Q-BioLiP BL2908907

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data_131d_1
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
HETATM 1   O  "O5'" . DC  A 1 1 ? 18.405 10.091 33.312 1.00 11.01 ? 1  DC  A "O5'" 1
HETATM 2   C  "C5'" . DC  A 1 1 ? 18.983 11.172 32.478 1.00 8.80  ? 1  DC  A "C5'" 1
HETATM 3   C  "C4'" . DC  A 1 1 ? 18.085 12.426 32.548 1.00 8.04  ? 1  DC  A "C4'" 1
HETATM 4   O  "O4'" . DC  A 1 1 ? 16.811 12.052 32.052 1.00 7.47  ? 1  DC  A "O4'" 1
HETATM 5   C  "C3'" . DC  A 1 1 ? 17.843 13.020 33.947 1.00 8.26  ? 1  DC  A "C3'" 1
HETATM 6   O  "O3'" . DC  A 1 1 ? 17.870 14.462 33.922 1.00 8.14  ? 1  DC  A "O3'" 1
HETATM 7   C  "C2'" . DC  A 1 1 ? 16.330 12.695 34.264 1.00 7.99  ? 1  DC  A "C2'" 1
HETATM 8   C  "C1'" . DC  A 1 1 ? 15.756 12.659 32.776 1.00 6.80  ? 1  DC  A "C1'" 1
HETATM 9   N  N1    . DC  A 1 1 ? 14.615 11.768 32.683 1.00 6.05  ? 1  DC  A N1    1
HETATM 10  C  C2    . DC  A 1 1 ? 13.384 12.330 32.755 1.00 5.50  ? 1  DC  A C2    1
HETATM 11  O  O2    . DC  A 1 1 ? 13.237 13.572 32.813 1.00 6.42  ? 1  DC  A O2    1
HETATM 12  N  N3    . DC  A 1 1 ? 12.269 11.549 32.700 1.00 5.66  ? 1  DC  A N3    1
HETATM 13  C  C4    . DC  A 1 1 ? 12.390 10.144 32.612 1.00 5.49  ? 1  DC  A C4    1
HETATM 14  N  N4    . DC  A 1 1 ? 11.241 9.449  32.632 1.00 5.09  ? 1  DC  A N4    1
HETATM 15  C  C5    . DC  A 1 1 ? 13.690 9.581  32.568 1.00 5.29  ? 1  DC  A C5    1
HETATM 16  C  C6    . DC  A 1 1 ? 14.747 10.358 32.609 1.00 6.11  ? 1  DC  A C6    1
HETATM 17  P  P     . DG  A 1 2 ? 19.217 15.269 34.241 1.00 9.35  ? 2  DG  A P     1
HETATM 18  O  OP1   . DG  A 1 2 ? 19.881 14.650 35.395 1.00 10.85 ? 2  DG  A OP1   1
HETATM 19  O  OP2   . DG  A 1 2 ? 18.700 16.565 34.279 1.00 10.62 ? 2  DG  A OP2   1
HETATM 20  O  "O5'" . DG  A 1 2 ? 20.142 15.152 32.950 1.00 8.34  ? 2  DG  A "O5'" 1
HETATM 21  C  "C5'" . DG  A 1 2 ? 19.665 15.658 31.697 1.00 7.14  ? 2  DG  A "C5'" 1
HETATM 22  C  "C4'" . DG  A 1 2 ? 20.691 15.281 30.656 1.00 6.80  ? 2  DG  A "C4'" 1
HETATM 23  O  "O4'" . DG  A 1 2 ? 20.825 13.809 30.633 1.00 6.95  ? 2  DG  A "O4'" 1
HETATM 24  C  "C3'" . DG  A 1 2 ? 20.301 15.673 29.209 1.00 6.18  ? 2  DG  A "C3'" 1
HETATM 25  O  "O3'" . DG  A 1 2 ? 21.063 16.844 28.884 1.00 6.11  ? 2  DG  A "O3'" 1
HETATM 26  C  "C2'" . DG  A 1 2 ? 20.780 14.521 28.323 1.00 6.82  ? 2  DG  A "C2'" 1
HETATM 27  C  "C1'" . DG  A 1 2 ? 20.941 13.325 29.282 1.00 7.14  ? 2  DG  A "C1'" 1
HETATM 28  N  N9    . DG  A 1 2 ? 19.947 12.279 29.145 1.00 6.46  ? 2  DG  A N9    1
HETATM 29  C  C8    . DG  A 1 2 ? 20.211 10.923 29.106 1.00 7.32  ? 2  DG  A C8    1
HETATM 30  N  N7    . DG  A 1 2 ? 19.098 10.227 29.052 1.00 7.67  ? 2  DG  A N7    1
HETATM 31  C  C5    . DG  A 1 2 ? 18.096 11.131 29.120 1.00 6.51  ? 2  DG  A C5    1
HETATM 32  C  C6    . DG  A 1 2 ? 16.697 10.993 29.089 1.00 7.04  ? 2  DG  A C6    1
HETATM 33  O  O6    . DG  A 1 2 ? 16.048 9.902  29.111 1.00 7.31  ? 2  DG  A O6    1
HETATM 34  N  N1    . DG  A 1 2 ? 15.942 12.136 29.144 1.00 6.32  ? 2  DG  A N1    1
HETATM 35  C  C2    . DG  A 1 2 ? 16.583 13.350 29.258 1.00 6.38  ? 2  DG  A C2    1
HETATM 36  N  N2    . DG  A 1 2 ? 15.819 14.364 29.317 1.00 6.68  ? 2  DG  A N2    1
HETATM 37  N  N3    . DG  A 1 2 ? 17.868 13.586 29.255 1.00 6.43  ? 2  DG  A N3    1
