Multiple structure alignment

d1a7ta_.ent d1e5da2.ent d1jjea_.ent d1k07a_.ent d1m2xa_.ent d1qh5a_.ent d1smla_.ent

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430  123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|12345678  --------------------SVKISDDIS-ITQLSDKVYTYVSLA--EIEGW------G-MVPSNGMIVIN--NHQAALLDTPIN--DAQTEMLVNWVTDSLHA---KVTTFIPNHWHGDCIGGLGYLQRK-G-V-QSYANQMTIDLAKE--K--------------GLP-----VPEHGFTD-SLTVS--LDGMPLQCYYLGG-GHATDNIVVWLPT---E-------NILFGGCMLK-----------------DNQ--T-TS-I--GN-----I----------SDADVT-AWPKTLDK-VKAK-FPSARYVVPGHG-----------------------------------N-Y-G--------------------GT-ELIE--H-TKQ------------------IVN--Q-YI----------ESTS--  -----------------------Q------ATKIIDGFHLVGAIDWNSR-DFHGYTLSPMGTTYNAYLVED--E-KTTLFDTVKAEYKGELLCGIASVI----D-PKKIDYLVIQHLELDHAGALPALIEACQ-PEKIFTSSLGQKAMES------------------HFHYKDW--PVQVVKHGETLS--LGKRTVTFYE-TRMLHWPDSMVSWFAD---E-------KVLISNDIFGQNIAASERFSDQIPVHT-LERAM-REYY-ANI--VNP--------------YAP-QTLKAIET-LVGAGVA-PEFICPDHG-----------------------------------V-I-F---------------R-GADQCTFAVQ--K-YVE------------------YAE--QK------------------  -----------------SLP------DLK-IEKLDEGVYVHTSFE--EVNGW------G-VVPKHGLVVLV--NAEAYLIDTPFT--AKDTEKLVTWFVE-RGY---KIKGSISSHFHSDSTGGIEWLNSR-S-I-PTYASELTNELLKK--D--------------GKV-----QATNSFSGVNYWLVKN----KIEVFYPGP-GHTPDNVVVWLPE---R-------KILFGGCFIK------------------P---Y--G-L--GN-----L----------GDANIE-AWPKSAKL-LKSK-YGKAKLVVPSHS-----------------------------------E-V-G--------------------DA-SLLK--L-TLE------------------QAV--K-GL----------NESKK-  ----------YP-M--P---------NPFPPFRIAGNLYYVGTD------------------DLASYLIVT--PRGNILINSDLE---ANVPMIKASIK-KLGFKFSDTKILLISHAHFDHAAGSELIKQQTK-A-KYMVMDEDVSVILSGGKSDFHYANDSSTYFT-QS-----TVDKVL-HDGERVE--LGGTVLTAHLT-P-GHTRGCTTWTM-K---LKDHGKQYQAVIIGSI-----------------------------GV--NPG---YKLVDNITYPK---I-AEDYKHSIKV-LES--MR-CDIFLGSHA-----------------------------------GMF-DLKNKYVLLSKGQNNPFVDPTGCKNYIE--Q-KAN------------------DFY--T-EL----------KKQETG  --------------------------DVK-IEKLKDNLYVYTTYN--TF-NG------T-KYAANAVYLVT--DKGVVVIDCPWG--EDKFKSFTDEIYKKHGK---KVIMNIATHSHDDRAGGLEYFGKI-G-A-KTYSTKMTDSILAK--E--------------NKP-----RAQYTFDN-NKSFK--VGKSEFQVYYPGK-GHTADNVVVWFPK---E-------KVLVGGCIIK-----------------SAD--S-KD-L--GY-----I----------GEAYVN-DWTQSVHN-IQQK-FSGAQYVVAGHD-----------------------------------D-W-K--------------------DQ-RSIQ--H-TLD------------------LIN--E-YQ----------QKQ---  -----------------------------------MKVEVLPALT-----------------DNYMYLVIDDETKEAAIVDPV------QPQKVVDAAR-KHGV---KLTTVLTTHHHWDHAGGNEKLVKLESGL-KVYGG--DD-RI---------------------G-----ALTHKI-THLSTLQ--VGSLNVKCLAT-P-CHTSGHICYFVSKPGG-----SEPPAVFTGDTLF-----------------VA---GC---G---K-----F-----------YEGTADEMCKALLEVLGR--LPPDTRVYCGHEYTINNLKFARHVEPGNAAIREKLAWAKEKYSIGEPT-VPS--------------------TLAEE-FTYNPFMRVREKTVQQHAGETDPVTT--MRAV-RREKDQFKMPRD------  EVPLPQLRAYTVDASWL---------QPMAPLQIADHTWQIGTE------------------DLTALLVQT--PDGAVLLDGGMP---QMASHLLDNMK-ARGVTPRDLRLILLSHAHADHAGPVAELKRRTG-A-KVAANAESAVLLARGGSDDLHFGDG--ITYP-PA-----NADRIV-MDGEVIT--VGGIVFTAHFM-A-GHTPGSTAWTW-T---DTRNGKPVRIAYADSL-----------------------------SA--PG----YQLQGNPRYPH---L-IEDYRRSFAT-VRA--LP-CDVLLTPHP-----------------------------------GAS-NWDYAAGAR------AGAKALTCKAYAD--A-AEQ------------------KFD--G-QL----------AKETAG

Download the alignment in fasta format
Columns in green are common core regions (i.e., columns with no gaps and the maximum pairwise residue distance < 4Å).

Metrics of the alignment

Visualization of the alignment

    Total 7 input structures:      d1a7ta_.ent d1e5da2.ent d1jjea_.ent d1k07a_.ent d1m2xa_.ent d1qh5a_.ent d1smla_.ent

    Click on the corresponding buttons to show different regions (the default show is for the common core region).

    

    






    Download the superimposed structure file

Reference

R. Dong, S. Pan, Z. Peng, Y. Zhang and J. Yang, mTM-align: a server for fast protein structure database searching and multiple protein structure alignment, submitted, 2017.

R. Dong, Z. Peng, Y. Zhang and J. Yang, mTM-align: an algorithm for fast and accurate multiple protein structure alignment, Bioinformatics, 2017 (in press).