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Yang Lab
Function Annotation for BL2858626
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data_184d_1 # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num HETATM 1 O "O5'" . DG A 1 1 ? 16.813 10.330 8.939 1.00 32.72 ? 1 DG A "O5'" 1 HETATM 2 C "C5'" . DG A 1 1 ? 16.575 8.983 8.488 1.00 16.18 ? 1 DG A "C5'" 1 HETATM 3 C "C4'" . DG A 1 1 ? 15.066 8.816 8.376 1.00 16.59 ? 1 DG A "C4'" 1 HETATM 4 O "O4'" . DG A 1 1 ? 14.647 9.078 7.053 1.00 14.41 ? 1 DG A "O4'" 1 HETATM 5 C "C3'" . DG A 1 1 ? 14.647 7.320 8.603 1.00 14.14 ? 1 DG A "C3'" 1 HETATM 6 O "O3'" . DG A 1 1 ? 13.224 7.267 8.780 1.00 15.64 ? 1 DG A "O3'" 1 HETATM 7 C "C2'" . DG A 1 1 ? 15.075 6.774 7.222 1.00 11.24 ? 1 DG A "C2'" 1 HETATM 8 C "C1'" . DG A 1 1 ? 14.597 7.849 6.284 1.00 12.39 ? 1 DG A "C1'" 1 HETATM 9 N N9 . DG A 1 1 ? 15.530 7.973 5.151 1.00 14.86 ? 1 DG A N9 1 HETATM 10 C C8 . DG A 1 1 ? 16.908 7.831 5.188 1.00 13.49 ? 1 DG A C8 1 HETATM 11 N N7 . DG A 1 1 ? 17.469 7.997 4.038 1.00 8.05 ? 1 DG A N7 1 HETATM 12 C C5 . DG A 1 1 ? 16.431 8.324 3.176 1.00 11.70 ? 1 DG A C5 1 HETATM 13 C C6 . DG A 1 1 ? 16.415 8.674 1.802 1.00 10.75 ? 1 DG A C6 1 HETATM 14 O O6 . DG A 1 1 ? 17.356 8.733 1.016 1.00 14.89 ? 1 DG A O6 1 HETATM 15 N N1 . DG A 1 1 ? 15.156 8.906 1.281 1.00 6.51 ? 1 DG A N1 1 HETATM 16 C C2 . DG A 1 1 ? 14.048 8.840 2.048 1.00 2.33 ? 1 DG A C2 1 HETATM 17 N N2 . DG A 1 1 ? 12.908 9.107 1.398 1.00 9.98 ? 1 DG A N2 1 HETATM 18 N N3 . DG A 1 1 ? 14.021 8.561 3.351 1.00 9.55 ? 1 DG A N3 1 HETATM 19 C C4 . DG A 1 1 ? 15.228 8.312 3.851 1.00 11.21 ? 1 DG A C4 1 HETATM 20 P P . DC A 1 2 ? 12.424 5.937 9.143 1.00 16.91 ? 2 DC A P 1 HETATM 21 O OP1 . DC A 1 2 ? 11.224 6.329 9.964 1.00 19.72 ? 2 DC A OP1 1 HETATM 22 O OP2 . DC A 1 2 ? 13.435 5.136 9.854 1.00 17.07 ? 2 DC A OP2 1 HETATM 23 O "O5'" . DC A 1 2 ? 11.951 5.355 7.753 1.00 15.08 ? 2 DC A "O5'" 1 HETATM 24 C "C5'" . DC A 1 2 ? 10.913 6.079 7.007 1.00 11.74 ? 2 DC A "C5'" 1 HETATM 25 C "C4'" . DC A 1 2 ? 10.805 5.349 5.694 1.00 16.46 ? 2 DC A "C4'" 1 HETATM 26 O "O4'" . DC A 1 2 ? 11.875 5.711 4.842 1.00 20.30 ? 2 DC A "O4'" 1 HETATM 27 C "C3'" . DC A 1 2 ? 