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Yang Lab
Function Annotation for BL3048484
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data_198d_2 # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num HETATM 241 O "O5'" . DC C 1 1 ? -6.625 29.190 14.119 1.00 25.37 ? 13 DC C "O5'" 1 HETATM 242 C "C5'" . DC C 1 1 ? -7.817 29.786 14.714 1.00 23.66 ? 13 DC C "C5'" 1 HETATM 243 C "C4'" . DC C 1 1 ? -8.612 28.777 15.574 1.00 22.85 ? 13 DC C "C4'" 1 HETATM 244 O "O4'" . DC C 1 1 ? -9.778 28.318 14.912 1.00 20.24 ? 13 DC C "O4'" 1 HETATM 245 C "C3'" . DC C 1 1 ? -7.764 27.583 16.070 1.00 22.92 ? 13 DC C "C3'" 1 HETATM 246 O "O3'" . DC C 1 1 ? -7.790 27.538 17.524 1.00 27.39 ? 13 DC C "O3'" 1 HETATM 247 C "C2'" . DC C 1 1 ? -8.453 26.390 15.474 1.00 20.28 ? 13 DC C "C2'" 1 HETATM 248 C "C1'" . DC C 1 1 ? -9.725 26.849 14.780 1.00 15.51 ? 13 DC C "C1'" 1 HETATM 249 N N1 . DC C 1 1 ? -9.672 26.482 13.325 1.00 10.29 ? 13 DC C N1 1 HETATM 250 C C2 . DC C 1 1 ? -9.672 25.105 12.995 1.00 6.24 ? 13 DC C C2 1 HETATM 251 O O2 . DC C 1 1 ? -9.619 24.279 13.920 1.00 8.58 ? 13 DC C O2 1 HETATM 252 N N3 . DC C 1 1 ? -9.645 24.784 11.672 1.00 4.69 ? 13 DC C N3 1 HETATM 253 C C4 . DC C 1 1 ? -9.645 25.702 10.713 1.00 5.07 ? 13 DC C C4 1 HETATM 254 N N4 . DC C 1 1 ? -9.698 25.335 9.424 1.00 5.20 ? 13 DC C N4 1 HETATM 255 C C5 . DC C 1 1 ? -9.725 27.124 11.044 1.00 6.55 ? 13 DC C C5 1 HETATM 256 C C6 . DC C 1 1 ? -9.698 27.446 12.333 1.00 7.53 ? 13 DC C C6 1 HETATM 257 P P . DG C 1 2 ? -6.492 28.134 18.351 1.00 30.46 ? 14 DG C P 1 HETATM 258 O OP1 . DG C 1 2 ? -6.916 28.134 19.806 1.00 31.16 ? 14 DG C OP1 1 HETATM 259 O OP2 . DG C 1 2 ? -6.148 29.465 17.756 1.00 29.72 ? 14 DG C OP2 1 HETATM 260 O "O5'" . DG C 1 2 ? -5.326 27.124 18.153 1.00 28.14 ? 14 DG C "O5'" 1 HETATM 261 C "C5'" . DG C 1 2 ? -5.406 25.702 18.549 1.00 24.96 ? 14 DG C "C5'" 1 HETATM 262 C "C4'" . DG C 1 2 ? -4.319 25.013 17.756 1.00 22.60 ? 14 DG C "C4'" 1 HETATM 263 O "O4'" . DG C 1 2 ? -4.478 25.197 16.367 1.00 20.79 ? 14 DG C "O4'" 1 HETATM 264 C "C3'" . DG C 1 2 ? -2.915 25.518 18.120 1.00 22.39 ? 14 DG C "C3'" 1 HETATM 265 O "O3'" . DG C 1 2 ? -2.093 24.371 18.483 1.00 23.53 ? 14 DG C "O3'" 1 HETATM 266 C "C2'" . DG C 1 2 ? -2.464 26.207 16.830 1.00 20.64 ? 14 DG C "C2'" 1 HETATM 267 C "C1'" . DG C 1 2 ? -3.180 25.335 15.772 1.00 16.84 ? 14 DG C "C1'" 1 HETATM 268 N N9 . DG C 1 2 ? -3.100 25.931 14.449 1.00 14.57 ? 14 DG C N9 1 HETATM 269 C C8 . DG C 1 2 ? -3.127 27.262 14.053 1.00 12.22 ? 14 DG C C8 1 HETATM 270 N N7 . DG C 1 2 ? -3.047 27.400 12.763 1.00 12.35 ? 14 DG C N7 1 HETATM 271 C C5 . DG C 1 2 ? -2.994 26.115 12.234 1.00 10.68 ? 14 DG C C5 1 HETATM 272 C C6 . DG C 1 2 ? -2.888 25.656 10.911 1.00 10.62 ? 14 DG C C6 1 HETATM 273 O O6 . DG C 1 2 ? -2.809 26.344 9.886 1.00 13.61 ? 14 DG C O6 1 HETATM 274 N N1 . DG C 1 2 ? -2.835 24.279 10.812 1.00 8.74 ? 14 DG C N1 1 HETATM 275 C C2 . DG C 1 2 ? -2.915 23.499 11.903 1.00 9.10 ? 14 DG C C2 1 HETATM 276 N N2 . DG C 1 2 ? -2.835 22.168 11.672 1.00 8.15 ? 14 DG C N2 1 HETATM 277 N N3 . DG C 1 2 ? -2.968 23.866 13.160 1.00 10.23 ? 14 DG C N3 1 HETATM 278 C C4 . DG C 1 2 ? -3.021 25.243 13.259 1.00 10.98 ? 14 DG C C4 1 HETATM 279 P P . DA C 1 3 ? -1.484 24.141 19.938 1.00 24.46 ? 