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Yang Lab
Function Annotation for BL2908886
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data_110d_1 # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num HETATM 1 O "O5'" . DC A 1 1 ? -19.029 20.418 23.202 1.00 33.16 ? 1 DC A "O5'" 1 HETATM 2 C "C5'" . DC A 1 1 ? -18.133 21.255 23.991 1.00 45.58 ? 1 DC A "C5'" 1 HETATM 3 C "C4'" . DC A 1 1 ? -16.884 20.415 24.146 1.00 31.91 ? 1 DC A "C4'" 1 HETATM 4 O "O4'" . DC A 1 1 ? -17.008 19.183 24.781 1.00 34.69 ? 1 DC A "O4'" 1 HETATM 5 C "C3'" . DC A 1 1 ? -16.118 20.132 22.850 1.00 51.36 ? 1 DC A "C3'" 1 HETATM 6 O "O3'" . DC A 1 1 ? -15.253 21.145 22.594 1.00 63.33 ? 1 DC A "O3'" 1 HETATM 7 C "C2'" . DC A 1 1 ? -15.596 18.714 22.978 1.00 44.64 ? 1 DC A "C2'" 1 HETATM 8 C "C1'" . DC A 1 1 ? -15.947 18.260 24.376 1.00 21.42 ? 1 DC A "C1'" 1 HETATM 9 N N1 . DC A 1 1 ? -16.429 16.895 24.472 1.00 16.02 ? 1 DC A N1 1 HETATM 10 C C2 . DC A 1 1 ? -15.517 15.882 24.701 1.00 12.97 ? 1 DC A C2 1 HETATM 11 O O2 . DC A 1 1 ? -14.318 16.042 24.813 1.00 14.18 ? 1 DC A O2 1 HETATM 12 N N3 . DC A 1 1 ? -15.958 14.602 24.776 1.00 6.27 ? 1 DC A N3 1 HETATM 13 C C4 . DC A 1 1 ? -17.308 14.327 24.728 1.00 5.01 ? 1 DC A C4 1 HETATM 14 N N4 . DC A 1 1 ? -17.740 13.089 24.888 1.00 5.11 ? 1 DC A N4 1 HETATM 15 C C5 . DC A 1 1 ? -18.257 15.368 24.520 1.00 24.25 ? 1 DC A C5 1 HETATM 16 C C6 . DC A 1 1 ? -17.774 16.595 24.397 1.00 26.82 ? 1 DC A C6 1 HETATM 17 P P . DG A 1 2 ? -14.515 22.133 21.676 1.00 75.83 ? 2 DG A P 1 HETATM 18 O OP1 . DG A 1 2 ? -13.707 22.973 22.642 1.00 65.44 ? 2 DG A OP1 1 HETATM 19 O OP2 . DG A 1 2 ? -15.377 23.085 20.865 1.00 69.51 ? 2 DG A OP2 1 HETATM 20 O "O5'" . DG A 1 2 ? -13.678 21.103 20.732 1.00 58.22 ? 2 DG A "O5'" 1 HETATM 21 C "C5'" . DG A 1 2 ? -12.463 20.494 21.127 1.00 33.03 ? 2 DG A "C5'" 1 HETATM 22 C "C4'" . DG A 1 2 ? -11.899 19.697 19.969 1.00 22.35 ? 2 DG A "C4'" 1 HETATM 23 O "O4'" . DG A 1 2 ? -12.805 18.655 19.862 1.00 21.87 ? 2 DG A "O4'" 1 HETATM 24 C "C3'" . DG A 1 2 ? -11.820 20.295 18.571 1.00 32.60 ? 2 DG A "C3'" 1 HETATM 25 O "O3'" . DG A 1 2 ? -10.599 19.860 17.926 1.00 48.60 ? 2 DG A "O3'" 1 HETATM 26 C "C2'" . DG A 1 2 ? -13.151 19.834 17.904 1.00 21.39 ? 2 DG A "C2'" 1 HETATM 27 C "C1'" . DG A 1 2 ? -13.086 18.414 18.475 1.00 24.79 ? 2 DG A "C1'" 1 HETATM 28 N N9 . DG A 1 2 ? -14.257 17.547 18.411 1.00 12.46 ? 2 DG A N9 1 HETATM 29 C C8 . DG A 1 2 ? -15.568 17.892 18.395 1.00 14.49 ? 2 DG A C8 1 HETATM 30 N N7 . DG A 1 2 ? -16.348 16.831 18.320 1.00 15.19 ? 2 DG A N7 1 HETATM 31 C C5 . DG A 1 2 ? -15.565 15.714 18.267 1.00 4.73 ? 2 DG A C5 1 HETATM 32 C C6 . DG A 1 2 ? -15.809 14.344 18.171 1.00 9.56 ? 2 DG A C6 1 HETATM 33 O O6 . DG A 1 2 ? -16.912 13.855 18.091 1.00 6.46 ? 2 DG A O6 1 HETATM 34 N N1 . DG A 1 2 ? -14.740 13.504 18.171 1.00 7.94 ? 2 DG A N1 1 HETATM 35 C C2 . DG A 1 2 ? -13.471 14.063 18.235 1.00 2.34 ? 2 DG A C2 1 HETATM 36 N N2 . DG A 1 2 ? -12.429 13.213 18.240 1.00 2.00 ? 2 DG A N2 1 HETATM 37 N N3 . DG A 1 2 ? -13.154 15.346 18.326 1.00 20.84 ? 2 DG A N3 1 HETATM 38 C C4 . DG A 1 2 ? -14.251 16.137 18.347 1.00 17.35 ? 2 DG A C4 1 HETATM 39 P P . DG A 1 3 ? -9.836 20.881 16.976 1.00 54.31 ? 