HETATM 38  C  C4    . DG  A 1 2 ? 18.567 12.418 29.178 1.00 6.50  ? 2  DG  A C4    1
HETATM 39  P  P     . DC  A 1 3 ? 20.355 18.288 28.715 1.00 5.79  ? 3  DC  A P     1
HETATM 40  O  OP1   . DC  A 1 3 ? 21.459 19.177 28.490 1.00 6.55  ? 3  DC  A OP1   1
HETATM 41  O  OP2   . DC  A 1 3 ? 19.406 18.500 29.775 1.00 7.68  ? 3  DC  A OP2   1
HETATM 42  O  "O5'" . DC  A 1 3 ? 19.591 18.137 27.276 1.00 6.93  ? 3  DC  A "O5'" 1
HETATM 43  C  "C5'" . DC  A 1 3 ? 19.424 19.240 26.353 1.00 6.88  ? 3  DC  A "C5'" 1
HETATM 44  C  "C4'" . DC  A 1 3 ? 17.979 19.250 25.862 1.00 7.47  ? 3  DC  A "C4'" 1
HETATM 45  O  "O4'" . DC  A 1 3 ? 17.746 17.971 25.130 1.00 7.43  ? 3  DC  A "O4'" 1
HETATM 46  C  "C3'" . DC  A 1 3 ? 16.843 19.307 26.895 1.00 7.30  ? 3  DC  A "C3'" 1
HETATM 47  O  "O3'" . DC  A 1 3 ? 15.722 19.940 26.357 1.00 8.36  ? 3  DC  A "O3'" 1
HETATM 48  C  "C2'" . DC  A 1 3 ? 16.441 17.806 27.105 1.00 6.65  ? 3  DC  A "C2'" 1
HETATM 49  C  "C1'" . DC  A 1 3 ? 16.564 17.315 25.635 1.00 6.49  ? 3  DC  A "C1'" 1
HETATM 50  N  N1    . DC  A 1 3 ? 16.880 15.824 25.624 1.00 5.82  ? 3  DC  A N1    1
HETATM 51  C  C2    . DC  A 1 3 ? 15.788 14.999 25.715 1.00 5.58  ? 3  DC  A C2    1
HETATM 52  O  O2    . DC  A 1 3 ? 14.657 15.380 25.783 1.00 6.77  ? 3  DC  A O2    1
HETATM 53  N  N3    . DC  A 1 3 ? 16.110 13.680 25.758 1.00 5.80  ? 3  DC  A N3    1
HETATM 54  C  C4    . DC  A 1 3 ? 17.373 13.203 25.695 1.00 5.88  ? 3  DC  A C4    1
HETATM 55  N  N4    . DC  A 1 3 ? 17.574 11.812 25.777 1.00 7.01  ? 3  DC  A N4    1
HETATM 56  C  C5    . DC  A 1 3 ? 18.492 14.074 25.587 1.00 6.23  ? 3  DC  A C5    1
HETATM 57  C  C6    . DC  A 1 3 ? 18.188 15.389 25.551 1.00 6.32  ? 3  DC  A C6    1
HETATM 58  P  P     . DG  A 1 4 ? 15.566 21.568 26.451 1.00 9.60  ? 4  DG  A P     1
HETATM 59  O  OP1   . DG  A 1 4 ? 15.979 21.959 27.795 1.00 9.28  ? 4  DG  A OP1   1
HETATM 60  O  OP2   . DG  A 1 4 ? 14.227 21.725 26.019 1.00 11.71 ? 4  DG  A OP2   1
HETATM 61  O  "O5'" . DG  A 1 4 ? 16.483 22.213 25.331 1.00 9.31  ? 4  DG  A "O5'" 1
HETATM 62  C  "C5'" . DG  A 1 4 ? 16.143 22.028 23.939 1.00 8.13  ? 4  DG  A "C5'" 1
HETATM 63  C  "C4'" . DG  A 1 4 ? 17.355 22.517 23.136 1.00 7.55  ? 4  DG  A "C4'" 1
HETATM 64  O  "O4'" . DG  A 1 4 ? 18.557 21.787 23.448 1.00 8.28  ? 4  DG  A "O4'" 1
HETATM 65  C  "C3'" . DG  A 1 4 ? 17.227 22.365 21.621 1.00 8.37  ? 4  DG  A "C3'" 1
HETATM 66  O  "O3'" . DG  A 1 4 ? 16.575 23.607 21.144 1.00 10.64 ? 4  DG  A "O3'" 1
HETATM 67  C  "C2'" . DG  A 1 4 ? 18.540 22.144 21.090 1.00 7.71  ? 4  DG  A "C2'" 1
HETATM 68  C  "C1'" . DG  A 1 4 ? 19.376 21.612 22.312 1.00 6.88  ? 4  DG  A "C1'" 1
HETATM 69  N  N9    . DG  A 1 4 ? 19.769 20.221 22.237 1.00 6.47  ? 4  DG  A N9    1
HETATM 70  C  C8    . DG  A 1 4 ? 21.046 19.822 22.204 1.00 6.77  ? 4  DG  A C8    1
HETATM 71  N  N7    . DG  A 1 4 ? 21.171 18.483 22.135 1.00 6.73  ? 4  DG  A N7    1
HETATM 72  C  C5    . DG  A 1 4 ? 19.860 18.089 22.168 1.00 5.66  ? 4  DG  A C5    1
HETATM 73  C  C6    . DG  A 1 4 ? 19.308 16.759 22.108 1.00 5.96  ? 4  DG  A C6    1
HETATM 74  O  O6    . DG  A 1 4 ? 20.030 15.709 22.091 1.00 6.71  ? 4  DG  A O6    1
HETATM 75  N  N1    . DG  A 1 4 ? 18.000 16.684 22.135 1.00 5.30  ? 4  DG  A N1    1
HETATM 76  C  C2    . DG  A 1 4 ? 17.200 17.767 22.213 1.00 5.90  ? 4  DG  A C2    1