15 DA C P 1 HETATM 280 O OP1 . DA C 1 3 ? -2.544 24.049 20.996 1.00 22.41 ? 15 DA C OP1 1 HETATM 281 O OP2 . DA C 1 3 ? -0.424 25.151 20.137 1.00 25.19 ? 15 DA C OP2 1 HETATM 282 O "O5'" . DA C 1 3 ? -0.901 22.673 19.674 1.00 22.47 ? 15 DA C "O5'" 1 HETATM 283 C "C5'" . DA C 1 3 ? -1.775 21.525 19.508 1.00 19.17 ? 15 DA C "C5'" 1 HETATM 284 C "C4'" . DA C 1 3 ? -1.113 20.470 18.682 1.00 17.35 ? 15 DA C "C4'" 1 HETATM 285 O "O4'" . DA C 1 3 ? -1.166 20.745 17.260 1.00 16.34 ? 15 DA C "O4'" 1 HETATM 286 C "C3'" . DA C 1 3 ? 0.344 20.332 19.012 1.00 17.73 ? 15 DA C "C3'" 1 HETATM 287 O "O3'" . DA C 1 3 ? 0.583 18.909 18.979 1.00 20.26 ? 15 DA C "O3'" 1 HETATM 288 C "C2'" . DA C 1 3 ? 1.033 21.158 17.921 1.00 14.80 ? 15 DA C "C2'" 1 HETATM 289 C "C1'" . DA C 1 3 ? 0.132 20.974 16.764 1.00 13.97 ? 15 DA C "C1'" 1 HETATM 290 N N9 . DA C 1 3 ? 0.159 22.214 15.904 1.00 10.53 ? 15 DA C N9 1 HETATM 291 C C8 . DA C 1 3 ? 0.212 23.499 16.268 1.00 11.43 ? 15 DA C C8 1 HETATM 292 N N7 . DA C 1 3 ? 0.265 24.325 15.276 1.00 10.40 ? 15 DA C N7 1 HETATM 293 C C5 . DA C 1 3 ? 0.265 23.499 14.152 1.00 8.68 ? 15 DA C C5 1 HETATM 294 C C6 . DA C 1 3 ? 0.371 23.774 12.796 1.00 8.19 ? 15 DA C C6 1 HETATM 295 N N6 . DA C 1 3 ? 0.397 25.013 12.333 1.00 7.84 ? 15 DA C N6 1 HETATM 296 N N1 . DA C 1 3 ? 0.371 22.673 12.003 1.00 10.57 ? 15 DA C N1 1 HETATM 297 C C2 . DA C 1 3 ? 0.344 21.433 12.466 1.00 7.99 ? 15 DA C C2 1 HETATM 298 N N3 . DA C 1 3 ? 0.212 21.112 13.755 1.00 9.01 ? 15 DA C N3 1 HETATM 299 C C4 . DA C 1 3 ? 0.212 22.214 14.549 1.00 9.29 ? 15 DA C C4 1 HETATM 300 P P . DT C 1 4 ? 1.908 18.083 19.244 1.00 20.17 ? 16 DT C P 1 HETATM 301 O OP1 . DT C 1 4 ? 1.563 16.660 19.508 1.00 22.79 ? 16 DT C OP1 1 HETATM 302 O OP2 . DT C 1 4 ? 2.703 18.726 20.302 1.00 20.43 ? 16 DT C OP2 1 HETATM 303 O "O5'" . DT C 1 4 ? 2.544 18.175 17.789 1.00 20.31 ? 16 DT C "O5'" 1 HETATM 304 C "C5'" . DT C 1 4 ? 1.828 17.395 16.764 1.00 17.40 ? 16 DT C "C5'" 1 HETATM 305 C "C4'" . DT C 1 4 ? 2.517 17.303 15.474 1.00 16.12 ? 16 DT C "C4'" 1 HETATM 306 O "O4'" . DT C 1 4 ? 2.438 18.450 14.648 1.00 16.73 ? 16 DT C "O4'" 1 HETATM 307 C "C3'" . DT C 1 4 ? 4.001 17.027 15.574 1.00 16.87 ? 16 DT C "C3'" 1 HETATM 308 O "O3'" . DT C 1 4 ? 4.293 15.880 14.714 1.00 17.40 ? 16 DT C "O3'" 1 HETATM 309 C "C2'" . DT C 1 4 ? 4.637 18.312 15.144 1.00 12.70 ? 16 DT C "C2'" 1 HETATM 310 C "C1'" . DT C 1 4 ? 3.657 18.909 14.152 1.00 11.65 ? 16 DT C "C1'" 1 HETATM 311 N N1 . DT C 1 4 ? 3.710 20.378 14.119 1.00 7.71 ? 16 DT C N1 1 HETATM 312 C C2 . DT C 1 4 ? 3.683 21.066 12.928 1.00 8.15 ? 16 DT C C2 1 HETATM 313 O O2 . DT C 1 4 ? 3.604 20.470 11.804 1.00 7.80 ? 16 DT C O2 1 HETATM 314 N N3 . DT C 1 4 ? 3.683 22.443 12.961 1.00 7.53 ? 16 DT C N3 1 HETATM 315 C C4 . DT C 1 4 ? 3.763 23.132 14.119 1.00 6.84 ? 16 DT C C4 1 HETATM 316 O O4 . DT C 1 4 ? 3.710 24.417 14.053 1.00 10.05 ? 16 DT C O4 1 HETATM 317 C C5 . DT C 1 4 ? 3.789 22.443 15.342 1.00 6.59 ? 16 DT C C5 1 HETATM 318 C C7 . DT C 1 4 ? 3.922 23.132 16.665 1.00 4.79 ? 16 DT C C7 1 HETATM 319 C C6 . DT C 1 4 ? 3.763 21.112 15.309 1.00 7.56 ? 16 DT C C6 1 HETATM 320 P P . DC C 1 5 ? 5.406 14.778 14.879 1.00 20.57 ? 17 DC C P 1 HETATM 321 O OP1 . DC C 1 5 ? 4.955 13.539 14.218 1.00 19.74 ? 