3 DG A P 1 HETATM 40 O OP1 . DG A 1 3 ? -9.920 22.268 17.563 1.00 16.66 ? 3 DG A OP1 1 HETATM 41 O OP2 . DG A 1 3 ? -10.546 20.755 15.669 1.00 69.40 ? 3 DG A OP2 1 HETATM 42 O "O5'" . DG A 1 3 ? -8.311 20.561 16.939 1.00 23.11 ? 3 DG A "O5'" 1 HETATM 43 C "C5'" . DG A 1 3 ? -7.860 19.537 17.835 1.00 15.18 ? 3 DG A "C5'" 1 HETATM 44 C "C4'" . DG A 1 3 ? -7.489 18.380 16.912 1.00 27.56 ? 3 DG A "C4'" 1 HETATM 45 O "O4'" . DG A 1 3 ? -8.609 17.496 16.848 1.00 20.36 ? 3 DG A "O4'" 1 HETATM 46 C "C3'" . DG A 1 3 ? -7.144 18.745 15.471 1.00 15.85 ? 3 DG A "C3'" 1 HETATM 47 O "O3'" . DG A 1 3 ? -6.125 17.926 15.002 1.00 28.99 ? 3 DG A "O3'" 1 HETATM 48 C "C2'" . DG A 1 3 ? -8.483 18.459 14.709 1.00 23.83 ? 3 DG A "C2'" 1 HETATM 49 C "C1'" . DG A 1 3 ? -8.974 17.257 15.466 1.00 15.37 ? 3 DG A "C1'" 1 HETATM 50 N N9 . DG A 1 3 ? -10.428 17.103 15.295 1.00 10.44 ? 3 DG A N9 1 HETATM 51 C C8 . DG A 1 3 ? -11.447 17.956 15.279 1.00 8.67 ? 3 DG A C8 1 HETATM 52 N N7 . DG A 1 3 ? -12.668 17.387 15.146 1.00 6.41 ? 3 DG A N7 1 HETATM 53 C C5 . DG A 1 3 ? -12.376 16.034 15.109 1.00 12.31 ? 3 DG A C5 1 HETATM 54 C C6 . DG A 1 3 ? -13.232 14.916 15.002 1.00 8.94 ? 3 DG A C6 1 HETATM 55 O O6 . DG A 1 3 ? -14.456 14.759 14.885 1.00 14.38 ? 3 DG A O6 1 HETATM 56 N N1 . DG A 1 3 ? -12.522 13.740 15.077 1.00 2.00 ? 3 DG A N1 1 HETATM 57 C C2 . DG A 1 3 ? -11.172 13.670 15.135 1.00 7.33 ? 3 DG A C2 1 HETATM 58 N N2 . DG A 1 3 ? -10.779 12.429 15.093 1.00 2.00 ? 3 DG A N2 1 HETATM 59 N N3 . DG A 1 3 ? -10.333 14.653 15.237 1.00 12.94 ? 3 DG A N3 1 HETATM 60 C C4 . DG A 1 3 ? -11.012 15.823 15.210 1.00 12.53 ? 3 DG A C4 1 HETATM 61 P P . DC A 1 4 ? -5.106 18.100 13.802 1.00 27.47 ? 4 DC A P 1 HETATM 62 O OP1 . DC A 1 4 ? -3.840 17.693 14.613 1.00 11.86 ? 4 DC A OP1 1 HETATM 63 O OP2 . DC A 1 4 ? -5.134 19.481 13.359 1.00 33.52 ? 4 DC A OP2 1 HETATM 64 O "O5'" . DC A 1 4 ? -5.359 16.766 12.932 1.00 19.02 ? 4 DC A "O5'" 1 HETATM 65 C "C5'" . DC A 1 4 ? -4.806 15.500 13.412 1.00 9.30 ? 4 DC A "C5'" 1 HETATM 66 C "C4'" . DC A 1 4 ? -5.673 14.450 12.793 1.00 22.38 ? 4 DC A "C4'" 1 HETATM 67 O "O4'" . DC A 1 4 ? -7.015 14.672 13.017 1.00 19.58 ? 4 DC A "O4'" 1 HETATM 68 C "C3'" . DC A 1 4 ? -5.535 14.504 11.278 1.00 41.63 ? 4 DC A "C3'" 1 HETATM 69 O "O3'" . DC A 1 4 ? -4.749 13.384 10.894 1.00 62.12 ? 4 DC A "O3'" 1 HETATM 70 C "C2'" . DC A 1 4 ? -6.936 14.442 10.761 1.00 29.96 ? 4 DC A "C2'" 1 HETATM 71 C "C1'" . DC A 1 4 ? -7.773 14.032 11.961 1.00 9.37 ? 4 DC A "C1'" 1 HETATM 72 N N1 . DC A 1 4 ? -9.126 14.641 11.838 1.00 17.15 ? 4 DC A N1 1 HETATM 73 C C2 . DC A 1 4 ? -10.271 13.827 11.764 1.00 7.04 ? 4 DC A C2 1 HETATM 74 O O2 . DC A 1 4 ? -10.220 12.575 11.796 1.00 21.58 ? 4 DC A O2 1 HETATM 75 N N3 . DC A 1 4 ? -11.534 14.425 11.636 1.00 5.28 ? 4 DC A N3 1 HETATM 76 C C4 . DC A 1 4 ? -11.629 15.773 11.598 1.00 2.00 ? 4 DC A C4 1 HETATM 77 N N4 . DC A 1 4 ? -12.828 16.311 11.454 1.00 16.96 ? 4 DC A N4 1 HETATM 78 C C5 . DC A 1 4 ? -10.456 16.542 11.646 1.00 4.22 ? 4 DC A C5 1 HETATM 79 C C6 . DC A 1 4 ? -9.283 15.955 11.780 1.00 12.02 ? 4 DC A C6 1 HETATM 80 P P . DC A 1 5 ? -3.719 13.443 9.651 1.00 47.78 ? 5 DC A P 1 HETATM 81 O OP1 . DC A 1 5 ? -2.650 12.480 9.918 1.00 59.71 ? 5 DC A OP1 1 HETATM 82 O OP2 . DC A 1 5 ? -3.222 14.855 9.635 1.00 62.69 ? 