI------KNISDALGKK-------------------PIP-----E-NITVYRWC-GMPE-FG--YQIS-D--PL----------PSLKDFEEQFLNTIKED------------KG---------YMSTSLSSE--R--LAAFG--S-----------------RKIILRLQV-P---K-------------------------------------------------G-STGAYL-S---------------------------------AIGGF-AS-EKEILLDKD-SK--YH-I-----------------------------------------DK--VTE-VII-KGVKRYVVDAT-LLT----------

Download the alignment in fasta format
Columns in green are common core regions (i.e., columns with no gaps and the maximum pairwise residue distance < 4Å).

Metrics of the alignment

Visualization of the alignment

    Total 8 input structures:      d1a26_2.ent d1f0la2.ent d1giqa1.ent d1giqa2.ent d1gxya_.ent d1ikpa2.ent d1qs1a1.ent d1qs1a2.ent

    Click on the corresponding buttons to show different regions (the default show is for the common core region).

    

    






    Download the superimposed structure file

Reference

R. Dong, S. Pan, Z. Peng, Y. Zhang and J. Yang, mTM-align: a server for fast protein structure database searching and multiple protein structure alignment, submitted, 2017.

R. Dong, Z. Peng, Y. Zhang and J. Yang, mTM-align: an algorithm for fast and accurate multiple protein structure alignment, Bioinformatics, 2017 (in press).