17 DC C OP1 1 HETATM 322 O OP2 . DC C 1 5 ? 5.724 14.687 16.301 1.00 17.05 ? 17 DC C OP2 1 HETATM 323 O "O5'" . DC C 1 5 ? 6.572 15.421 13.953 1.00 18.31 ? 17 DC C "O5'" 1 HETATM 324 C "C5'" . DC C 1 5 ? 6.280 15.467 12.532 1.00 16.00 ? 17 DC C "C5'" 1 HETATM 325 C "C4'" . DC C 1 5 ? 7.287 16.477 11.936 1.00 12.64 ? 17 DC C "C4'" 1 HETATM 326 O "O4'" . DC C 1 5 ? 6.810 17.762 12.135 1.00 13.99 ? 17 DC C "O4'" 1 HETATM 327 C "C3'" . DC C 1 5 ? 8.718 16.385 12.598 1.00 13.27 ? 17 DC C "C3'" 1 HETATM 328 O "O3'" . DC C 1 5 ? 9.804 16.431 11.705 1.00 13.23 ? 17 DC C "O3'" 1 HETATM 329 C "C2'" . DC C 1 5 ? 8.691 17.624 13.491 1.00 10.53 ? 17 DC C "C2'" 1 HETATM 330 C "C1'" . DC C 1 5 ? 7.737 18.542 12.796 1.00 8.59 ? 17 DC C "C1'" 1 HETATM 331 N N1 . DC C 1 5 ? 7.419 19.735 13.623 1.00 5.21 ? 17 DC C N1 1 HETATM 332 C C2 . DC C 1 5 ? 7.128 20.883 12.862 1.00 2.27 ? 17 DC C C2 1 HETATM 333 O O2 . DC C 1 5 ? 6.969 20.883 11.639 1.00 2.51 ? 17 DC C O2 1 HETATM 334 N N3 . DC C 1 5 ? 7.048 22.030 13.491 1.00 3.39 ? 17 DC C N3 1 HETATM 335 C C4 . DC C 1 5 ? 7.075 22.168 14.846 1.00 2.09 ? 17 DC C C4 1 HETATM 336 N N4 . DC C 1 5 ? 6.995 23.407 15.342 1.00 2.91 ? 17 DC C N4 1 HETATM 337 C C5 . DC C 1 5 ? 7.366 21.020 15.640 1.00 2.18 ? 17 DC C C5 1 HETATM 338 C C6 . DC C 1 5 ? 7.472 19.827 14.978 1.00 3.25 ? 17 DC C C6 1 HETATM 339 P P . DG C 1 6 ? 10.467 15.100 11.011 1.00 12.50 ? 18 DG C P 1 HETATM 340 O OP1 . DG C 1 6 ? 9.433 14.044 10.779 1.00 18.63 ? 18 DG C OP1 1 HETATM 341 O OP2 . DG C 1 6 ? 11.606 14.778 11.870 1.00 15.78 ? 18 DG C OP2 1 HETATM 342 O "O5'" . DG C 1 6 ? 10.944 15.650 9.589 1.00 13.68 ? 18 DG C "O5'" 1 HETATM 343 C "C5'" . DG C 1 6 ? 10.122 16.339 8.663 1.00 14.29 ? 18 DG C "C5'" 1 HETATM 344 C "C4'" . DG C 1 6 ? 10.970 16.981 7.572 1.00 13.09 ? 18 DG C "C4'" 1 HETATM 345 O "O4'" . DG C 1 6 ? 11.527 18.221 7.936 1.00 13.85 ? 18 DG C "O4'" 1 HETATM 346 C "C3'" . DG C 1 6 ? 12.189 16.155 7.175 1.00 12.70 ? 18 DG C "C3'" 1 HETATM 347 O "O3'" . DG C 1 6 ? 12.428 16.293 5.786 1.00 16.11 ? 18 DG C "O3'" 1 HETATM 348 C "C2'" . DG C 1 6 ? 13.328 16.752 8.035 1.00 12.46 ? 18 DG C "C2'" 1 HETATM 349 C "C1'" . DG C 1 6 ? 12.958 18.221 8.101 1.00 9.27 ? 18 DG C "C1'" 1 HETATM 350 N N9 . DG C 1 6 ? 13.170 18.863 9.424 1.00 7.41 ? 18 DG C N9 1 HETATM 351 C C8 . DG C 1 6 ? 13.170 18.312 10.680 1.00 3.26 ? 18 DG C C8 1 HETATM 352 N N7 . DG C 1 6 ? 13.302 19.184 11.639 1.00 3.63 ? 18 DG C N7 1 HETATM 353 C C5 . DG C 1 6 ? 13.434 20.424 10.945 1.00 2.29 ? 18 DG C C5 1 HETATM 354 C C6 . DG C 1 6 ? 13.593 21.709 11.474 1.00 2.30 ? 18 DG C C6 1 HETATM 355 O O6 . DG C 1 6 ? 13.673 22.030 12.631 1.00 4.60 ? 18 DG C O6 1 HETATM 356 N N1 . DG C 1 6 ? 13.673 22.673 10.449 1.00 2.25 ? 18 DG C N1 1 HETATM 357 C C2 . DG C 1 6 ? 13.593 22.351 9.126 1.00 2.00 ? 18 DG C C2 1 HETATM 358 N N2 . DG C 1 6 ? 13.699 23.361 8.266 1.00 2.47 ? 18 DG C N2 1 HETATM 359 N N3 . DG C 1 6 ? 13.434 21.158 8.630 1.00 3.29 ? 18 DG C N3 1 HETATM 360 C C4 . DG C 1 6 ? 13.355 20.194 9.622 1.00 4.19 ? 18 DG C C4 1 HETATM 361 O "O5'" . DC D 1 1 ? 13.514 30.842 12.862 1.00 18.49 ? 19 DC D "O5'" 1 HETATM 362 C "C5'" . DC D 1 1 ? 12.401 31.117 11.970 1.00 17.23 ? 19 DC D "C5'" 1 HETATM 363 C "C4'" . DC D 1 1 ? 