10.794 3.829 5.782 1.00 11.80 ? 2 DC A "C3'" 1 HETATM 28 O "O3'" . DC A 1 2 ? 9.569 3.253 5.300 1.00 15.82 ? 2 DC A "O3'" 1 HETATM 29 C "C2'" . DC A 1 2 ? 12.005 3.414 4.942 1.00 12.26 ? 2 DC A "C2'" 1 HETATM 30 C "C1'" . DC A 1 2 ? 12.141 4.560 3.970 1.00 12.84 ? 2 DC A "C1'" 1 HETATM 31 N N1 . DC A 1 2 ? 13.546 4.696 3.510 1.00 11.15 ? 2 DC A N1 1 HETATM 32 C C2 . DC A 1 2 ? 13.717 5.112 2.192 1.00 2.14 ? 2 DC A C2 1 HETATM 33 O O2 . DC A 1 2 ? 12.787 5.320 1.449 1.00 12.30 ? 2 DC A O2 1 HETATM 34 N N3 . DC A 1 2 ? 15.007 5.260 1.763 1.00 13.46 ? 2 DC A N3 1 HETATM 35 C C4 . DC A 1 2 ? 16.077 5.029 2.560 1.00 6.62 ? 2 DC A C4 1 HETATM 36 N N4 . DC A 1 2 ? 17.309 5.213 2.048 1.00 10.76 ? 2 DC A N4 1 HETATM 37 C C5 . DC A 1 2 ? 15.881 4.595 3.897 1.00 4.95 ? 2 DC A C5 1 HETATM 38 C C6 . DC A 1 2 ? 14.604 4.465 4.323 1.00 6.27 ? 2 DC A C6 1 HETATM 39 P P . DA A 1 3 ? 8.677 2.304 6.289 1.00 12.01 ? 3 DA A P 1 HETATM 40 O OP1 . DA A 1 3 ? 8.796 2.761 7.709 1.00 14.40 ? 3 DA A OP1 1 HETATM 41 O OP2 . DA A 1 3 ? 9.328 0.997 6.070 1.00 7.59 ? 3 DA A OP2 1 HETATM 42 O "O5'" . DA A 1 3 ? 7.215 2.476 5.750 1.00 16.58 ? 3 DA A "O5'" 1 HETATM 43 C "C5'" . DA A 1 3 ? 6.677 3.794 5.490 1.00 12.47 ? 3 DA A "C5'" 1 HETATM 44 C "C4'" . DA A 1 3 ? 5.819 3.687 4.274 1.00 3.49 ? 3 DA A "C4'" 1 HETATM 45 O "O4'" . DA A 1 3 ? 6.456 3.847 3.052 1.00 9.42 ? 3 DA A "O4'" 1 HETATM 46 C "C3'" . DA A 1 3 ? 4.878 2.499 4.141 1.00 7.59 ? 3 DA A "C3'" 1 HETATM 47 O "O3'" . DA A 1 3 ? 3.621 2.998 3.624 1.00 13.09 ? 3 DA A "O3'" 1 HETATM 48 C "C2'" . DA A 1 3 ? 5.560 1.698 3.015 1.00 2.00 ? 3 DA A "C2'" 1 HETATM 49 C "C1'" . DA A 1 3 ? 6.083 2.779 2.146 1.00 7.49 ? 3 DA A "C1'" 1 HETATM 50 N N9 . DA A 1 3 ? 7.321 2.381 1.427 1.00 2.98 ? 3 DA A N9 1 HETATM 51 C C8 . DA A 1 3 ? 8.612 2.422 1.888 1.00 8.98 ? 3 DA A C8 1 HETATM 52 N N7 . DA A 1 3 ? 9.488 2.108 0.962 1.00 10.41 ? 3 DA A N7 1 HETATM 53 C C5 . DA A 1 3 ? 8.729 1.858 -0.173 1.00 6.55 ? 3 DA A C5 1 HETATM 54 C C6 . DA A 1 3 ? 9.076 1.466 -1.481 1.00 3.85 ? 3 DA A C6 1 HETATM 55 N N6 . DA A 1 3 ? 10.305 1.259 -1.885 1.00 8.67 ? 3 DA A N6 1 HETATM 56 N N1 . DA A 1 3 ? 