mTM-align

Introduction

mTM-align is a server for efficient protein structure comparisons, which includes two related modules. The first is for fast database search with one input structure. The second is for multiple structure alignment with two or more input structures. For the first module, it takes about 2-5 seconds to search for similar structure proteins. After the search is done, the users are able to select other structures from the returned list to perform multiple structure alignment. For the second module, it takes a few seconds for input of ~10 structures of medium size.




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    • Please put all of your structures (2-20 monomeric structures in PDB format) in a folder and compress it.
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    Reference

  • R Dong, S Pan, Z Peng, Y Zhang, J Yang, mTM-align: a server for fast protein structure database search and multiple protein structure alignment, Nucleic Acids Research, 46: W380–W386 (2018).
  • R Dong, Z Peng, Y Zhang, J Yang, mTM-align: an algorithm for fast and accurate multiple protein structure alignment, Bioinformatics, 34: 1719-1725 (2018).