12.799 30.888 10.515 1.00 17.18 ? 19 DC D "C4'" 1 HETATM 364 O "O4'" . DC D 1 1 ? 13.858 29.970 10.349 1.00 13.81 ? 19 DC D "O4'" 1 HETATM 365 C "C3'" . DC D 1 1 ? 11.659 30.383 9.688 1.00 17.46 ? 19 DC D "C3'" 1 HETATM 366 O "O3'" . DC D 1 1 ? 11.739 30.796 8.299 1.00 20.80 ? 19 DC D "O3'" 1 HETATM 367 C "C2'" . DC D 1 1 ? 11.898 28.869 9.721 1.00 15.57 ? 19 DC D "C2'" 1 HETATM 368 C "C1'" . DC D 1 1 ? 13.434 28.685 9.919 1.00 11.71 ? 19 DC D "C1'" 1 HETATM 369 N N1 . DC D 1 1 ? 13.567 27.629 10.945 1.00 6.81 ? 19 DC D N1 1 HETATM 370 C C2 . DC D 1 1 ? 13.673 26.344 10.482 1.00 2.97 ? 19 DC D C2 1 HETATM 371 O O2 . DC D 1 1 ? 13.699 26.115 9.291 1.00 5.65 ? 19 DC D O2 1 HETATM 372 N N3 . DC D 1 1 ? 13.752 25.380 11.407 1.00 4.15 ? 19 DC D N3 1 HETATM 373 C C4 . DC D 1 1 ? 13.832 25.610 12.730 1.00 2.00 ? 19 DC D C4 1 HETATM 374 N N4 . DC D 1 1 ? 13.938 24.600 13.623 1.00 2.04 ? 19 DC D N4 1 HETATM 375 C C5 . DC D 1 1 ? 13.699 26.941 13.193 1.00 2.00 ? 19 DC D C5 1 HETATM 376 C C6 . DC D 1 1 ? 13.620 27.905 12.300 1.00 5.80 ? 19 DC D C6 1 HETATM 377 P P . DG D 1 2 ? 10.546 31.760 7.704 1.00 21.42 ? 20 DG D P 1 HETATM 378 O OP1 . DG D 1 2 ? 11.209 32.540 6.613 1.00 23.63 ? 20 DG D OP1 1 HETATM 379 O OP2 . DG D 1 2 ? 9.937 32.540 8.828 1.00 23.67 ? 20 DG D OP2 1 HETATM 380 O "O5'" . DG D 1 2 ? 9.486 30.750 7.109 1.00 20.24 ? 20 DG D "O5'" 1 HETATM 381 C "C5'" . DG D 1 2 ? 9.778 29.603 6.315 1.00 19.53 ? 20 DG D "C5'" 1 HETATM 382 C "C4'" . DG D 1 2 ? 8.691 28.547 6.415 1.00 15.89 ? 20 DG D "C4'" 1 HETATM 383 O "O4'" . DG D 1 2 ? 8.744 27.905 7.704 1.00 15.54 ? 20 DG D "O4'" 1 HETATM 384 C "C3'" . DG D 1 2 ? 7.313 29.190 6.282 1.00 16.50 ? 20 DG D "C3'" 1 HETATM 385 O "O3'" . DG D 1 2 ? 6.519 28.364 5.423 1.00 20.09 ? 20 DG D "O3'" 1 HETATM 386 C "C2'" . DG D 1 2 ? 6.810 29.144 7.737 1.00 14.69 ? 20 DG D "C2'" 1 HETATM 387 C "C1'" . DG D 1 2 ? 7.419 27.813 8.200 1.00 9.70 ? 20 DG D "C1'" 1 HETATM 388 N N9 . DG D 1 2 ? 7.366 27.629 9.655 1.00 7.33 ? 20 DG D N9 1 HETATM 389 C C8 . DG D 1 2 ? 7.366 28.547 10.713 1.00 5.90 ? 20 DG D C8 1 HETATM 390 N N7 . DG D 1 2 ? 7.287 28.042 11.903 1.00 6.05 ? 20 DG D N7 1 HETATM 391 C C5 . DG D 1 2 ? 7.181 26.666 11.639 1.00 2.02 ? 20 DG D C5 1 HETATM 392 C C6 . DG D 1 2 ? 6.995 25.610 12.499 1.00 2.28 ? 20 DG D C6 1 HETATM 393 O O6 . DG D 1 2 ? 6.969 25.656 13.722 1.00 4.95 ? 20 DG D O6 1 HETATM 394 N N1 . DG D 1 2 ? 6.969 24.371 11.837 1.00 2.00 ? 20 DG D N1 1 HETATM 395 C C2 . DG D 1 2 ? 6.995 24.233 10.515 1.00 2.00 ? 20 DG D C2 1 HETATM 396 N N2 . DG D 1 2 ? 6.942 23.040 9.986 1.00 4.77 ? 20 DG D N2 1 HETATM 397 N N3 . DG D 1 2 ? 7.154 25.243 9.655 1.00 2.86 ? 20 DG D N3 1 HETATM 398 C C4 . DG D 1 2 ? 7.234 26.390 10.283 1.00 3.14 ? 20 DG D C4 1 HETATM 399 P P . DA D 1 3 ? 5.644 28.869 4.199 1.00 18.49 ? 21 DA D P 1 HETATM 400 O OP1 . DA D 1 3 ? 6.413 29.373 3.042 1.00 20.73 ? 21 DA D OP1 1 HETATM 401 O OP2 . DA D 1 3 ? 4.717 29.832 4.861 1.00 20.36 ? 21 DA D OP2 1 HETATM 402 O "O5'" . DA D 1 3 ? 4.955 27.492 3.736 1.00 21.90 ? 21 DA D "O5'" 1 HETATM 403 C "C5'" . DA D 1 3 ? 5.777 26.528 3.042 1.00 20.75 ? 21 DA D "C5'" 1 HETATM 404 C "C4'" . DA D 1 3 ? 5.406 25.151 3.538 1.00 20.27 ? 21 DA D "C4'" 1 HETATM 405 O "O4'" . DA D 1 3 ? 5.565 25.059 4.960 1.00 19.95 ? 