HETATM 77  N  N2    . DG  A 1 4 ? 15.963 17.580 22.242 1.00 5.88  ? 4  DG  A N2    1
HETATM 78  N  N3    . DG  A 1 4 ? 17.641 19.043 22.218 1.00 5.84  ? 4  DG  A N3    1
HETATM 79  C  C4    . DG  A 1 4 ? 18.960 19.090 22.212 1.00 5.93  ? 4  DG  A C4    1
HETATM 80  P  P     . DC  A 1 5 ? 15.287 23.653 20.334 1.00 11.44 ? 5  DC  A P     1
HETATM 81  O  OP1   . DC  A 1 5 ? 15.292 24.912 19.540 1.00 14.17 ? 5  DC  A OP1   1
HETATM 82  O  OP2   . DC  A 1 5 ? 14.162 23.454 21.119 1.00 15.14 ? 5  DC  A OP2   1
HETATM 83  O  "O5'" . DC  A 1 5 ? 15.220 22.328 19.379 1.00 8.34  ? 5  DC  A "O5'" 1
HETATM 84  C  "C5'" . DC  A 1 5 ? 14.408 22.331 18.200 1.00 7.41  ? 5  DC  A "C5'" 1
HETATM 85  C  "C4'" . DC  A 1 5 ? 13.920 20.854 17.989 1.00 6.87  ? 5  DC  A "C4'" 1
HETATM 86  O  "O4'" . DC  A 1 5 ? 15.154 20.118 17.644 1.00 6.90  ? 5  DC  A "O4'" 1
HETATM 87  C  "C3'" . DC  A 1 5 ? 13.344 20.203 19.269 1.00 7.30  ? 5  DC  A "C3'" 1
HETATM 88  O  "O3'" . DC  A 1 5 ? 12.161 19.535 18.962 1.00 8.48  ? 5  DC  A "O3'" 1
HETATM 89  C  "C2'" . DC  A 1 5 ? 14.402 19.161 19.690 1.00 7.05  ? 5  DC  A "C2'" 1
HETATM 90  C  "C1'" . DC  A 1 5 ? 15.055 18.844 18.352 1.00 6.58  ? 5  DC  A "C1'" 1
HETATM 91  N  N1    . DC  A 1 5 ? 16.493 18.432 18.450 1.00 6.36  ? 5  DC  A N1    1
HETATM 92  C  C2    . DC  A 1 5 ? 16.663 17.014 18.572 1.00 6.78  ? 5  DC  A C2    1
HETATM 93  O  O2    . DC  A 1 5 ? 15.694 16.263 18.580 1.00 7.54  ? 5  DC  A O2    1
HETATM 94  N  N3    . DC  A 1 5 ? 17.941 16.606 18.668 1.00 7.23  ? 5  DC  A N3    1
HETATM 95  C  C4    . DC  A 1 5 ? 19.046 17.411 18.687 1.00 7.57  ? 5  DC  A C4    1
HETATM 96  N  N4    . DC  A 1 5 ? 20.299 16.883 18.790 1.00 7.88  ? 5  DC  A N4    1
HETATM 97  C  C5    . DC  A 1 5 ? 18.832 18.837 18.583 1.00 7.26  ? 5  DC  A C5    1
HETATM 98  C  C6    . DC  A 1 5 ? 17.575 19.240 18.489 1.00 6.44  ? 5  DC  A C6    1
HETATM 99  P  P     . DG  A 1 6 ? 10.827 20.279 19.197 1.00 10.09 ? 6  DG  A P     1
HETATM 100 O  OP1   . DG  A 1 6 ? 10.880 20.830 20.583 1.00 11.89 ? 6  DG  A OP1   1
HETATM 101 O  OP2   . DG  A 1 6 ? 9.775  19.497 18.787 1.00 11.32 ? 6  DG  A OP2   1
HETATM 102 O  "O5'" . DG  A 1 6 ? 10.823 21.548 18.172 1.00 9.74  ? 6  DG  A "O5'" 1
HETATM 103 C  "C5'" . DG  A 1 6 ? 10.440 21.329 16.816 1.00 8.48  ? 6  DG  A "C5'" 1
HETATM 104 C  "C4'" . DG  A 1 6 ? 10.613 22.766 16.170 1.00 6.84  ? 6  DG  A "C4'" 1
HETATM 105 O  "O4'" . DG  A 1 6 ? 11.945 23.161 16.111 1.00 7.13  ? 6  DG  A "O4'" 1
HETATM 106 C  "C3'" . DG  A 1 6 ? 10.183 22.658 14.654 1.00 7.93  ? 6  DG  A "C3'" 1
HETATM 107 O  "O3'" . DG  A 1 6 ? 9.564  23.908 14.304 1.00 7.92  ? 6  DG  A "O3'" 1
HETATM 108 C  "C2'" . DG  A 1 6 ? 11.478 22.430 13.955 1.00 7.55  ? 6  DG  A "C2'" 1
HETATM 109 C  "C1'" . DG  A 1 6 ? 12.448 23.318 14.738 1.00 6.42  ? 6  DG  A "C1'" 1
HETATM 110 N  N9    . DG  A 1 6 ? 13.814 22.952 14.696 1.00 5.52  ? 6  DG  A N9    1
HETATM 111 C  C8    . DG  A 1 6 ? 14.827 23.762 14.606 1.00 6.16  ? 6  DG  A C8    1
HETATM 112 N  N7    . DG  A 1 6 ? 16.056 23.240 14.625 1.00 6.96  ? 6  DG  A N7    1
HETATM 113 C  C5    . DG  A 1 6 ? 15.692 21.876 14.678 1.00 6.48  ? 6  DG  A C5    1
HETATM 114 C  C6    . DG  A 1 6 ? 16.570 20.742 14.743 1.00 6.20  ? 6  DG  A C6    1
HETATM 115 O  O6    . DG  A 1 6 ? 17.807 20.779 14.747 1.00 7.46  ? 6  DG  A O6    1