5 DC A OP2 1 HETATM 83 O "O5'" . DC A 1 5 ? -4.682 13.053 8.456 1.00 48.62 ? 5 DC A "O5'" 1 HETATM 84 C "C5'" . DC A 1 5 ? -4.929 11.632 8.227 1.00 35.27 ? 5 DC A "C5'" 1 HETATM 85 C "C4'" . DC A 1 5 ? -6.288 11.697 7.544 1.00 16.85 ? 5 DC A "C4'" 1 HETATM 86 O "O4'" . DC A 1 5 ? -6.973 12.704 8.323 1.00 35.13 ? 5 DC A "O4'" 1 HETATM 87 C "C3'" . DC A 1 5 ? -6.302 12.261 6.130 1.00 29.47 ? 5 DC A "C3'" 1 HETATM 88 O "O3'" . DC A 1 5 ? -6.973 11.497 5.127 1.00 23.41 ? 5 DC A "O3'" 1 HETATM 89 C "C2'" . DC A 1 5 ? -6.872 13.676 6.343 1.00 14.93 ? 5 DC A "C2'" 1 HETATM 90 C "C1'" . DC A 1 5 ? -7.913 13.286 7.416 1.00 5.42 ? 5 DC A "C1'" 1 HETATM 91 N N1 . DC A 1 5 ? -8.814 14.377 7.773 1.00 11.14 ? 5 DC A N1 1 HETATM 92 C C2 . DC A 1 5 ? -10.189 14.055 7.954 1.00 7.75 ? 5 DC A C2 1 HETATM 93 O O2 . DC A 1 5 ? -10.672 12.884 7.906 1.00 15.37 ? 5 DC A O2 1 HETATM 94 N N3 . DC A 1 5 ? -11.017 15.102 8.253 1.00 8.62 ? 5 DC A N3 1 HETATM 95 C C4 . DC A 1 5 ? -10.594 16.317 8.381 1.00 3.00 ? 5 DC A C4 1 HETATM 96 N N4 . DC A 1 5 ? -11.492 17.266 8.632 1.00 7.52 ? 5 DC A N4 1 HETATM 97 C C5 . DC A 1 5 ? -9.190 16.646 8.179 1.00 4.57 ? 5 DC A C5 1 HETATM 98 C C6 . DC A 1 5 ? -8.337 15.652 7.901 1.00 5.04 ? 5 DC A C6 1 HETATM 99 P P . DG A 1 6 ? -6.072 10.470 4.172 1.00 23.74 ? 6 DG A P 1 HETATM 100 O OP1 . DG A 1 6 ? -5.468 9.300 4.951 1.00 42.39 ? 6 DG A OP1 1 HETATM 101 O OP2 . DG A 1 6 ? -5.154 11.273 3.398 1.00 10.84 ? 6 DG A OP2 1 HETATM 102 O "O5'" . DG A 1 6 ? -7.424 9.875 3.441 1.00 22.53 ? 6 DG A "O5'" 1 HETATM 103 C "C5'" . DG A 1 6 ? -7.756 8.497 3.777 1.00 42.63 ? 6 DG A "C5'" 1 HETATM 104 C "C4'" . DG A 1 6 ? -8.615 8.283 2.502 1.00 45.74 ? 6 DG A "C4'" 1 HETATM 105 O "O4'" . DG A 1 6 ? -9.580 9.325 2.705 1.00 29.19 ? 6 DG A "O4'" 1 HETATM 106 C "C3'" . DG A 1 6 ? -7.871 8.755 1.243 1.00 46.79 ? 6 DG A "C3'" 1 HETATM 107 O "O3'" . DG A 1 6 ? -6.908 7.902 0.656 1.00 53.97 ? 6 DG A "O3'" 1 HETATM 108 C "C2'" . DG A 1 6 ? -9.041 9.207 0.389 1.00 35.66 ? 6 DG A "C2'" 1 HETATM 109 C "C1'" . DG A 1 6 ? -10.010 9.799 1.398 1.00 22.35 ? 6 DG A "C1'" 1 HETATM 110 N N9 . DG A 1 6 ? -10.102 11.279 1.440 1.00 9.59 ? 6 DG A N9 1 HETATM 111 C C8 . DG A 1 6 ? -9.041 12.137 1.467 1.00 2.00 ? 6 DG A C8 1 HETATM 112 N N7 . DG A 1 6 ? -9.395 13.381 1.499 1.00 12.93 ? 6 DG A N7 1 HETATM 113 C C5 . DG A 1 6 ? -10.810 13.339 1.478 1.00 7.35 ? 6 DG A C5 1 HETATM 114 C C6 . DG A 1 6 ? -11.781 14.383 1.510 1.00 5.47 ? 6 DG A C6 1 HETATM 115 O O6 . DG A 1 6 ? -11.649 15.613 1.590 1.00 10.55 ? 6 DG A O6 1 HETATM 116 N N1 . DG A 1 6 ? -13.072 13.909 1.499 1.00 14.41 ? 6 DG A N1 1 HETATM 117 C C2 . DG A 1 6 ? -13.384 12.589 1.435 1.00 2.00 ? 6 DG A C2 1 HETATM 118 N N2 . DG A 1 6 ? -14.647 12.224 1.387 1.00 5.70 ? 6 DG A N2 1 HETATM 119 N N3 . DG A 1 6 ? -12.449 11.618 1.403 1.00 4.38 ? 6 DG A N3 1 HETATM 120 C C4 . DG A 1 6 ? -11.220 12.067 1.435 1.00 2.15 ? 6 DG A C4 1 HETATM 121 C C1 . DM1 A 2 . ? -12.056 18.591 5.250 1.00 6.70 ? 7 DM1 A C1 1 HETATM 122 C C2 . DM1 A 2 . ? -10.824 19.307 5.244 1.00 18.47 ? 7 DM1 A C2 1 HETATM 123 C C3 . DM1 A 2 . ? -9.634 18.703 5.111 1.00 25.90 ? 7 DM1 A C3 1 HETATM 124 C C4 . DM1 A 2 . ? -9.575 17.297 4.967 1.00 26.46 ? 