Multiple structure alignment

1bh6a.atm 1csee.atm 1dbia.atm 1ea7a.atm 1ga6a.atm 1gci.atm 1gt91.atm 1ic6a.atm 1lw6e.atm 1scja.atm 1thm.atm

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490  123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|12345  ----------A-------QTV---P--YGIPLIK-----------ADKVQAQGYKGA-NVKVGIID-T-GIA-SS-HT--D------L--KVVGGASF----VS----GE----SYNTDG-----NG-HGTHVAGTVAALD---NTTGVLGVA--PNVSLYAIKV-LNSSGSG---SYSAIVSGIEWATQN---G--------LDVINMSLGGPS--G-----STALKQAVDKAYASGIVVVAAAGNSGN-----------SG-SQNTI--GYPAKYDSVIAVGAVDSN-------------KNRAS----------FSSVG----------------------------S------------ELEVMAPGV---SVYSTYPSNTYTSLNGTSMASPHVAGAAALILSKY-PTLSASQVR--NRLS--S------TA--TNL----------------G-D---SFYYG-KGLINVE---AAAQ----------  ----------A-------QTV---P--YGIPLIK-----------ADKVQAQGFKGA-NVKVAVLD-T-GIQ-AS-HP--D------L--NVVGGASF----VA----GE----AYNTDG-----NG-HGTHVAGTVAALD---NTTGVLGVA--PSVSLYAVKV-LNSSGSG---SYSGIVSGIEWATTN---G--------MDVINMSLGGAS--G-----STAMKQAVDNAYARGVVVVAAAGNSGN-----------SG-STNTI--GYPAKYDSVIAVGAVDSN-------------SNRAS----------FSSVG----------------------------A------------ELEVMAPGA---GVYSTYPTNTYATLNGTSMASPHVAGAAALILSKH-PNLSASQVR--NRLS--S------TA--TYL----------------G-S---SFYYG-KGLINVE---AAAQ----------  -----------WTP--NDTYYQGYQ--YGPQNTY-----------TDYAWDV-TKGSSGQEIAVID-T-GVD-YT-HP--D------LDGKVIKGYDF----VD------NDY-DP-MDL-----NN-HGTHVAGIAAAET--NNATGIAGMA--PNTRILAVRA-LDRNGSG---TLSDIADAIIYAADS---G--------AEVINLSLGCDC--H-----TTTLENAVNYAWNKGSVVVAAAGNN---------------------------SYENVIAVGAVDQY-------------DRLAS----------FSNYG----------------------------T------------WVDVVAPGV---DIVSTITGNRYAYMSGTSMASPHVAGLAALLAS-Q-G-RNNIEIR--QAIE--Q------TA--DKI-S--------------G-T---GTYFK-YGRINSY---NAVTY---------  ------RASQ---------QI---P--WGIKAIYN----NDTLTS-T--T----GGS-GINIAVLD-T-GVN-TS-HP--D------LVNNVEQCKDF----TGATTP---INNSC-TDR-----NG-HGTHVAGTALADGGS-DQAGIYGVA--PDADLWAYKV-LLDSGSG---YSDDIAAAIRHAADQ---ATATGT--K-TIISMSLGSSA--N-----NSLISSAVNYAYSKGVLIVAAAGNSGY-----------S---QGTI--GYPGALPNAIAVAALENV--------QQNGTYRVAD----------YSSRG----------------------------YISTAGDYVIQEGDIEISAPGS---SVYSTWYNGGYNTISGTSMATPHVSGLAAKIWAEN-PSLSNTQLR--SNLQ--E------RAKSVDI-KGGY----------GA-AIGDDYASG-FGFARVQ-----------------  AGTAKG-----------------HNPTEFPTIYD-----------A--S-SA-PTAA-NTTVGIITIGGVSQTLQDLQQFTSANGLA--SVNTQTIQTGSSN-G-----D-----Y-SDD-Q--QGQGEWDLDSQSIV------------GSAGGAVQQLLFYMAD------QSASGNTGLTQAFNQAVSDN--V--------AKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDG-ST-Y-SV--SWPASSPNVIAVGGTTLYTTSAGAYSN----ETVWNEGLDSNGKLWATGGGYSVYESKPSWQSVVSGTP-------GRRL------------LPDISFDAAQGTGALIYNY-GQLQQIGGTSLASPIFVGLWARLQSAN-SNSLGF--PAAS--FYSAISSTPSLV--HDV-KSGNNGY-GGY-GYNA-GTGWDYPTG-WGSLDIA---KLSAYIRSNGF---  ----------A-------QSV---P--WGISRVQ-----------APAAHNRGLTGS-GVKVAVLD-T-GIS-T--HP--D------L--NIRGGASF----VP----GE-P--ST-QDG-----NG-HGTHVAGTIAALN---NSIGVLGVA--PSAELYAVKV-LGASGSG---SVSSIAQGLEWAGNN---G--------MHVANLSLGSPS--P-----SATLEQAVNSATSRGVLVVAASGNSGA----------------GSI--SYPARYANAMAVGATDQN-------------NNRAS----------FSQYG----------------------------A------------GLDIVAPGV---NVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKN-PSWSNVQIR--NHLK--N------TA--TSL----------------G-S---TNLYG-SGLVNAE---AATR----------  -AAPTA-----------------YTPLDVAQAYQ-----------F--P-EG-LDGQ-GQCIAIIELGGGYD-ETSLAQYFASLGVS--APQVVSVSVDG---A-----T-----N-QPTGDPNGPDGEVELDIEVAG------------ALA--PGAKIAVYFAP------N---TDAGFLNAITTAVHDPTHK--------PSIVSISWGGPEDSWAP-ASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQ----DG--L-Y-HV--DFPAASPYVLACGGTRLVAS-AGRIER----ETVWNDGPD----GGSTGGGVSRIFPLPSWQERANVPPSANPGAGSGRG------------VPDVAGNADPATGYEVVID-GETTVIGGTSAVAPLFAALVARINQKL-GKPVGY--LNPT--LYQL---PPEVF--HDI-TEGNNDIANRARIYQA-GPGWDPCTG-LGSPIGI---RLLQALLP------  -----------AAQTN----A---P--WGLARISSTSPG-TST---YYYD--ESAGQ-GSCVYVID-T-GIE-AS-HP--E------FEGRAQMVKTY----Y-----YS----S--RDG-----NG-HGTHCAGTVGSR--------TYGVA--KKTQLFGVKV-LDDNGSG---QYSTIIAGMDFVASD---KNNRNCPKG-VVASLSLGGGY--S-----SS-VNSAAARLQSSGVMVAVAAGNNNA----------------D-ARNYSPASEPSVCTVGASDRY-------------DRRSS----------FSNYG----------------------------S------------VLDIFGPGT---DILSTWIGGSTRSISGTSMATPHVAGLAAYLMTLGK--TTAASAC--RYIA--D------TA--NKGDLSN------------IPF---GT--VN-LLAYNNYQA--------------  ----------A-------QSV---P--YGVSQIK-----------APALHSQGYTGS-NVKVAVID-S-GID-SS-HP--D------L--KVAGGASM----VP----SE-T--NPFQDN-----NS-HGTHVAGTVAALN---NSIGVLGVA--PSASLYAVKV-LGADGSG---QYSWIINGIEWAIAN---N--------MDVINMSLGGPS--G-----SAALKAAVDKAVASGVVVVAAAGNEGT-----------SG-SSSTV--GYPGKYPSVIAVGAVDSS-------------NQRAS----------FSSVG----------------------------P------------ELDVMAPGV---SIQSTLPGNKYGAYNGTSMASPHVAGAAALILSKH-PNWTNTQVR--SSLE--N------TT--TKL----------------G-D---SFYYG-KGLINVQ---AAAQH--HH--HHH  ----------A-------QSV---P--YGISQIK-----------APALHSQGYTGS-NVKVAVID-S-GID-SS-HP--D------L--NVRGGASF----VP----SE-T--NPYQDG-----SS-HGTHVAGTIAALN---NSIGVLGVS--PSASLYAVKV-LDSTGSG---QYSWIINGIEWAISN---N--------MDVINMSLGGPT--G-----STALKTVVDKAVSSGIVVAAAAGNEGS-----------SG-STSTV--GYPAKYPSTIAVGAVNSS-------------NQRAS----------FSSAG----------------------------S------------ELDVMAPGV---SIQSTLPGGTYGAYNGTCMATPHVAGAAALILSKH-PTWTNAQVR--DRLE--S------TA--TYL----------------G-N---SFYYG-KGLINVQ---AAAQ----------  -----------YTP--NDPYFSSRQ--YGPQKIQ-----------APQAWDI-AEGS-GAKIAIVD-T-GVQ-SN-HP--D------LAGKVVGGWDF----VD------NDS-TP-QNG-----NG-HGTHCAGIAAAVT--NNSTGIAGTA--PKASILAVRV-LDNSGSG---TWTAVANGITYAADQ---G--------AKVISLSLGGTV--G-----NSGLQQAVNYAWNKGSVVVAAAGNAGN----------------TAP--NYPAYYSNAIAVASTDQN-------------DNKSS----------FSTYG----------------------------S------------WVDVAAPGS---SIYSTYPTSTYASLSGTSMATPHVAGVAGLLAS-Q-G-RSASNIR--AAIE--N------TA--DKI-S--------------G-T---GTYWA-KGRVNAY---KAVQY---------

Download the alignment in fasta format
Columns in green are common core regions (i.e., columns with no gaps and the maximum pairwise residue distance < 4Å).

Metrics of the alignment

Visualization of the alignment

    Total 11 input structures:      1bh6a.atm 1csee.atm 1dbia.atm 1ea7a.atm 1ga6a.atm 1gci.atm 1gt91.atm 1ic6a.atm 1lw6e.atm 1scja.atm 1thm.atm

    Click on the corresponding buttons to show different regions (the default show is for the common core region).

    

    






    Download the superimposed structure file

Reference

R. Dong, S. Pan, Z. Peng, Y. Zhang and J. Yang, mTM-align: a server for fast protein structure database searching and multiple protein structure alignment, submitted, 2017.

R. Dong, Z. Peng, Y. Zhang and J. Yang, mTM-align: an algorithm for fast and accurate multiple protein structure alignment, Bioinformatics, 2017 (in press).