HETATM 116 N  N1    . DG  A 1 6 ? 15.946 19.550 14.818 1.00 5.42  ? 6  DG  A N1    1
HETATM 117 C  C2    . DG  A 1 6 ? 14.598 19.469 14.871 1.00 5.86  ? 6  DG  A C2    1
HETATM 118 N  N2    . DG  A 1 6 ? 14.070 18.295 14.974 1.00 6.04  ? 6  DG  A N2    1
HETATM 119 N  N3    . DG  A 1 6 ? 13.698 20.490 14.833 1.00 5.87  ? 6  DG  A N3    1
HETATM 120 C  C4    . DG  A 1 6 ? 14.363 21.651 14.742 1.00 5.82  ? 6  DG  A C4    1
HETATM 121 O  "O5'" . DC  B 1 1 ? 18.917 9.540  14.535 1.00 13.99 ? 7  DC  B "O5'" 1
HETATM 122 C  "C5'" . DC  B 1 1 ? 19.079 10.968 14.977 1.00 10.41 ? 7  DC  B "C5'" 1
HETATM 123 C  "C4'" . DC  B 1 1 ? 17.651 11.357 15.473 1.00 8.28  ? 7  DC  B "C4'" 1
HETATM 124 O  "O4'" . DC  B 1 1 ? 17.843 12.697 16.073 1.00 7.52  ? 7  DC  B "O4'" 1
HETATM 125 C  "C3'" . DC  B 1 1 ? 16.584 11.539 14.420 1.00 7.44  ? 7  DC  B "C3'" 1
HETATM 126 O  "O3'" . DC  B 1 1 ? 15.311 11.396 14.852 1.00 7.73  ? 7  DC  B "O3'" 1
HETATM 127 C  "C2'" . DC  B 1 1 ? 16.796 13.047 14.005 1.00 6.93  ? 7  DC  B "C2'" 1
HETATM 128 C  "C1'" . DC  B 1 1 ? 16.977 13.627 15.458 1.00 6.48  ? 7  DC  B "C1'" 1
HETATM 129 N  N1    . DC  B 1 1 ? 17.734 14.905 15.404 1.00 6.08  ? 7  DC  B N1    1
HETATM 130 C  C2    . DC  B 1 1 ? 16.936 16.018 15.211 1.00 5.97  ? 7  DC  B C2    1
HETATM 131 O  O2    . DC  B 1 1 ? 15.736 15.960 15.168 1.00 6.51  ? 7  DC  B O2    1
HETATM 132 N  N3    . DC  B 1 1 ? 17.619 17.222 15.141 1.00 6.26  ? 7  DC  B N3    1
HETATM 133 C  C4    . DC  B 1 1 ? 18.946 17.321 15.234 1.00 6.45  ? 7  DC  B C4    1
HETATM 134 N  N4    . DC  B 1 1 ? 19.550 18.531 15.139 1.00 7.12  ? 7  DC  B N4    1
HETATM 135 C  C5    . DC  B 1 1 ? 19.772 16.110 15.355 1.00 6.52  ? 7  DC  B C5    1
HETATM 136 C  C6    . DC  B 1 1 ? 19.098 14.966 15.438 1.00 6.07  ? 7  DC  B C6    1
HETATM 137 P  P     . DG  B 1 2 ? 14.487 10.011 14.835 1.00 8.81  ? 8  DG  B P     1
HETATM 138 O  OP1   . DG  B 1 2 ? 14.746 9.401  13.579 1.00 9.48  ? 8  DG  B OP1   1
HETATM 139 O  OP2   . DG  B 1 2 ? 13.108 10.379 15.229 1.00 9.85  ? 8  DG  B OP2   1
HETATM 140 O  "O5'" . DG  B 1 2 ? 15.215 9.055  15.890 1.00 8.09  ? 8  DG  B "O5'" 1
HETATM 141 C  "C5'" . DG  B 1 2 ? 15.035 9.359  17.215 1.00 7.75  ? 8  DG  B "C5'" 1
HETATM 142 C  "C4'" . DG  B 1 2 ? 15.978 8.404  18.021 1.00 7.57  ? 8  DG  B "C4'" 1
HETATM 143 O  "O4'" . DG  B 1 2 ? 17.324 8.702  17.751 1.00 6.89  ? 8  DG  B "O4'" 1
HETATM 144 C  "C3'" . DG  B 1 2 ? 15.872 8.610  19.602 1.00 8.21  ? 8  DG  B "C3'" 1
HETATM 145 O  "O3'" . DG  B 1 2 ? 14.937 7.686  20.025 1.00 11.15 ? 8  DG  B "O3'" 1
HETATM 146 C  "C2'" . DG  B 1 2 ? 17.226 8.422  20.114 1.00 7.67  ? 8  DG  B "C2'" 1
HETATM 147 C  "C1'" . DG  B 1 2 ? 18.109 8.649  18.980 1.00 7.07  ? 8  DG  B "C1'" 1
HETATM 148 N  N9    . DG  B 1 2 ? 18.922 9.835  18.950 1.00 7.25  ? 8  DG  B N9    1
HETATM 149 C  C8    . DG  B 1 2 ? 20.230 9.874  18.852 1.00 7.38  ? 8  DG  B C8    1
HETATM 150 N  N7    . DG  B 1 2 ? 20.779 11.085 18.764 1.00 7.88  ? 8  DG  B N7    1
HETATM 151 C  C5    . DG  B 1 2 ? 19.639 11.868 18.878 1.00 7.53  ? 8  DG  B C5    1
HETATM 152 C  C6    . DG  B 1 2 ? 19.501 13.317 18.868 1.00 6.95  ? 8  DG  B C6    1
HETATM 153 O  O6    . DG  B 1 2 ? 20.508 14.047 18.735 1.00 8.18  ? 8  DG  B O6    1
HETATM 154 N  N1    . DG  B 1 2 ? 18.258 13.761 18.907 1.00 7.05  ? 8  DG  B N1    1