21 DA D "O4'" 1 HETATM 406 C "C3'" . DA D 1 3 ? 3.948 24.830 3.207 1.00 22.61 ? 21 DA D "C3'" 1 HETATM 407 O "O3'" . DA D 1 3 ? 3.895 23.545 2.513 1.00 25.20 ? 21 DA D "O3'" 1 HETATM 408 C "C2'" . DA D 1 3 ? 3.286 24.876 4.563 1.00 20.33 ? 21 DA D "C2'" 1 HETATM 409 C "C1'" . DA D 1 3 ? 4.346 24.600 5.588 1.00 14.92 ? 21 DA D "C1'" 1 HETATM 410 N N9 . DA D 1 3 ? 4.081 25.243 6.911 1.00 10.88 ? 21 DA D N9 1 HETATM 411 C C8 . DA D 1 3 ? 3.948 26.574 7.307 1.00 7.89 ? 21 DA D C8 1 HETATM 412 N N7 . DA D 1 3 ? 3.736 26.757 8.597 1.00 8.78 ? 21 DA D N7 1 HETATM 413 C C5 . DA D 1 3 ? 3.816 25.426 9.093 1.00 7.54 ? 21 DA D C5 1 HETATM 414 C C6 . DA D 1 3 ? 3.630 24.921 10.415 1.00 8.05 ? 21 DA D C6 1 HETATM 415 N N6 . DA D 1 3 ? 3.445 25.610 11.540 1.00 8.30 ? 21 DA D N6 1 HETATM 416 N N1 . DA D 1 3 ? 3.657 23.590 10.482 1.00 5.83 ? 21 DA D N1 1 HETATM 417 C C2 . DA D 1 3 ? 3.895 22.810 9.424 1.00 4.60 ? 21 DA D C2 1 HETATM 418 N N3 . DA D 1 3 ? 4.054 23.177 8.167 1.00 8.50 ? 21 DA D N3 1 HETATM 419 C C4 . DA D 1 3 ? 4.001 24.554 8.068 1.00 8.63 ? 21 DA D C4 1 HETATM 420 P P . DT D 1 4 ? 2.517 23.086 1.752 1.00 27.29 ? 22 DT D P 1 HETATM 421 O OP1 . DT D 1 4 ? 2.835 22.168 0.628 1.00 25.48 ? 22 DT D OP1 1 HETATM 422 O OP2 . DT D 1 4 ? 1.802 24.325 1.422 1.00 28.59 ? 22 DT D OP2 1 HETATM 423 O "O5'" . DT D 1 4 ? 1.775 22.260 2.943 1.00 24.92 ? 22 DT D "O5'" 1 HETATM 424 C "C5'" . DT D 1 4 ? 2.438 21.020 3.373 1.00 21.33 ? 22 DT D "C5'" 1 HETATM 425 C "C4'" . DT D 1 4 ? 1.722 20.515 4.662 1.00 19.25 ? 22 DT D "C4'" 1 HETATM 426 O "O4'" . DT D 1 4 ? 1.855 21.387 5.753 1.00 16.79 ? 22 DT D "O4'" 1 HETATM 427 C "C3'" . DT D 1 4 ? 0.238 20.332 4.464 1.00 20.65 ? 22 DT D "C3'" 1 HETATM 428 O "O3'" . DT D 1 4 ? 0.026 18.955 4.067 1.00 25.37 ? 22 DT D "O3'" 1 HETATM 429 C "C2'" . DT D 1 4 ? -0.371 20.745 5.753 1.00 18.22 ? 22 DT D "C2'" 1 HETATM 430 C "C1'" . DT D 1 4 ? 0.768 21.158 6.646 1.00 12.93 ? 22 DT D "C1'" 1 HETATM 431 N N1 . DT D 1 4 ? 0.556 22.443 7.373 1.00 9.43 ? 22 DT D N1 1 HETATM 432 C C2 . DT D 1 4 ? 0.530 22.397 8.729 1.00 7.86 ? 22 DT D C2 1 HETATM 433 O O2 . DT D 1 4 ? 0.636 21.387 9.390 1.00 10.48 ? 22 DT D O2 1 HETATM 434 N N3 . DT D 1 4 ? 0.424 23.590 9.390 1.00 8.87 ? 22 DT D N3 1 HETATM 435 C C4 . DT D 1 4 ? 0.291 24.830 8.795 1.00 7.24 ? 22 DT D C4 1 HETATM 436 O O4 . DT D 1 4 ? 0.159 25.793 9.589 1.00 6.35 ? 22 DT D O4 1 HETATM 437 C C5 . DT D 1 4 ? 0.238 24.830 7.373 1.00 7.19 ? 22 DT D C5 1 HETATM 438 C C7 . DT D 1 4 ? 0.132 26.115 6.613 1.00 6.42 ? 22 DT D C7 1 HETATM 439 C C6 . DT D 1 4 ? 0.397 23.636 6.712 1.00 8.14 ? 22 DT D C6 1 HETATM 440 P P . DC D 1 5 ? -1.219 18.542 3.141 1.00 27.45 ? 23 DC D P 1 HETATM 441 O OP1 . DC D 1 5 ? -1.060 17.257 2.447 1.00 26.34 ? 23 DC D OP1 1 HETATM 442 O OP2 . DC D 1 5 ? -1.484 19.735 2.281 1.00 26.12 ? 23 DC D OP2 1 HETATM 443 O "O5'" . DC D 1 5 ? -2.358 18.404 4.298 1.00 26.93 ? 23 DC D "O5'" 1 HETATM 444 C "C5'" . DC D 1 5 ? -2.173 17.349 5.290 1.00 24.79 ? 23 DC D "C5'" 1 HETATM 445 C "C4'" . DC D 1 5 ? -3.153 17.670 6.448 1.00 21.76 ? 23 DC D "C4'" 1 HETATM 446 O "O4'" . DC D 1 5 ? -2.703 18.817 7.142 1.00 20.95 ? 23 DC D "O4'" 1 HETATM 447 C "C3'" . DC D 1 5 ? -4.611 17.808 5.985 1.00 21.32 ? 