7 DM1 A C4 1 HETATM 125 O O4 . DM1 A 2 . ? -8.429 16.679 4.764 1.00 27.22 ? 7 DM1 A O4 1 HETATM 126 C C5 . DM1 A 2 . ? -10.793 16.547 4.967 1.00 19.40 ? 7 DM1 A C5 1 HETATM 127 C C6 . DM1 A 2 . ? -10.784 15.113 4.801 1.00 2.00 ? 7 DM1 A C6 1 HETATM 128 O O6 . DM1 A 2 . ? -9.723 14.501 4.583 1.00 18.84 ? 7 DM1 A O6 1 HETATM 129 C C7 . DM1 A 2 . ? -12.098 14.445 4.823 1.00 3.59 ? 7 DM1 A C7 1 HETATM 130 C C8 . DM1 A 2 . ? -12.126 13.061 4.679 1.00 12.48 ? 7 DM1 A C8 1 HETATM 131 O O8 . DM1 A 2 . ? -11.017 12.295 4.407 1.00 17.33 ? 7 DM1 A O8 1 HETATM 132 C C9 . DM1 A 2 . ? -13.392 12.401 4.663 1.00 9.72 ? 7 DM1 A C9 1 HETATM 133 C C10 . DM1 A 2 . ? -13.325 10.883 4.684 1.00 11.64 ? 7 DM1 A C10 1 HETATM 134 O O10 . DM1 A 2 . ? -12.328 10.728 5.714 1.00 25.47 ? 7 DM1 A O10 1 HETATM 135 C C11 . DM1 A 2 . ? -14.759 10.254 4.647 1.00 20.27 ? 7 DM1 A C11 1 HETATM 136 C C12 . DM1 A 2 . ? -16.067 10.872 5.271 1.00 18.74 ? 7 DM1 A C12 1 HETATM 137 O O12 . DM1 A 2 . ? -15.433 10.933 6.594 1.00 33.94 ? 7 DM1 A O12 1 HETATM 138 C C13 . DM1 A 2 . ? -17.499 10.372 5.042 1.00 10.36 ? 7 DM1 A C13 1 HETATM 139 O O13 . DM1 A 2 . ? -18.389 10.998 4.444 1.00 20.60 ? 7 DM1 A O13 1 HETATM 140 C C14 . DM1 A 2 . ? -17.530 8.980 5.538 1.00 4.91 ? 7 DM1 A C14 1 HETATM 141 C C15 . DM1 A 2 . ? -15.916 12.379 4.956 1.00 13.25 ? 7 DM1 A C15 1 HETATM 142 C C16 . DM1 A 2 . ? -14.568 13.039 4.801 1.00 12.01 ? 7 DM1 A C16 1 HETATM 143 C C17 . DM1 A 2 . ? -14.566 14.459 4.967 1.00 18.61 ? 7 DM1 A C17 1 HETATM 144 O O17 . DM1 A 2 . ? -15.753 15.065 5.170 1.00 20.29 ? 7 DM1 A O17 1 HETATM 145 C C18 . DM1 A 2 . ? -13.308 15.121 4.946 1.00 15.20 ? 7 DM1 A C18 1 HETATM 146 C C19 . DM1 A 2 . ? -13.333 16.573 5.116 1.00 10.58 ? 7 DM1 A C19 1 HETATM 147 O O19 . DM1 A 2 . ? -14.403 17.187 5.330 1.00 17.03 ? 7 DM1 A O19 1 HETATM 148 C C20 . DM1 A 2 . ? -11.977 17.227 5.111 1.00 16.51 ? 7 DM1 A C20 1 HETATM 149 C C21 . DM1 A 2 . ? -7.186 17.462 4.769 1.00 29.21 ? 7 DM1 A C21 1 HETATM 150 C "C1'" . DM1 A 2 . ? -11.643 9.524 5.591 1.00 32.49 ? 7 DM1 A "C1'" 1 HETATM 151 C "C2'" . DM1 A 2 . ? -11.088 9.485 7.005 1.00 43.28 ? 7 DM1 A "C2'" 1 HETATM 152 C "C3'" . DM1 A 2 . ? -12.210 9.047 7.965 1.00 41.62 ? 7 DM1 A "C3'" 1 HETATM 153 N "N3'" . DM1 A 2 . ? -11.725 9.179 9.363 1.00 55.77 ? 7 DM1 A "N3'" 1 HETATM 154 C "C4'" . DM1 A 2 . ? -12.486 7.607 7.576 1.00 52.51 ? 7 DM1 A "C4'" 1 HETATM 155 O "O4'" . DM1 A 2 . ? -11.503 6.734 8.093 1.00 56.38 ? 7 DM1 A "O4'" 1 HETATM 156 C "C5'" . DM1 A 2 . ? -13.005 7.520 6.178 1.00 54.71 ? 7 DM1 A "C5'" 1 HETATM 157 O "O5'" . DM1 A 2 . ? -12.345 8.348 5.207 1.00 57.65 ? 7 DM1 A "O5'" 1 HETATM 158 C "C6'" . DM1 A 2 . ? -12.968 6.060 5.586 1.00 42.32 ? 7 DM1 A "C6'" 1 HETATM 1 O "O5'" . DC B 1 1 ? -20.418 19.029 3.473 1.00 33.16 ? 1 DC B "O5'" 1 HETATM 2 C "C5'" . DC B 1 1 ? -21.255 18.133 2.684 1.00 45.58 ? 1 DC B "C5'" 1 HETATM 3 C "C4'" . DC B 1 1 ? -20.415 16.884 2.529 1.00 31.91 ? 1 DC B "C4'" 1 HETATM 4 O "O4'" . DC B 1 1 ? -19.183 17.008 1.894 1.00 34.69 ? 1 DC B "O4'" 1 HETATM 5 C "C3'" . DC B 1 1 ? -20.132 16.118 3.825 1.00 51.36 ? 1 DC B "C3'" 1 HETATM 6 O "O3'" . DC B 1 1 ? -21.145 15.253 4.081 1.00 63.33 ? 1 DC B "O3'" 1 HETATM 7 C "C2'" . DC B 1 1 ? -18.714 15.596 3.697 1.00 44.64 ? 