HETATM 155 C  C2    . DG  B 1 2 ? 17.201 12.995 18.994 1.00 6.73  ? 8  DG  B C2    1
HETATM 156 N  N2    . DG  B 1 2 ? 16.039 13.459 18.996 1.00 7.31  ? 8  DG  B N2    1
HETATM 157 N  N3    . DG  B 1 2 ? 17.208 11.599 19.049 1.00 7.45  ? 8  DG  B N3    1
HETATM 158 C  C4    . DG  B 1 2 ? 18.470 11.173 18.938 1.00 6.70  ? 8  DG  B C4    1
HETATM 159 P  P     . DC  B 1 3 ? 14.034 7.751  21.261 1.00 17.28 ? 9  DC  B P     1
HETATM 160 O  OP1   . DC  B 1 3 ? 15.009 7.922  22.320 1.00 17.49 ? 9  DC  B OP1   1
HETATM 161 O  OP2   . DC  B 1 3 ? 13.119 6.567  21.374 1.00 16.34 ? 9  DC  B OP2   1
HETATM 162 O  "O5'" . DC  B 1 3 ? 13.220 9.117  21.376 1.00 11.78 ? 9  DC  B "O5'" 1
HETATM 163 C  "C5'" . DC  B 1 3 ? 12.200 9.257  22.349 1.00 9.32  ? 9  DC  B "C5'" 1
HETATM 164 C  "C4'" . DC  B 1 3 ? 11.949 10.836 22.482 1.00 7.72  ? 9  DC  B "C4'" 1
HETATM 165 O  "O4'" . DC  B 1 3 ? 13.100 11.397 23.076 1.00 7.25  ? 9  DC  B "O4'" 1
HETATM 166 C  "C3'" . DC  B 1 3 ? 11.777 11.512 21.091 1.00 7.48  ? 9  DC  B "C3'" 1
HETATM 167 O  "O3'" . DC  B 1 3 ? 10.822 12.549 21.173 1.00 8.28  ? 9  DC  B "O3'" 1
HETATM 168 C  "C2'" . DC  B 1 3 ? 13.121 12.155 20.823 1.00 6.76  ? 9  DC  B "C2'" 1
HETATM 169 C  "C1'" . DC  B 1 3 ? 13.532 12.552 22.337 1.00 7.09  ? 9  DC  B "C1'" 1
HETATM 170 N  N1    . DC  B 1 3 ? 15.038 12.634 22.398 1.00 6.53  ? 9  DC  B N1    1
HETATM 171 C  C2    . DC  B 1 3 ? 15.590 13.899 22.282 1.00 5.84  ? 9  DC  B C2    1
HETATM 172 O  O2    . DC  B 1 3 ? 14.867 14.878 22.207 1.00 7.67  ? 9  DC  B O2    1
HETATM 173 N  N3    . DC  B 1 3 ? 16.930 13.975 22.291 1.00 5.64  ? 9  DC  B N3    1
HETATM 174 C  C4    . DC  B 1 3 ? 17.776 12.892 22.350 1.00 5.98  ? 9  DC  B C4    1
HETATM 175 N  N4    . DC  B 1 3 ? 19.084 13.067 22.312 1.00 6.48  ? 9  DC  B N4    1
HETATM 176 C  C5    . DC  B 1 3 ? 17.173 11.578 22.483 1.00 6.37  ? 9  DC  B C5    1
HETATM 177 C  C6    . DC  B 1 3 ? 15.837 11.513 22.494 1.00 6.22  ? 9  DC  B C6    1
HETATM 178 P  P     . DG  B 1 4 ? 9.284  12.216 20.882 1.00 8.80  ? 10 DG  B P     1
HETATM 179 O  OP1   . DG  B 1 4 ? 9.225  11.434 19.723 1.00 9.68  ? 10 DG  B OP1   1
HETATM 180 O  OP2   . DG  B 1 4 ? 8.659  13.546 20.938 1.00 10.29 ? 10 DG  B OP2   1
HETATM 181 O  "O5'" . DG  B 1 4 ? 8.799  11.261 22.092 1.00 8.18  ? 10 DG  B "O5'" 1
HETATM 182 C  "C5'" . DG  B 1 4 ? 8.724  11.881 23.367 1.00 6.38  ? 10 DG  B "C5'" 1
HETATM 183 C  "C4'" . DG  B 1 4 ? 8.172  10.814 24.352 1.00 6.66  ? 10 DG  B "C4'" 1
HETATM 184 O  "O4'" . DG  B 1 4 ? 9.149  9.716  24.407 1.00 6.19  ? 10 DG  B "O4'" 1
HETATM 185 C  "C3'" . DG  B 1 4 ? 8.108  11.396 25.787 1.00 6.34  ? 10 DG  B "C3'" 1
HETATM 186 O  "O3'" . DG  B 1 4 ? 6.763  11.748 26.009 1.00 7.31  ? 10 DG  B "O3'" 1
HETATM 187 C  "C2'" . DG  B 1 4 ? 8.523  10.276 26.694 1.00 6.41  ? 10 DG  B "C2'" 1
HETATM 188 C  "C1'" . DG  B 1 4 ? 9.340  9.361  25.830 1.00 5.50  ? 10 DG  B "C1'" 1
HETATM 189 N  N9    . DG  B 1 4 ? 10.729 9.332  25.994 1.00 5.46  ? 10 DG  B N9    1
HETATM 190 C  C8    . DG  B 1 4 ? 11.482 8.201  26.114 1.00 5.30  ? 10 DG  B C8    1
HETATM 191 N  N7    . DG  B 1 4 ? 12.769 8.367  26.165 1.00 5.22  ? 10 DG  B N7    1
HETATM 192 C  C5    . DG  B 1 4 ? 12.865 9.761  26.059 1.00 5.14  ? 10 DG  B C5    1