23 DC D "C3'" 1 HETATM 448 O "O3'" . DC D 1 5 ? -5.485 17.119 6.844 1.00 23.67 ? 23 DC D "O3'" 1 HETATM 449 C "C2'" . DC D 1 5 ? -4.796 19.322 6.018 1.00 19.32 ? 23 DC D "C2'" 1 HETATM 450 C "C1'" . DC D 1 5 ? -3.842 19.781 7.076 1.00 17.34 ? 23 DC D "C1'" 1 HETATM 451 N N1 . DC D 1 5 ? -3.498 21.204 7.010 1.00 13.17 ? 23 DC D N1 1 HETATM 452 C C2 . DC D 1 5 ? -3.127 21.755 8.200 1.00 12.09 ? 23 DC D C2 1 HETATM 453 O O2 . DC D 1 5 ? -2.941 21.066 9.192 1.00 13.22 ? 23 DC D O2 1 HETATM 454 N N3 . DC D 1 5 ? -2.888 23.086 8.233 1.00 10.39 ? 23 DC D N3 1 HETATM 455 C C4 . DC D 1 5 ? -3.021 23.866 7.142 1.00 11.19 ? 23 DC D C4 1 HETATM 456 N N4 . DC D 1 5 ? -2.888 25.197 7.241 1.00 12.78 ? 23 DC D N4 1 HETATM 457 C C5 . DC D 1 5 ? -3.392 23.315 5.886 1.00 10.85 ? 23 DC D C5 1 HETATM 458 C C6 . DC D 1 5 ? -3.630 21.984 5.886 1.00 13.07 ? 23 DC D C6 1 HETATM 459 P P . DG D 1 6 ? -5.989 15.605 6.712 1.00 23.87 ? 24 DG D P 1 HETATM 460 O OP1 . DG D 1 6 ? -4.796 14.733 6.448 1.00 23.75 ? 24 DG D OP1 1 HETATM 461 O OP2 . DG D 1 6 ? -7.022 15.559 5.621 1.00 23.13 ? 24 DG D OP2 1 HETATM 462 O "O5'" . DG D 1 6 ? -6.625 15.237 8.134 1.00 21.32 ? 24 DG D "O5'" 1 HETATM 463 C "C5'" . DG D 1 6 ? -6.333 16.018 9.324 1.00 16.56 ? 24 DG D "C5'" 1 HETATM 464 C "C4'" . DG D 1 6 ? -7.207 15.696 10.515 1.00 13.92 ? 24 DG D "C4'" 1 HETATM 465 O "O4'" . DG D 1 6 ? -7.843 16.890 11.044 1.00 13.14 ? 24 DG D "O4'" 1 HETATM 466 C "C3'" . DG D 1 6 ? -8.426 14.778 10.316 1.00 12.43 ? 24 DG D "C3'" 1 HETATM 467 O "O3'" . DG D 1 6 ? -8.850 14.228 11.573 1.00 13.64 ? 24 DG D "O3'" 1 HETATM 468 C "C2'" . DG D 1 6 ? -9.460 15.742 9.787 1.00 12.25 ? 24 DG D "C2'" 1 HETATM 469 C "C1'" . DG D 1 6 ? -9.195 17.027 10.548 1.00 8.12 ? 24 DG D "C1'" 1 HETATM 470 N N9 . DG D 1 6 ? -9.248 18.221 9.688 1.00 4.10 ? 24 DG D N9 1 HETATM 471 C C8 . DG D 1 6 ? -9.195 18.312 8.299 1.00 2.00 ? 24 DG D C8 1 HETATM 472 N N7 . DG D 1 6 ? -9.274 19.552 7.869 1.00 3.52 ? 24 DG D N7 1 HETATM 473 C C5 . DG D 1 6 ? -9.327 20.286 9.027 1.00 3.84 ? 24 DG D C5 1 HETATM 474 C C6 . DG D 1 6 ? -9.460 21.709 9.225 1.00 2.02 ? 24 DG D C6 1 HETATM 475 O O6 . DG D 1 6 ? -9.486 22.581 8.365 1.00 6.23 ? 24 DG D O6 1 HETATM 476 N N1 . DG D 1 6 ? -9.513 22.076 10.548 1.00 2.07 ? 24 DG D N1 1 HETATM 477 C C2 . DG D 1 6 ? -9.539 21.204 11.573 1.00 2.00 ? 24 DG D C2 1 HETATM 478 N N2 . DG D 1 6 ? -9.539 21.663 12.796 1.00 2.00 ? 24 DG D N2 1 HETATM 479 N N3 . DG D 1 6 ? -9.407 19.873 11.407 1.00 2.13 ? 24 DG D N3 1 HETATM 480 C C4 . DG D 1 6 ? -9.354 19.506 10.118 1.00 2.09 ? 24 DG D C4 1 HETATM 567 C C1 . DM5 H 2 . ? 10.811 25.059 15.541 1.00 3.12 ? 27 DM5 D C1 1 HETATM 568 C C2 . DM5 H 2 . ? 10.944 24.463 16.797 1.00 2.56 ? 27 DM5 D C2 1 HETATM 569 C C3 . DM5 H 2 . ? 10.917 23.040 16.962 1.00 2.44 ? 27 DM5 D C3 1 HETATM 570 C C4 . DM5 H 2 . ? 10.785 22.168 15.805 1.00 2.46 ? 27 DM5 D C4 1 HETATM 571 C C5 . DM5 H 2 . ? 10.626 22.902 14.549 1.00 2.72 ? 27 DM5 D C5 1 HETATM 572 C C6 . DM5 H 2 . ? 10.467 22.076 13.391 1.00 4.12 ? 27 DM5 D C6 1 HETATM 573 O O6 . DM5 H 2 . ? 10.467 20.791 13.424 1.00 6.92 ? 27 DM5 D O6 1 HETATM 574 C C7 . DM5 H 2 . ? 10.361 22.718 12.102 1.00 3.50 ? 27 DM5 D C7 1 HETATM 575 C C8 . DM5 H 2 . ? 10.175 21.938 10.978 1.00 3.69 ? 27 DM5 D C8 1 HETATM 576 O O8 . DM5 H 2 . ? 