1 DC B "C2'" 1 HETATM 8 C "C1'" . DC B 1 1 ? -18.260 15.947 2.299 1.00 21.42 ? 1 DC B "C1'" 1 HETATM 9 N N1 . DC B 1 1 ? -16.895 16.429 2.203 1.00 16.02 ? 1 DC B N1 1 HETATM 10 C C2 . DC B 1 1 ? -15.882 15.517 1.974 1.00 12.97 ? 1 DC B C2 1 HETATM 11 O O2 . DC B 1 1 ? -16.042 14.318 1.862 1.00 14.18 ? 1 DC B O2 1 HETATM 12 N N3 . DC B 1 1 ? -14.602 15.958 1.899 1.00 6.27 ? 1 DC B N3 1 HETATM 13 C C4 . DC B 1 1 ? -14.327 17.308 1.947 1.00 5.01 ? 1 DC B C4 1 HETATM 14 N N4 . DC B 1 1 ? -13.089 17.740 1.787 1.00 5.11 ? 1 DC B N4 1 HETATM 15 C C5 . DC B 1 1 ? -15.368 18.257 2.155 1.00 24.25 ? 1 DC B C5 1 HETATM 16 C C6 . DC B 1 1 ? -16.595 17.774 2.278 1.00 26.82 ? 1 DC B C6 1 HETATM 17 P P . DG B 1 2 ? -22.133 14.515 4.999 1.00 75.83 ? 2 DG B P 1 HETATM 18 O OP1 . DG B 1 2 ? -22.973 13.707 4.033 1.00 65.44 ? 2 DG B OP1 1 HETATM 19 O OP2 . DG B 1 2 ? -23.085 15.377 5.810 1.00 69.51 ? 2 DG B OP2 1 HETATM 20 O "O5'" . DG B 1 2 ? -21.103 13.678 5.943 1.00 58.22 ? 2 DG B "O5'" 1 HETATM 21 C "C5'" . DG B 1 2 ? -20.494 12.463 5.548 1.00 33.03 ? 2 DG B "C5'" 1 HETATM 22 C "C4'" . DG B 1 2 ? -19.697 11.899 6.706 1.00 22.35 ? 2 DG B "C4'" 1 HETATM 23 O "O4'" . DG B 1 2 ? -18.655 12.805 6.813 1.00 21.87 ? 2 DG B "O4'" 1 HETATM 24 C "C3'" . DG B 1 2 ? -20.295 11.820 8.104 1.00 32.60 ? 2 DG B "C3'" 1 HETATM 25 O "O3'" . DG B 1 2 ? -19.860 10.599 8.749 1.00 48.60 ? 2 DG B "O3'" 1 HETATM 26 C "C2'" . DG B 1 2 ? -19.834 13.151 8.771 1.00 21.39 ? 2 DG B "C2'" 1 HETATM 27 C "C1'" . DG B 1 2 ? -18.414 13.086 8.200 1.00 24.79 ? 2 DG B "C1'" 1 HETATM 28 N N9 . DG B 1 2 ? -17.547 14.257 8.264 1.00 12.46 ? 2 DG B N9 1 HETATM 29 C C8 . DG B 1 2 ? -17.892 15.568 8.280 1.00 14.49 ? 2 DG B C8 1 HETATM 30 N N7 . DG B 1 2 ? -16.831 16.348 8.355 1.00 15.19 ? 2 DG B N7 1 HETATM 31 C C5 . DG B 1 2 ? -15.714 15.565 8.408 1.00 4.73 ? 2 DG B C5 1 HETATM 32 C C6 . DG B 1 2 ? -14.344 15.809 8.504 1.00 9.56 ? 2 DG B C6 1 HETATM 33 O O6 . DG B 1 2 ? -13.855 16.912 8.584 1.00 6.46 ? 2 DG B O6 1 HETATM 34 N N1 . DG B 1 2 ? -13.504 14.740 8.504 1.00 7.94 ? 2 DG B N1 1 HETATM 35 C C2 . DG B 1 2 ? -14.063 13.471 8.440 1.00 2.34 ? 2 DG B C2 1 HETATM 36 N N2 . DG B 1 2 ? -13.213 12.429 8.435 1.00 2.00 ? 2 DG B N2 1 HETATM 37 N N3 . DG B 1 2 ? -15.346 13.154 8.349 1.00 20.84 ? 2 DG B N3 1 HETATM 38 C C4 . DG B 1 2 ? -16.137 14.251 8.328 1.00 17.35 ? 2 DG B C4 1 HETATM 39 P P . DG B 1 3 ? -20.881 9.836 9.699 1.00 54.31 ? 3 DG B P 1 HETATM 40 O OP1 . DG B 1 3 ? -22.268 9.920 9.112 1.00 16.66 ? 3 DG B OP1 1 HETATM 41 O OP2 . DG B 1 3 ? -20.755 10.546 11.006 1.00 69.40 ? 3 DG B OP2 1 HETATM 42 O "O5'" . DG B 1 3 ? -20.561 8.311 9.736 1.00 23.11 ? 3 DG B "O5'" 1 HETATM 43 C "C5'" . DG B 1 3 ? -19.537 7.860 8.840 1.00 15.18 ? 3 DG B "C5'" 1 HETATM 44 C "C4'" . DG B 1 3 ? -18.380 7.489 9.763 1.00 27.56 ? 3 DG B "C4'" 1 HETATM 45 O "O4'" . DG B 1 3 ? -17.496 8.609 9.827 1.00 20.36 ? 3 DG B "O4'" 1 HETATM 46 C "C3'" . DG B 1 3 ? -18.745 7.144 11.204 1.00 15.85 ? 3 DG B "C3'" 1 HETATM 47 O "O3'" . DG B 1 3 ? -17.926 6.125 11.673 1.00 28.99 ? 3 DG B "O3'" 1 HETATM 48 C "C2'" . DG B 1 3 ? -18.459 8.483 11.966 1.00 23.83 ? 3 DG B "C2'" 1 HETATM 49 C "C1'" . DG B 1 3 ? -17.257 8.974 11.209 1.00 15.37 ? 3 DG B "C1'" 1 HETATM 50 N N9 . DG B 1 3 ? -17.103 10.428 11.380 1.00 10.44 ? 