HETATM 193 C  C6    . DG  B 1 4 ? 14.007 10.595 26.009 1.00 5.24  ? 10 DG  B C6    1
HETATM 194 O  O6    . DG  B 1 4 ? 15.203 10.222 26.060 1.00 7.08  ? 10 DG  B O6    1
HETATM 195 N  N1    . DG  B 1 4 ? 13.735 11.921 25.927 1.00 4.92  ? 10 DG  B N1    1
HETATM 196 C  C2    . DG  B 1 4 ? 12.503 12.400 25.802 1.00 4.69  ? 10 DG  B C2    1
HETATM 197 N  N2    . DG  B 1 4 ? 12.315 13.700 25.655 1.00 5.12  ? 10 DG  B N2    1
HETATM 198 N  N3    . DG  B 1 4 ? 11.364 11.707 25.821 1.00 4.58  ? 10 DG  B N3    1
HETATM 199 C  C4    . DG  B 1 4 ? 11.660 10.369 25.940 1.00 5.16  ? 10 DG  B C4    1
HETATM 200 P  P     . DC  B 1 5 ? 6.351  13.198 26.575 1.00 7.38  ? 11 DC  B P     1
HETATM 201 O  OP1   . DC  B 1 5 ? 4.954  13.142 26.809 1.00 9.24  ? 11 DC  B OP1   1
HETATM 202 O  OP2   . DC  B 1 5 ? 6.878  14.173 25.630 1.00 8.76  ? 11 DC  B OP2   1
HETATM 203 O  "O5'" . DC  B 1 5 ? 7.152  13.232 27.965 1.00 8.56  ? 11 DC  B "O5'" 1
HETATM 204 C  "C5'" . DC  B 1 5 ? 6.789  14.029 29.075 1.00 6.68  ? 11 DC  B "C5'" 1
HETATM 205 C  "C4'" . DC  B 1 5 ? 8.009  14.771 29.604 1.00 6.90  ? 11 DC  B "C4'" 1
HETATM 206 O  "O4'" . DC  B 1 5 ? 8.979  13.833 30.087 1.00 6.52  ? 11 DC  B "O4'" 1
HETATM 207 C  "C3'" . DC  B 1 5 ? 8.794  15.588 28.543 1.00 7.10  ? 11 DC  B "C3'" 1
HETATM 208 O  "O3'" . DC  B 1 5 ? 9.236  16.827 29.169 1.00 7.84  ? 11 DC  B "O3'" 1
HETATM 209 C  "C2'" . DC  B 1 5 ? 10.025 14.777 28.202 1.00 6.74  ? 11 DC  B "C2'" 1
HETATM 210 C  "C1'" . DC  B 1 5 ? 10.248 14.148 29.589 1.00 6.53  ? 11 DC  B "C1'" 1
HETATM 211 N  N1    . DC  B 1 5 ? 11.020 12.872 29.514 1.00 6.11  ? 11 DC  B N1    1
HETATM 212 C  C2    . DC  B 1 5 ? 12.346 12.980 29.416 1.00 5.58  ? 11 DC  B C2    1
HETATM 213 O  O2    . DC  B 1 5 ? 12.939 14.052 29.382 1.00 6.43  ? 11 DC  B O2    1
HETATM 214 N  N3    . DC  B 1 5 ? 13.080 11.823 29.351 1.00 5.54  ? 11 DC  B N3    1
HETATM 215 C  C4    . DC  B 1 5 ? 12.472 10.592 29.376 1.00 6.32  ? 11 DC  B C4    1
HETATM 216 N  N4    . DC  B 1 5 ? 13.297 9.511  29.306 1.00 6.17  ? 11 DC  B N4    1
HETATM 217 C  C5    . DC  B 1 5 ? 11.072 10.497 29.462 1.00 6.07  ? 11 DC  B C5    1
HETATM 218 C  C6    . DC  B 1 5 ? 10.367 11.632 29.514 1.00 6.57  ? 11 DC  B C6    1
HETATM 219 P  P     . DG  B 1 6 ? 8.387  18.164 29.064 1.00 8.49  ? 12 DG  B P     1
HETATM 220 O  OP1   . DG  B 1 6 ? 7.994  18.343 27.713 1.00 8.70  ? 12 DG  B OP1   1
HETATM 221 O  OP2   . DG  B 1 6 ? 9.233  19.236 29.722 1.00 10.32 ? 12 DG  B OP2   1
HETATM 222 O  "O5'" . DG  B 1 6 ? 6.998  17.967 29.834 1.00 8.67  ? 12 DG  B "O5'" 1
HETATM 223 C  "C5'" . DG  B 1 6 ? 7.071  18.113 31.280 1.00 8.33  ? 12 DG  B "C5'" 1
HETATM 224 C  "C4'" . DG  B 1 6 ? 5.722  17.682 31.810 1.00 7.84  ? 12 DG  B "C4'" 1
HETATM 225 O  "O4'" . DG  B 1 6 ? 5.572  16.234 31.647 1.00 6.68  ? 12 DG  B "O4'" 1
HETATM 226 C  "C3'" . DG  B 1 6 ? 5.506  17.937 33.348 1.00 8.62  ? 12 DG  B "C3'" 1
HETATM 227 O  "O3'" . DG  B 1 6 ? 4.108  18.112 33.536 1.00 10.57 ? 12 DG  B "O3'" 1
HETATM 228 C  "C2'" . DG  B 1 6 ? 5.974  16.632 33.987 1.00 7.50  ? 12 DG  B "C2'" 1
HETATM 229 C  "C1'" . DG  B 1 6 ? 5.355  15.637 32.978 1.00 6.52  ? 12 DG  B "C1'" 1
HETATM 230 N  N9    . DG  B 1 6 ? 5.989  14.335 32.943 1.00 6.30  ? 12 DG  B N9    1
HETATM 231 C  C8    . DG  B 1 6 ? 5.270  13.188 32.831 1.00 6.50  ? 12 DG  B C8    1