10.043 20.607 11.077 1.00 7.27 ? 27 DM5 D O8 1 HETATM 577 C C9 . DM5 H 2 . ? 10.202 22.535 9.688 1.00 5.64 ? 27 DM5 D C9 1 HETATM 578 C C10 . DM5 H 2 . ? 10.043 21.617 8.465 1.00 8.92 ? 27 DM5 D C10 1 HETATM 579 O O10 . DM5 H 2 . ? 8.771 20.974 8.729 1.00 12.61 ? 27 DM5 D O10 1 HETATM 580 C C11 . DM5 H 2 . ? 10.149 22.443 7.208 1.00 10.12 ? 27 DM5 D C11 1 HETATM 581 C C12 . DM5 H 2 . ? 9.539 23.866 7.208 1.00 8.83 ? 27 DM5 D C12 1 HETATM 582 O O12 . DM5 H 2 . ? 8.082 23.912 7.440 1.00 9.98 ? 27 DM5 D O12 1 HETATM 583 C C13 . DM5 H 2 . ? 9.645 24.600 5.853 1.00 9.38 ? 27 DM5 D C13 1 HETATM 584 O O13 . DM5 H 2 . ? 10.838 25.105 5.720 1.00 9.95 ? 27 DM5 D O13 1 HETATM 585 C C14 . DM5 H 2 . ? 9.062 24.049 4.530 1.00 10.01 ? 27 DM5 D C14 1 HETATM 586 C C15 . DM5 H 2 . ? 10.308 24.646 8.299 1.00 6.39 ? 27 DM5 D C15 1 HETATM 587 C C16 . DM5 H 2 . ? 10.308 23.912 9.556 1.00 4.98 ? 27 DM5 D C16 1 HETATM 588 C C17 . DM5 H 2 . ? 10.281 24.692 10.746 1.00 3.79 ? 27 DM5 D C17 1 HETATM 589 O O17 . DM5 H 2 . ? 10.573 26.023 10.581 1.00 5.62 ? 27 DM5 D O17 1 HETATM 590 C C18 . DM5 H 2 . ? 10.387 24.141 12.003 1.00 2.97 ? 27 DM5 D C18 1 HETATM 591 C C19 . DM5 H 2 . ? 10.573 24.921 13.193 1.00 4.44 ? 27 DM5 D C19 1 HETATM 592 O O19 . DM5 H 2 . ? 10.573 26.207 13.127 1.00 5.24 ? 27 DM5 D O19 1 HETATM 593 C C20 . DM5 H 2 . ? 10.652 24.233 14.416 1.00 3.11 ? 27 DM5 D C20 1 HETATM 594 C "C1'" . DM5 H 2 . ? 8.267 19.919 8.002 1.00 13.70 ? 27 DM5 D "C1'" 1 HETATM 595 C "C2'" . DM5 H 2 . ? 7.313 19.184 8.894 1.00 15.87 ? 27 DM5 D "C2'" 1 HETATM 596 C "C3'" . DM5 H 2 . ? 5.936 19.827 8.894 1.00 17.31 ? 27 DM5 D "C3'" 1 HETATM 597 N "N3'" . DM5 H 2 . ? 4.823 19.093 9.655 1.00 21.20 ? 27 DM5 D "N3'" 1 HETATM 598 C "C4'" . DM5 H 2 . ? 5.459 19.827 7.407 1.00 17.22 ? 27 DM5 D "C4'" 1 HETATM 599 O "O4'" . DM5 H 2 . ? 5.141 18.634 6.977 1.00 17.84 ? 27 DM5 D "O4'" 1 HETATM 600 C "C5'" . DM5 H 2 . ? 6.386 20.699 6.580 1.00 15.63 ? 27 DM5 D "C5'" 1 HETATM 601 O "O5'" . DM5 H 2 . ? 7.684 20.194 6.646 1.00 15.31 ? 27 DM5 D "O5'" 1 HETATM 602 C "C6'" . DM5 H 2 . ? 5.962 20.974 5.191 1.00 15.82 ? 27 DM5 D "C6'" 1 HETATM 603 C C1 . DM5 I 2 . ? -6.677 26.344 7.671 1.00 5.02 ? 28 DM5 D C1 1 HETATM 604 C C2 . DM5 I 2 . ? -6.757 26.298 6.315 1.00 4.99 ? 28 DM5 D C2 1 HETATM 605 C C3 . DM5 I 2 . ? -6.730 25.059 5.588 1.00 7.61 ? 28 DM5 D C3 1 HETATM 606 C C4 . DM5 I 2 . ? -6.598 23.820 6.315 1.00 5.46 ? 28 DM5 D C4 1 HETATM 607 C C5 . DM5 I 2 . ? -6.519 23.958 7.737 1.00 3.98 ? 28 DM5 D C5 1 HETATM 608 C C6 . DM5 I 2 . ? -6.360 22.764 8.498 1.00 3.01 ? 28 DM5 D C6 1 HETATM 609 O O6 . DM5 I 2 . ? -6.280 21.617 7.936 1.00 5.42 ? 28 DM5 D O6 1 HETATM 610 C C7 . DM5 I 2 . ? -6.254 22.856 9.919 1.00 3.45 ? 28 DM5 D C7 1 HETATM 611 C C8 . DM5 I 2 . ? -6.148 21.663 10.680 1.00 5.00 ? 28 DM5 D C8 1 HETATM 612 O O8 . DM5 I 2 . ? -6.148 20.470 10.052 1.00 9.09 ? 28 DM5 D O8 1 HETATM 613 C C9 . DM5 I 2 . ? -6.121 21.709 12.069 1.00 7.90 ? 28 DM5 D C9 1 HETATM 614 C C10 . DM5 I 2 . ? -6.254 20.378 12.829 1.00 11.39 ? 28 DM5 D C10 1 HETATM 615 O O10 . DM5 I 2 . ? -5.088 19.735 12.399 1.00 16.52 ? 28 DM5 D O10 1 HETATM 616 C C11 . DM5 I 2 . ? -6.280 20.515 14.284 1.00 12.49 ? 28 DM5 D C11 1 HETATM 617 C C12 . DM5 I 2 . ? -5.591 21.709 14.879 1.00 12.30 ? 