Multiple structure alignment

d1dt9a1.ent d1fjgk_.ent d1ilya_.ent d1jj2m_.ent

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270  123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|1234  DSK-----------------------------------FGFIVI-DG--SGALF-GTLQGNT---REVLHKFTVD---------LPKKHGRGGQSALRFARLRME-KRHNYVRKVAETAVQLFISGDKV--NVAGLVLAG--SA-------DFKTELSQSDMF-DQR--LQSKV-LKLVDISYGGENGFNQAIELSTEVLS------------------------------------------------------------------------  ---KRQVA------------------------------SGRAYIHASYNNTIVTITDP---D---GNPITWSSGGVIG---YKGSR----------------K--GTPYAAQL-AALDAAKKAMA----YGMQS-VDVIVR-GTGA------GREQAI-R--ALQA-SGL--QVKSIVDDTP-------------------VPHNGCRPKKKFRKAS--------------------------------------------------------  --------------------------------------RLRLSVFRSLKHIYAQIIDDE--K---GVTLVSASSLALK---L-K-G----------------N---KTEVARQ-VGRALAEKALA----LGIKQ-VAFDRGPY---KYH--GRVKALA-E--GARE-GGL--EF---------------------------------------------------------------------------------------------------  --------ATGPRYKVPMRRRREARTDYHQRLRLLKSGKPRLVARKSNKHVRAQLVTL---GPNGDDTLASAHSSDLAEYGWEA-P----------------T--GNMPSAYL-TGLLAGLRAQE----AGVEE-AVLDIGLN---SPTPGSKVFAIQ-E--GAID-AGL--DIP------------------------------------------HNDDVLADWQRTRGAHIAEYDEQLEEPLYSGDFDAADLPEHFDELRETLLDGDIEL

Download the alignment in fasta format
Columns in green are common core regions (i.e., columns with no gaps and the maximum pairwise residue distance < 4Å).

Metrics of the alignment

Visualization of the alignment

    Total 4 input structures:      d1dt9a1.ent d1fjgk_.ent d1ilya_.ent d1jj2m_.ent

    Click on the corresponding buttons to show different regions (the default show is for the common core region).

    

    






    Download the superimposed structure file

Reference

R. Dong, S. Pan, Z. Peng, Y. Zhang and J. Yang, mTM-align: a server for fast protein structure database searching and multiple protein structure alignment, submitted, 2017.

R. Dong, Z. Peng, Y. Zhang and J. Yang, mTM-align: an algorithm for fast and accurate multiple protein structure alignment, Bioinformatics, 2017 (in press).