HETATM 232 N  N7    . DG  B 1 6 ? 6.058  12.109 32.748 1.00 6.77  ? 12 DG  B N7    1
HETATM 233 C  C5    . DG  B 1 6 ? 7.324  12.624 32.813 1.00 5.92  ? 12 DG  B C5    1
HETATM 234 C  C6    . DG  B 1 6 ? 8.597  12.005 32.798 1.00 5.97  ? 12 DG  B C6    1
HETATM 235 O  O6    . DG  B 1 6 ? 8.762  10.738 32.648 1.00 7.46  ? 12 DG  B O6    1
HETATM 236 N  N1    . DG  B 1 6 ? 9.682  12.782 32.909 1.00 5.82  ? 12 DG  B N1    1
HETATM 237 C  C2    . DG  B 1 6 ? 9.514  14.155 33.002 1.00 5.37  ? 12 DG  B C2    1
HETATM 238 N  N2    . DG  B 1 6 ? 10.593 14.805 33.023 1.00 5.96  ? 12 DG  B N2    1
HETATM 239 N  N3    . DG  B 1 6 ? 8.368  14.797 33.043 1.00 5.33  ? 12 DG  B N3    1
HETATM 240 C  C4    . DG  B 1 6 ? 7.313  13.996 32.959 1.00 5.71  ? 12 DG  B C4    1
HETATM 241 N  N1    . SPM C 2 . ? 23.536 18.439 26.873 1.00 7.20  ? 13 SPM A N1    1
HETATM 242 C  C2    . SPM C 2 . ? 23.455 17.020 26.268 1.00 7.06  ? 13 SPM A C2    1
HETATM 243 C  C3    . SPM C 2 . ? 22.240 17.003 25.351 1.00 7.51  ? 13 SPM A C3    1
HETATM 244 C  C4    . SPM C 2 . ? 21.893 15.530 24.867 1.00 8.62  ? 13 SPM A C4    1
HETATM 245 N  N5    . SPM C 2 . ? 23.049 15.019 23.967 1.00 8.89  ? 13 SPM A N5    1
HETATM 246 C  C6    . SPM C 2 . ? 22.416 13.743 23.242 1.00 9.65  ? 13 SPM A C6    1
HETATM 247 C  C7    . SPM C 2 . ? 23.495 13.119 22.383 1.00 11.09 ? 13 SPM A C7    1
HETATM 248 C  C8    . SPM C 2 . ? 22.920 12.276 21.221 1.00 10.02 ? 13 SPM A C8    1
HETATM 249 C  C9    . SPM C 2 . ? 24.082 11.795 20.369 1.00 11.33 ? 13 SPM A C9    1
HETATM 250 N  N10   . SPM C 2 . ? 23.509 10.751 19.354 1.00 10.86 ? 13 SPM A N10   1
HETATM 251 C  C11   . SPM C 2 . ? 24.709 10.317 18.441 1.00 12.77 ? 13 SPM A C11   1
HETATM 252 C  C12   . SPM C 2 . ? 24.031 9.361  17.322 1.00 12.36 ? 13 SPM A C12   1
HETATM 253 C  C13   . SPM C 2 . ? 25.221 8.811  16.488 1.00 12.94 ? 13 SPM A C13   1
HETATM 254 N  N14   . SPM C 2 . ? 24.826 7.810  15.432 1.00 11.66 ? 13 SPM A N14   1
HETATM 255 NA NA    . NA  D 3 . ? 15.975 27.270 18.517 1.00 22.75 ? 15 NA  A NA    1
HETATM 256 NA NA    . NA  E 3 . ? 15.169 25.733 22.406 1.00 28.34 ? 16 NA  A NA    1
HETATM 257 N  N1    . SPM F 2 . ? 11.118 11.787 12.251 1.00 35.24 ? 14 SPM B N1    1
HETATM 258 C  C2    . SPM F 2 . ? 10.870 13.187 11.692 1.00 34.69 ? 14 SPM B C2    1
HETATM 259 C  C3    . SPM F 2 . ? 11.528 14.292 12.365 1.00 34.70 ? 14 SPM B C3    1
HETATM 260 C  C4    . SPM F 2 . ? 13.063 14.339 12.344 1.00 34.40 ? 14 SPM B C4    1
HETATM 261 N  N5    . SPM F 2 . ? 13.560 14.929 13.695 1.00 34.49 ? 14 SPM B N5    1
HETATM 262 C  C6    . SPM F 2 . ? 12.736 14.535 14.925 1.00 34.35 ? 14 SPM B C6    1
HETATM 263 C  C7    . SPM F 2 . ? 13.358 14.945 16.261 1.00 34.17 ? 14 SPM B C7    1
HETATM 264 C  C8    . SPM F 2 . ? 12.229 15.123 17.343 1.00 34.29 ? 14 SPM B C8    1
HETATM 265 C  C9    . SPM F 2 . ? 12.714 16.048 18.428 1.00 34.31 ? 14 SPM B C9    1
HETATM 266 N  N10   . SPM F 2 . ? 13.122 15.589 19.780 1.00 34.07 ? 14 SPM B N10   1
HETATM 267 C  C11   . SPM F 2 . ? 12.309 16.282 20.910 1.00 34.02 ? 14 SPM B C11   1
HETATM 268 C  C12   . SPM F 2 . ? 10.807 15.947 20.796 1.00 34.33 ? 14 SPM B C12   1
HETATM 269 C  C13   . SPM F 2 . ? 10.213 15.929 22.207 1.00 34.48 ? 14 SPM B C13   1
HETATM 270 N  N14   . SPM F 2 . ? 8.644  15.828 22.267 1.00 35.09 ? 14 SPM B N14   1