28 DM5 D C12 1 HETATM 618 O O12 . DM5 I 2 . ? -4.134 21.663 14.813 1.00 15.32 ? 28 DM5 D O12 1 HETATM 619 C C13 . DM5 I 2 . ? -5.830 21.846 16.367 1.00 13.36 ? 28 DM5 D C13 1 HETATM 620 O O13 . DM5 I 2 . ? -7.048 22.305 16.632 1.00 16.30 ? 28 DM5 D O13 1 HETATM 621 C C14 . DM5 I 2 . ? -5.300 20.837 17.425 1.00 15.43 ? 28 DM5 D C14 1 HETATM 622 C C15 . DM5 I 2 . ? -6.201 23.040 14.185 1.00 8.91 ? 28 DM5 D C15 1 HETATM 623 C C16 . DM5 I 2 . ? -6.121 22.902 12.763 1.00 6.82 ? 28 DM5 D C16 1 HETATM 624 C C17 . DM5 I 2 . ? -6.227 24.095 11.970 1.00 3.84 ? 28 DM5 D C17 1 HETATM 625 O O17 . DM5 I 2 . ? -6.280 25.289 12.631 1.00 3.05 ? 28 DM5 D O17 1 HETATM 626 C C18 . DM5 I 2 . ? -6.307 24.141 10.614 1.00 3.26 ? 28 DM5 D C18 1 HETATM 627 C C19 . DM5 I 2 . ? -6.439 25.289 9.787 1.00 3.21 ? 28 DM5 D C19 1 HETATM 628 O O19 . DM5 I 2 . ? -6.492 26.482 10.316 1.00 5.59 ? 28 DM5 D O19 1 HETATM 629 C C20 . DM5 I 2 . ? -6.519 25.151 8.399 1.00 4.28 ? 28 DM5 D C20 1 HETATM 630 C "C1'" . DM5 I 2 . ? -4.876 18.358 12.300 1.00 18.08 ? 28 DM5 D "C1'" 1 HETATM 631 C "C2'" . DM5 I 2 . ? -3.922 18.083 11.110 1.00 19.08 ? 28 DM5 D "C2'" 1 HETATM 632 C "C3'" . DM5 I 2 . ? -2.491 18.634 11.474 1.00 21.38 ? 28 DM5 D "C3'" 1 HETATM 633 N "N3'" . DM5 I 2 . ? -1.431 18.450 10.449 1.00 21.21 ? 28 DM5 D "N3'" 1 HETATM 634 C "C4'" . DM5 I 2 . ? -2.120 17.899 12.763 1.00 21.46 ? 28 DM5 D "C4'" 1 HETATM 635 O "O4'" . DM5 I 2 . ? -1.749 16.614 12.532 1.00 23.34 ? 28 DM5 D "O4'" 1 HETATM 636 C "C5'" . DM5 I 2 . ? -3.021 18.175 13.920 1.00 20.94 ? 28 DM5 D "C5'" 1 HETATM 637 O "O5'" . DM5 I 2 . ? -4.346 17.716 13.557 1.00 20.72 ? 28 DM5 D "O5'" 1 HETATM 638 C "C6'" . DM5 I 2 . ? -2.729 17.578 15.243 1.00 21.58 ? 28 DM5 D "C6'" 1
spin
Assembly
Assembly ID: 198d_2
Assembly defined by
: Author
PDB ID
:
198d
Experimental method
: X-RAY DIFFRACTION
Resolution
: 1.97 Å
UniProt ID
: N/A
PubMed ID
:
7784175
Ligand 1
:
DM5
Ligand 2
:
DM5
Ligand 3
:
DNA
Download
mmCIF Format
PDB Format
Ligand ID
NUC pairing detail
Ligand Name
Synonyms
Formula
2D structure
DM5
N/A
Idarubicin
1: (1s,3s)-3-acetyl-3,5,12-trihydroxy-6,11-dioxo-1,2,3,4,6,11-hexahydronaphthacen-1-yl 3-amino-2,3,6-trideoxy-alpha-l-lyxo-hexopyranoside; 2: 4-demethoxydaunorubicin; 3: 5,12-naphthacenedione, 9-acetyl-7-((3-amino-2,3,6-trideoxy-alpha-l-lyxo-hexopyranosyl)oxy)-7,8,9,10-tetrahydro-6,9,11-trihydroxy-, (7s-cis)-; 4: (1s,3s)-3-acetyl-3,5,12-trihydroxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2,3,6-trideoxy-alpha-l-lyxo-hexopyranoside; 5: 4-demethoxydaunomycin; 6: 4-demethoxy-daunorubicin;
"C26 H27 N O9"
DM5
N/A
Idarubicin
1: (1s,3s)-3-acetyl-3,5,12-trihydroxy-6,11-dioxo-1,2,3,4,6,11-hexahydronaphthacen-1-yl 3-amino-2,3,6-trideoxy-alpha-l-lyxo-hexopyranoside; 2: 4-demethoxydaunorubicin; 3: 5,12-naphthacenedione, 9-acetyl-7-((3-amino-2,3,6-trideoxy-alpha-l-lyxo-hexopyranosyl)oxy)-7,8,9,10-tetrahydro-6,9,11-trihydroxy-, (7s-cis)-; 4: (1s,3s)-3-acetyl-3,5,12-trihydroxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2,3,6-trideoxy-alpha-l-lyxo-hexopyranoside; 5: 4-demethoxydaunomycin; 6: 4-demethoxy-daunorubicin;
"C26 H27 N O9"
DNA
D:DNA C:DNA
Deoxyribonucleic acid
N/A
"C11 H8 O4"
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)
