Multiple structure alignment

d1a6m__.ent d1alla_.ent d1allb_.ent d1ash__.ent d1b8da_.ent d1cg5a_.ent d1cg5b_.ent d1cqxa1.ent d1d8ua_.ent d1ew6a_.ent d1gcva_.ent d1gvha1.ent d1h97a_.ent d1hlb__.ent d1irda_.ent d1irdb_.ent d1it2a_.ent d1itha_.ent d1jboa_.ent d1jl7a_.ent d1la6a_.ent d1mba__.ent d2gdm__.ent d2lhb__.ent d3sdha_.ent

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300  123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|123456789|12  -----------------------------------------------------------V-LSE--GEWQLVLHVWAKVE-A------D-VAGHGQDILIRLFKSHPETL------EKFDRF--K--H-LKTEAEMKA---SED--LK--KH-GVT-VLTA-LGAI-LK--KK------------G--H-HEAE----LK-PLA-QS--HA--TK-H---KIPIKY--LEFISEAIIHVL-H------SR-HPG-DFGADAQGAMNKALELFRKDIA-A-K-YKELG-------------Y  --S--------------------------IVTKSIVNADAEARYLSPGELDRIKSFVT-----SGER--R--VRIAETMT-G------A-RERIIKQAGDQLFGKRPD-VVSPG--GNAYGA---------------------D-MT---ATCL-RDLD-YYLRLI-TY---GIVAGD-------V--TPIEEIG---VV-G-VREM--YK---SLG---TPI--EAIA-EGVRAMKSVATS---------L----LSGADAAEAGSYFDYLIGA-MS-----------------------  MQD--------------------------AITSVINSSDVQGKYLDASAIQKLKAYFA-----TGEL--R--VRAATTIS-A------N-AANIVKEAVAKSLL-YSD-VTRPG--GNMYTT---------------------R-RY---AACI-RDLD-YYLRYA-TY---AMLAGD-------P--SILDERV---LN-G-LKET--YN---SLG---VPI--GATV-QAIQAMKEVTAG---------L----VGGGAGKEMGIYFDYICSG-LS-----------------------  --------------------------------------------------------------AN--KTRELCMKSLEHAK-V--DTSNE-ARQDGIDLYKHMFENYPPLR------KYFKSR--E--E-YTAE-DV-Q-N-DPF--FA--KQ-GQK-ILLA-CHVL-CA--TY----D-----D-R--ETFNAY----TR-ELL-DR--HARD-H-V---HMPPEV--WTDFWKLFEEYL-G------KK-TT---LDEPTKQAWHEIGREFAKEIN-K----------------------  MKS--------------------------VITTTISAADAAGRFPSSSDLESIQGNIQ-----RAAA--R--LEAAQKLS-G------N-HEAVVKEAGDACFAKYSY-LK-NAG-EAGDSP---------------------E-KI---NKCY-RDID-HYMRLI-NY---SLVVGG-------T--GPVDEWG---IA-G-SREV--YR---ALN---LPG--SAYI-AAFTFTRDR-LCVPR------D----MSSQAGVEFTSALDYVINS-LC-----------------------  -----------------------------------------------------------V-LSS--QNKKAIEELGNLIK-A------N-AEAWGADALARLFELHPQTK------TYFSKF-----S-G----FEAC---NEQ--VK--KH-GKR-VMNA-LADA-TH--HL------------D--N-LHLH----LE-DLA-RK--HG--EN-L---LVDPHN--FHLFADCIVVTL-A------VN-L-Q-AFTPVTHCAVDKFLELVAYELS-S-C-Y---R--------------  -------------------------V---------------------------------K-LSE--DQEHYIKGVWKDV---------D-HKQITAKALERVFVVYPWTT------RLFSKL-----QGL----FSAN---DIG--VQ--QH-ADK-VQRA-LGEA-ID--DL------------K--K-VEIN----FQ-NLS-GK--HQ---E-I---GVDTQN--FKLLGQTFMVEL-A------LH-YKK-TFRPKEHAAAYKFFRLVAEALS-S-N-Y---H--------------  -----------------------------------------------------------M-LTQ--KTKDIVKATAPVLA-E------H-GYDIIKCFYQRMFEAHPELK------NVF-NM---A----------------HQ---EQGQQ-QQA-LARA-VYAY-AE--NI----E-----D-P--NSLMAV----LK-NIA-NK--HA---S-L---GVKPEQ--YPIVGEHLLAAI-K------EVLGN--AATDDIISAWAQAYGNLADVLM-G-M-E---SEL-YERSAEQPGG-  ---------------ALVEDNNAVA----------------------------------VSFSE--EQEALVLKSWAILK-K------D-SANIALRFFLKIFEVAPSAS------QMFSFLRNS--D-V----PL-E---KNP------KL-KTH-AM-SVFV-MTCEAAAQ----LRK---AGK----VTVR-DTT-LKRLG-AT--HL---K-Y---GVGDAH--FEVVKFALLDTI-K------EE-VPADMWSPAMKSAWSEAYDHLVAAIK-Q-E-M---KPAE-----------  ----------------------------------------------------------------------GFKQDIATIR-G------D-LRTYAQDIFLAFLNKYPDER------RYFKNY-----V-GKSDQEL-K-S-MAK--FG--DH-TEK-VFNL-MMEV-AD--RA----TD-CVP-------LASD----AN-TLV-QMKQHS---------SLTTGN--FEKLFVALVEYM-R---A--SG-QS---F---DSQSWDRFGKNLVSALS-SAG-M-----------------K  -----------------------------------------------------------A-FTA--CEKQTIGKIAQVLA-K------S-PEAYGAECLARLFVTHPGSK------SYFE-Y-----K-D----YSAA---GAK--VQ--VH-GGK-VIRA-VVKA-AE--HV------------D--D-LHSH----LE-TLA-LT--HG--KK-L---LVDPQN--FPMLSECIIVTL-A------TH-L-T-EFSPDTHCAVDKLLSAICQELS-S-R-Y---R--------------  -----------------------------------------------------------M-LDA--QTIATVKATIPLLV-E------T-GPKLTAHFYDRMFTHNPELK------EIF-NM--SNQ---------------RN---G--DQ-REA-LFNAIAAYA-S---NI----E-----N-L--PALLPA----VE-KIA-QK--HT---S-F---QIKPEQ--YNIVGEHLLATL-D------EM-FS---PGQEVLDAWGKAYGVLANVFI-N-R-E---AEI-YNENASKA---  -----------------------------------------------------------T-LTK--HEQDILLKELGPHVDT--P--AH-IVETGLGAYHALFTAHPQYI------SHFSRL--E--G-HTIE-NVMQ---SEG--IK--HY-ART-LTEA-IVHM-LK--EI----S-------NDAE-VKKI----AA-QYG-KD--HT---S-R---KVTKDE--FMSGEPIFTKYFQN-------L-V----KDAEGKAAVEKFLKHVFPMMA-A-E-I------------------  ---GGTLAIQ-----------------AQG-----------------------------D-LTL--AQKKIVRKTWHQLM-RNK----T---SFVTDVFIRIFAYDPSAQ------NKFPQM--A--G-M----SA-S-QLRSSRQMQ--AH-AIR-VSSI-MSEY-VE--EL----D-------S--DILPEL----LA-TLA-RT--HD---L-N---KVGADH--YNLFAKVLMEAL-Q------AE-LGS-DFNEKTRDAWAKAFSVVQAVLL-----V---K-H---G--------  -----------------------------------------------------------V-LSP--ADKTNVKAAWGKVG-A------H-AGEYGAEALERMFLSFPTTK------TYFPHF-----D-L----SH-G---SAQ--VK--GH-GKK-VADA-LTNA-VA--HV------------D--D-MPNA----LS-ALS-DL--HA--HK-L---RVDPVN--FKLLSHCLLVTL-A------AH-LPA-EFTPAVHASLDKFLASVSTVLT-S-K-Y---R--------------  -------------------------V---------------------------------H-LTP--EEKSAVTALWGKV---------N-VDEVGGEALGRLLVVYPWTQ------RFFESF-----GDLSTPDAVMG---NPK--VK--AH-GKK-VLGA-FSDG-LA--HL------------D--N-LKGT----FA-TLS-EL--HC--DK-L---HVDPEN--FRLLGNVLVCVL-A------HH-FGK-EFTPPVQAAYQKVVAGVANALA-H-K-Y---H--------------  ----------PIIDQG-------P-L--------------------------------PT-LTD--GDKKAINKIWPKIY-K------E-YEQYSLNILLRFLKCFPQAQ------ASFPKF--S--T-KKS--NLEQ---DPE--VK--HQ-AVV-IFNK-VNEI-IN--SM----D-----N-Q--EEIIKS----LK-DLS-QK--HK--TV-F---KVDSIW--FKELSSIFVSTI-D----G--------------GAEFEKLFSIICILLR-S-A-Y------------------  -----------------------------------------------------------G-LTA--AQIKAIQDHWFLNIKG------C-LQAAADSIFFKYLTAYPGDL------AFFHKF--S--S-VPLY-GLRS---NPA--YK--AQ-TLT-VINY-LDKV-VD--AL----G-------G--N-AGAL----MK-AKV-PS--HD---A-M---GITPKH--FGQLLKLVGGVFQE------EF-S----ADPTTVAAWGDAAGVLVAAM--K----------------------  MKT--------------------------PITEAIAAADTQGRFLSNTELQAVDGRFK-----RAVA--S--MEAARALT-N------N-AQSLIDGAAQAVYQKFPY-TTTMQGSQYASTP---------------------E-GK---AKCA-RDIG-YYLRMV-TY---CLVAGG-------T--GPMDEYL---IA-G-LSEI--NS---TFD---LSP--SWYI-EALKYIKAN-H----------G----LTGQAAVEANAYIDYAINA-LS-----------------------  -----------------------------------------------------------G-LSA--AQRQVVASTWKDIAGA------DNGAGVGKECLSKFISAHPEMA------AVFG-F-----S-G----AS-----DPG--VA--EL-GAK-VLAQ-IGVA-VS--HL----G-----D-E-GK-MVAE----MK-AVG-VR--H---KG-YGNKHIKAEY--FEPLGASLLSAM-E------HR-IGG-KMNAAAKDAWAAAYGDISGALI-S-GLQ--S---------------  -----------------------------------------------------------S-LSD--KDKAAVRALWSKIG-K------S-SDAIGNDALSRMIVVYPQTK------IYFSHW--P--D-V----TP-G---SPN--IK--AH-GKK-VMGG-IALA-VS--KI------------D--D-LKTG----LM-ELS-EQ--HA--YK-L---RVDPSN--FKILNHCILVVI-S------TM-FPK-EFTPEAHVSLDKFLSGVALALA-E-R-Y---R--------------  -----------------------------------------------------------S-LSA--AEADLAGKSWAPVF-A------N-KNANGLDFLVALFEKFPDSA------NFFADF--K--G-KSVA-DI-K-A-SPK--LR--DV-SSR-IFTR-LNEF-VN--NA----A-----N-A--GKMSAM----LS-QFA-KE--HV---G-F---GVGSAQ--FENVRSMFPGFV-A------SV-AA---PPAGADAAWTKLFGLIIDALK-A-A-G-----------------A  -----------------------------------------------------------GALTE--SQAALVKSSWEEFN-A------N-IPKHTHRFFILVLEIAPAAK------DLFSFL--K--G-TS---EV-PQ--NNP------EL-QAH-AG-KVFK-LVYEAAIQ----LEV---TGV----VVT--DAT-LKNLG-SV--HV---S-K---GVADAH--FPVVKEAILKTI-K------EV-VGA-KWSEELNSAWTIAYDELAIVIK-K-E-M---DDA-A----------  ----------PIVDTG-------S-V--------------------------------AP-LSA--AEKTKIRSAWAPVY-S------T-YETSGVDILVKFFTSTPAAQ------EFFPKF--K--G-LTTADELKK---SAD--VR--WH-AER-IINA-VDDA-VA--SM----D-----D-T--EKMSMK----LR-NLS-GK--HA--KS-F---QVDPEY--FKVLAAVIADTV-A----AG-------------DAGFEKLMSMICILLR-S-A-Y------------------  -------SVY-------------D-AAA-------------------------------Q-LTA--DVKKDLRDSWKVIG-S------D-KKGNGVALMTTLFADNQETI------GYFKRL--G--N-V----SQGM-A-NDK--LR--GH-SIT-LMYA-LQNF-ID--QL----D-----N-P--DDLVCV----VE-KFA-VN--HI---T-R---KISAAE--FGKINGPIKKVL-A------S--KN---FGDKYANAWAKLVAVVQAA-L------------------------

Download the alignment in fasta format
Columns in green are common core regions (i.e., columns with no gaps and the maximum pairwise residue distance < 4Å).

Metrics of the alignment

Visualization of the alignment

    Total 25 input structures:      d1a6m__.ent d1alla_.ent d1allb_.ent d1ash__.ent d1b8da_.ent d1cg5a_.ent d1cg5b_.ent d1cqxa1.ent d1d8ua_.ent d1ew6a_.ent d1gcva_.ent d1gvha1.ent d1h97a_.ent d1hlb__.ent d1irda_.ent d1irdb_.ent d1it2a_.ent d1itha_.ent d1jboa_.ent d1jl7a_.ent d1la6a_.ent d1mba__.ent d2gdm__.ent d2lhb__.ent d3sdha_.ent

    Click on the corresponding buttons to show different regions (the default show is for the common core region).

    

    






    Download the superimposed structure file

Reference

R. Dong, S. Pan, Z. Peng, Y. Zhang and J. Yang, mTM-align: a server for fast protein structure database searching and multiple protein structure alignment, submitted, 2017.

R. Dong, Z. Peng, Y. Zhang and J. Yang, mTM-align: an algorithm for fast and accurate multiple protein structure alignment, Bioinformatics, 2017 (in press).