3 DG B N9 1 HETATM 51 C C8 . DG B 1 3 ? -17.956 11.447 11.396 1.00 8.67 ? 3 DG B C8 1 HETATM 52 N N7 . DG B 1 3 ? -17.387 12.668 11.529 1.00 6.41 ? 3 DG B N7 1 HETATM 53 C C5 . DG B 1 3 ? -16.034 12.376 11.566 1.00 12.31 ? 3 DG B C5 1 HETATM 54 C C6 . DG B 1 3 ? -14.916 13.232 11.673 1.00 8.94 ? 3 DG B C6 1 HETATM 55 O O6 . DG B 1 3 ? -14.759 14.456 11.790 1.00 14.38 ? 3 DG B O6 1 HETATM 56 N N1 . DG B 1 3 ? -13.740 12.522 11.598 1.00 2.00 ? 3 DG B N1 1 HETATM 57 C C2 . DG B 1 3 ? -13.670 11.172 11.540 1.00 7.33 ? 3 DG B C2 1 HETATM 58 N N2 . DG B 1 3 ? -12.429 10.779 11.582 1.00 2.00 ? 3 DG B N2 1 HETATM 59 N N3 . DG B 1 3 ? -14.653 10.333 11.438 1.00 12.94 ? 3 DG B N3 1 HETATM 60 C C4 . DG B 1 3 ? -15.823 11.012 11.465 1.00 12.53 ? 3 DG B C4 1 HETATM 61 P P . DC B 1 4 ? -18.100 5.106 12.873 1.00 27.47 ? 4 DC B P 1 HETATM 62 O OP1 . DC B 1 4 ? -17.693 3.840 12.062 1.00 11.86 ? 4 DC B OP1 1 HETATM 63 O OP2 . DC B 1 4 ? -19.481 5.134 13.316 1.00 33.52 ? 4 DC B OP2 1 HETATM 64 O "O5'" . DC B 1 4 ? -16.766 5.359 13.743 1.00 19.02 ? 4 DC B "O5'" 1 HETATM 65 C "C5'" . DC B 1 4 ? -15.500 4.806 13.263 1.00 9.30 ? 4 DC B "C5'" 1 HETATM 66 C "C4'" . DC B 1 4 ? -14.450 5.673 13.882 1.00 22.38 ? 4 DC B "C4'" 1 HETATM 67 O "O4'" . DC B 1 4 ? -14.672 7.015 13.658 1.00 19.58 ? 4 DC B "O4'" 1 HETATM 68 C "C3'" . DC B 1 4 ? -14.504 5.535 15.397 1.00 41.63 ? 4 DC B "C3'" 1 HETATM 69 O "O3'" . DC B 1 4 ? -13.384 4.749 15.781 1.00 62.12 ? 4 DC B "O3'" 1 HETATM 70 C "C2'" . DC B 1 4 ? -14.442 6.936 15.914 1.00 29.96 ? 4 DC B "C2'" 1 HETATM 71 C "C1'" . DC B 1 4 ? -14.032 7.773 14.714 1.00 9.37 ? 4 DC B "C1'" 1 HETATM 72 N N1 . DC B 1 4 ? -14.641 9.126 14.837 1.00 17.15 ? 4 DC B N1 1 HETATM 73 C C2 . DC B 1 4 ? -13.827 10.271 14.911 1.00 7.04 ? 4 DC B C2 1 HETATM 74 O O2 . DC B 1 4 ? -12.575 10.220 14.879 1.00 21.58 ? 4 DC B O2 1 HETATM 75 N N3 . DC B 1 4 ? -14.425 11.534 15.039 1.00 5.28 ? 4 DC B N3 1 HETATM 76 C C4 . DC B 1 4 ? -15.773 11.629 15.077 1.00 2.00 ? 4 DC B C4 1 HETATM 77 N N4 . DC B 1 4 ? -16.311 12.828 15.221 1.00 16.96 ? 4 DC B N4 1 HETATM 78 C C5 . DC B 1 4 ? -16.542 10.456 15.029 1.00 4.22 ? 4 DC B C5 1 HETATM 79 C C6 . DC B 1 4 ? -15.955 9.283 14.895 1.00 12.02 ? 4 DC B C6 1 HETATM 80 P P . DC B 1 5 ? -13.443 3.719 17.024 1.00 47.78 ? 5 DC B P 1 HETATM 81 O OP1 . DC B 1 5 ? -12.480 2.650 16.757 1.00 59.71 ? 5 DC B OP1 1 HETATM 82 O OP2 . DC B 1 5 ? -14.855 3.222 17.040 1.00 62.69 ? 5 DC B OP2 1 HETATM 83 O "O5'" . DC B 1 5 ? -13.053 4.682 18.219 1.00 48.62 ? 5 DC B "O5'" 1 HETATM 84 C "C5'" . DC B 1 5 ? -11.632 4.929 18.448 1.00 35.27 ? 5 DC B "C5'" 1 HETATM 85 C "C4'" . DC B 1 5 ? -11.697 6.288 19.131 1.00 16.85 ? 5 DC B "C4'" 1 HETATM 86 O "O4'" . DC B 1 5 ? -12.704 6.973 18.352 1.00 35.13 ? 5 DC B "O4'" 1 HETATM 87 C "C3'" . DC B 1 5 ? -12.261 6.302 20.545 1.00 29.47 ? 5 DC B "C3'" 1 HETATM 88 O "O3'" . DC B 1 5 ? -11.497 6.973 21.548 1.00 23.41 ? 5 DC B "O3'" 1 HETATM 89 C "C2'" . DC B 1 5 ? -13.676 6.872 20.332 1.00 14.93 ? 5 DC B "C2'" 1 HETATM 90 C "C1'" . DC B 1 5 ? -13.286 7.913 19.259 1.00 5.42 ? 5 DC B "C1'" 1 HETATM 91 N N1 . DC B 1 5 ? -14.377 8.814 18.902 1.00 11.14 ? 5 DC B N1 1 HETATM 92 C C2 . DC B 1 5 ? -14.055 10.189 18.721 1.00 7.75 ? 