spin

Assembly

Assembly ID: 131d_1

Assembly defined by: Author

PDB ID: 131d

Experimental method: X-RAY DIFFRACTION

Resolution: 1.0 Å

UniProt ID: N/A

PubMed ID: 8110738

Ligand 1 : SPM

Ligand 2 : SPM

Ligand 3 : NA

Ligand 4 : NA

Ligand 5 : DNA

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mmCIF Format

PDB Format

Ligand ID	NUC pairing detail	Ligand Name	Synonyms	Formula	2D structure
SPM	N/A	Spermine	1: N,n'-bis(3-aminopropyl)butane-1,4-diamine; 2: 4,9-diaza-1,12-dodecanediamine; 3: 4,9-diazadodecane-1,12-diamine; 4: N,n'-bis(3-aminopropyl)-1,4-butanediamine;	"C10 H26 N4"
SPM	N/A	Spermine	1: N,n'-bis(3-aminopropyl)butane-1,4-diamine; 2: 4,9-diaza-1,12-dodecanediamine; 3: 4,9-diazadodecane-1,12-diamine; 4: N,n'-bis(3-aminopropyl)-1,4-butanediamine;	"C10 H26 N4"
NA	N/A	Sodium(1+)	1: Sodium cation; 2: Na(+); 3: Sodium ion; 4: Na+; 5: Sodium(1+) ion; 6: Sodium(i) cation;	Na
NA	N/A	Sodium(1+)	1: Sodium cation; 2: Na(+); 3: Sodium ion; 4: Na+; 5: Sodium(1+) ion; 6: Sodium(i) cation;	Na
DNA	A:DNA B:DNA	Deoxyribonucleic acid	N/A	"C11 H8 O4"	N/A

Reference

Wei et al, Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions, Genomics, Proteomics & Bioinformatics, 22(1), qzae001, 2024. (PDF)

Function Annotation for BL2908907

Assembly

Assembly ID: 131d_1

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