5 DC B C2 1 HETATM 93 O O2 . DC B 1 5 ? -12.884 10.672 18.769 1.00 15.37 ? 5 DC B O2 1 HETATM 94 N N3 . DC B 1 5 ? -15.102 11.017 18.422 1.00 8.62 ? 5 DC B N3 1 HETATM 95 C C4 . DC B 1 5 ? -16.317 10.594 18.294 1.00 3.00 ? 5 DC B C4 1 HETATM 96 N N4 . DC B 1 5 ? -17.266 11.492 18.043 1.00 7.52 ? 5 DC B N4 1 HETATM 97 C C5 . DC B 1 5 ? -16.646 9.190 18.496 1.00 4.57 ? 5 DC B C5 1 HETATM 98 C C6 . DC B 1 5 ? -15.652 8.337 18.774 1.00 5.04 ? 5 DC B C6 1 HETATM 99 P P . DG B 1 6 ? -10.470 6.072 22.503 1.00 23.74 ? 6 DG B P 1 HETATM 100 O OP1 . DG B 1 6 ? -9.300 5.468 21.724 1.00 42.39 ? 6 DG B OP1 1 HETATM 101 O OP2 . DG B 1 6 ? -11.273 5.154 23.277 1.00 10.84 ? 6 DG B OP2 1 HETATM 102 O "O5'" . DG B 1 6 ? -9.875 7.424 23.234 1.00 22.53 ? 6 DG B "O5'" 1 HETATM 103 C "C5'" . DG B 1 6 ? -8.497 7.756 22.898 1.00 42.63 ? 6 DG B "C5'" 1 HETATM 104 C "C4'" . DG B 1 6 ? -8.283 8.615 24.173 1.00 45.74 ? 6 DG B "C4'" 1 HETATM 105 O "O4'" . DG B 1 6 ? -9.325 9.580 23.970 1.00 29.19 ? 6 DG B "O4'" 1 HETATM 106 C "C3'" . DG B 1 6 ? -8.755 7.871 25.432 1.00 46.79 ? 6 DG B "C3'" 1 HETATM 107 O "O3'" . DG B 1 6 ? -7.902 6.908 26.019 1.00 53.97 ? 6 DG B "O3'" 1 HETATM 108 C "C2'" . DG B 1 6 ? -9.207 9.041 26.286 1.00 35.66 ? 6 DG B "C2'" 1 HETATM 109 C "C1'" . DG B 1 6 ? -9.799 10.010 25.277 1.00 22.35 ? 6 DG B "C1'" 1 HETATM 110 N N9 . DG B 1 6 ? -11.279 10.102 25.235 1.00 9.59 ? 6 DG B N9 1 HETATM 111 C C8 . DG B 1 6 ? -12.137 9.041 25.208 1.00 2.00 ? 6 DG B C8 1 HETATM 112 N N7 . DG B 1 6 ? -13.381 9.395 25.176 1.00 12.93 ? 6 DG B N7 1 HETATM 113 C C5 . DG B 1 6 ? -13.339 10.810 25.197 1.00 7.35 ? 6 DG B C5 1 HETATM 114 C C6 . DG B 1 6 ? -14.383 11.781 25.165 1.00 5.47 ? 6 DG B C6 1 HETATM 115 O O6 . DG B 1 6 ? -15.613 11.649 25.085 1.00 10.55 ? 6 DG B O6 1 HETATM 116 N N1 . DG B 1 6 ? -13.909 13.072 25.176 1.00 14.41 ? 6 DG B N1 1 HETATM 117 C C2 . DG B 1 6 ? -12.589 13.384 25.240 1.00 2.00 ? 6 DG B C2 1 HETATM 118 N N2 . DG B 1 6 ? -12.224 14.647 25.288 1.00 5.70 ? 6 DG B N2 1 HETATM 119 N N3 . DG B 1 6 ? -11.618 12.449 25.272 1.00 4.38 ? 6 DG B N3 1 HETATM 120 C C4 . DG B 1 6 ? -12.067 11.220 25.240 1.00 2.15 ? 6 DG B C4 1 HETATM 121 C C1 . DM1 B 2 . ? -18.591 12.056 21.425 1.00 6.70 ? 7 DM1 B C1 1 HETATM 122 C C2 . DM1 B 2 . ? -19.307 10.824 21.431 1.00 18.47 ? 7 DM1 B C2 1 HETATM 123 C C3 . DM1 B 2 . ? -18.703 9.634 21.564 1.00 25.90 ? 7 DM1 B C3 1 HETATM 124 C C4 . DM1 B 2 . ? -17.297 9.575 21.708 1.00 26.46 ? 7 DM1 B C4 1 HETATM 125 O O4 . DM1 B 2 . ? -16.679 8.429 21.911 1.00 27.22 ? 7 DM1 B O4 1 HETATM 126 C C5 . DM1 B 2 . ? -16.547 10.793 21.708 1.00 19.40 ? 7 DM1 B C5 1 HETATM 127 C C6 . DM1 B 2 . ? -15.113 10.784 21.874 1.00 2.00 ? 7 DM1 B C6 1 HETATM 128 O O6 . DM1 B 2 . ? -14.501 9.723 22.092 1.00 18.84 ? 7 DM1 B O6 1 HETATM 129 C C7 . DM1 B 2 . ? -14.445 12.098 21.852 1.00 3.59 ? 7 DM1 B C7 1 HETATM 130 C C8 . DM1 B 2 . ? -13.061 12.126 21.996 1.00 12.48 ? 7 DM1 B C8 1 HETATM 131 O O8 . DM1 B 2 . ? -12.295 11.017 22.268 1.00 17.33 ? 7 DM1 B O8 1 HETATM 132 C C9 . DM1 B 2 . ? -12.401 13.392 22.012 1.00 9.72 ? 7 DM1 B C9 1 HETATM 133 C C10 . DM1 B 2 . ? -10.883 13.325 21.991 1.00 11.64 ? 7 DM1 B C10 1 HETATM 134 O O10 . DM1 B 2 . ? -10.728 12.328 20.961 1.00 25.47 ? 7 DM1 B O10 1 HETATM 135 C C11 . DM1 B 2 . ? -10.254 14.759 22.028 1.00 20.27 ? 7 DM1 B C11 1 HETATM 136 C C12 . DM1 B 2 . ? -10.872 16.067 21.404 1.00 18.74 ? 7 DM1 B C12 1 HETATM 137 O O12 . DM1 B 2 . ? -10.933 15.433 20.081 1.00 33.94 ? 7 DM1 B O12 1 HETATM 138 C C13 . DM1 B 2 . ? -10.372 17.499 21.633 1.00 10.36 ? 7 DM1 B C13 1 HETATM 139 O O13 . DM1 B 2 . ? -10.998 18.389 22.231 1.00 20.60 ? 7 DM1 B O13 1 HETATM 140 C C14 . DM1 B 2 . ? -8.980 17.530 21.137 1.00 4.91 ? 7 DM1 B C14 1 HETATM 141 C C15 . DM1 B 2 . ? -12.379 15.916 21.719 1.00 13.25 ? 7 DM1 B C15 1 HETATM 142 C C16 . DM1 B 2 . ? -13.039 14.568 21.874 1.00 12.01 ? 7 DM1 B C16 1 HETATM 143 C C17 . DM1 B 2 . ? -14.459 14.566 21.708 1.00 18.61 ? 7 DM1 B C17 1 HETATM 144 O O17 . DM1 B 2 . ? -15.065 15.753 21.505 1.00 20.29 ? 7 DM1 B O17 1 HETATM 145 C C18 . DM1 B 2 . ? -15.121 13.308 21.729 1.00 15.20 ? 7 DM1 B C18 1 HETATM 146 C C19 . DM1 B 2 . ? -16.573 13.333 21.559 1.00 10.58 ? 7 DM1 B C19 1 HETATM 147 O O19 . DM1 B 2 . ? -17.187 14.403 21.345 1.00 17.03 ? 7 DM1 B O19 1 HETATM 148 C C20 . DM1 B 2 . ? -17.227 11.977 21.564 1.00 16.51 ? 7 DM1 B C20 1 HETATM 149 C C21 . DM1 B 2 . ? -17.462 7.186 21.906 1.00 29.21 ? 7 DM1 B C21 1 HETATM 150 C "C1'" . DM1 B 2 . ? -9.524 11.643 21.084 1.00 32.49 ? 7 DM1 B "C1'" 1 HETATM 151 C "C2'" . DM1 B 2 . ? -9.485 11.088 19.670 1.00 43.28 ? 7 DM1 B "C2'" 1 HETATM 152 C "C3'" . DM1 B 2 . ? -9.047 12.210 18.710 1.00 41.62 ? 7 DM1 B "C3'" 1 HETATM 153 N "N3'" . DM1 B 2 . ? -9.179 11.725 17.312 1.00 55.77 ? 7 DM1 B "N3'" 1 HETATM 154 C "C4'" . DM1 B 2 . ? -7.607 12.486 19.099 1.00 52.51 ? 7 DM1 B "C4'" 1 HETATM 155 O "O4'" . DM1 B 2 . ? -6.734 11.503 18.582 1.00 56.38 ? 7 DM1 B "O4'" 1 HETATM 156 C "C5'" . DM1 B 2 . ? -7.520 13.005 20.497 1.00 54.71 ? 7 DM1 B "C5'" 1 HETATM 157 O "O5'" . DM1 B 2 . ? -8.348 12.345 21.468 1.00 57.65 ? 7 DM1 B "O5'" 1 HETATM 158 C "C6'" . DM1 B 2 . ? -6.060 12.968 21.089 1.00 42.32 ? 7 DM1 B "C6'" 1
spin
Assembly
Assembly ID: 110d_1
Assembly defined by
: Author
PDB ID
:
110d
Experimental method
: X-RAY DIFFRACTION
Resolution
: 1.9 Å
UniProt ID
: N/A
PubMed ID
:
15299505
Ligand 1
:
DM1
Ligand 2
:
DM1
Ligand 3
:
DNA
Download
mmCIF Format
PDB Format
Ligand ID
NUC pairing detail
Ligand Name
Synonyms
Formula
2D structure
DM1
N/A
Daunorubicin
1: Daunomycin; 2: (+)-daunomycin; 3: (8s-cis)-8-acetyl-10-((3-amino-2,3,6-trideoxy-alpha-l-lyxo-hexopyrannosyl)oxy)-7,8,9,10-tetrahydro-6,8,11-trihydroxy-1-methoxy-5,12-napthacenedione; 4: Acetyladriamycin; 5: (1s,3s)-3-acetyl-3,5,12-trihydroxy-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2,3,6-trideoxy-alpha-l-lyxo-hexopyranoside; 6: Leukaemomycin c; 7: Daunorubicinum;
"C27 H29 N O10"
DM1
N/A
Daunorubicin
1: Daunomycin; 2: (+)-daunomycin; 3: (8s-cis)-8-acetyl-10-((3-amino-2,3,6-trideoxy-alpha-l-lyxo-hexopyrannosyl)oxy)-7,8,9,10-tetrahydro-6,8,11-trihydroxy-1-methoxy-5,12-napthacenedione; 4: Acetyladriamycin; 5: (1s,3s)-3-acetyl-3,5,12-trihydroxy-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2,3,6-trideoxy-alpha-l-lyxo-hexopyranoside; 6: Leukaemomycin c; 7: Daunorubicinum;
"C27 H29 N O10"
DNA
A2:DNA A1:DNA
Deoxyribonucleic acid
N/A
"C11 H8 O4"
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)