8.024 1.336 -2.367 1.00 7.68 ? 3 DA A N1 1 HETATM 57 C C2 . DA A 1 3 ? 6.749 1.573 -1.963 1.00 8.77 ? 3 DA A C2 1 HETATM 58 N N3 . DA A 1 3 ? 6.357 1.965 -0.748 1.00 3.15 ? 3 DA A N3 1 HETATM 59 C C4 . DA A 1 3 ? 7.378 2.060 0.102 1.00 7.29 ? 3 DA A C4 1 HETATM 60 P P . DT A 1 4 ? 2.184 2.428 4.085 1.00 14.48 ? 4 DT A P 1 HETATM 61 O OP1 . DT A 1 4 ? 2.119 0.944 3.890 1.00 18.06 ? 4 DT A OP1 1 HETATM 62 O OP2 . DT A 1 4 ? 1.320 3.176 3.103 1.00 18.59 ? 4 DT A OP2 1 HETATM 63 O "O5'" . DT A 1 4 ? 1.989 2.891 5.573 1.00 11.83 ? 4 DT A "O5'" 1 HETATM 64 C "C5'" . DT A 1 4 ? 1.576 4.269 5.811 1.00 13.60 ? 4 DT A "C5'" 1 HETATM 65 C "C4'" . DT A 1 4 ? 1.802 4.542 7.263 1.00 14.27 ? 4 DT A "C4'" 1 HETATM 66 O "O4'" . DT A 1 4 ? 1.103 3.598 8.042 1.00 11.59 ? 4 DT A "O4'" 1 HETATM 67 C "C3'" . DT A 1 4 ? 3.236 4.566 7.745 1.00 20.07 ? 4 DT A "C3'" 1 HETATM 68 O "O3'" . DT A 1 4 ? 3.511 5.492 8.802 1.00 15.57 ? 4 DT A "O3'" 1 HETATM 69 C "C2'" . DT A 1 4 ? 3.398 3.123 8.269 1.00 13.37 ? 4 DT A "C2'" 1 HETATM 70 C "C1'" . DT A 1 4 ? 2.013 2.963 8.941 1.00 10.60 ? 4 DT A "C1'" 1 HETATM 71 N N1 . DT A 1 4 ? 1.829 1.496 9.041 1.00 12.23 ? 4 DT A N1 1 HETATM 72 C C2 . DT A 1 4 ? 1.725 0.974 10.305 1.00 12.70 ? 4 DT A C2 1 HETATM 73 O O2 . DT A 1 4 ? 1.775 1.692 11.308 1.00 8.80 ? 4 DT A O2 1 HETATM 74 N N3 . DT A 1 4 ? 1.603 -0.380 10.412 1.00 10.51 ? 4 DT A N3 1 HETATM 75 C C4 . DT A 1 4 ? 1.619 -1.199 9.338 1.00 10.02 ? 4 DT A C4 1 HETATM 76 O O4 . DT A 1 4 ? 1.516 -2.446 9.550 1.00 18.52 ? 4 DT A O4 1 HETATM 77 C C5 . DT A 1 4 ? 1.734 -0.647 8.037 1.00 9.26 ? 4 DT A C5 1 HETATM 78 C C7 . DT A 1 4 ? 1.750 -1.532 6.837 1.00 10.82 ? 4 DT A C7 1 HETATM 79 C C6 . DT A 1 4 ? 1.844 0.689 7.933 1.00 7.29 ? 4 DT A C6 1 HETATM 80 P P . DG A 1 5 ? 3.761 7.053 8.551 1.00 17.29 ? 5 DG A P 1 HETATM 81 O OP1 . DG A 1 5 ? 3.558 7.671 9.852 1.00 17.12 ? 5 DG A OP1 1 HETATM 82 O OP2 . DG A 1 5 ? 2.826 7.570 7.458 1.00 13.05 ? 5 DG A OP2 1 HETATM 83 O "O5'" . DG A 1 5 ? 5.238 7.113 7.994 1.00 14.21 ? 5 DG A "O5'" 1 HETATM 84 C "C5'" . DG A 1 5 ? 6.315 6.578 8.812 1.00 10.54 ? 5 DG A "C5'" 1 HETATM 85 C "C4'" . DG A 1 5 ? 7.571 7.053 8.150 1.00 11.09 ? 5 DG A "C4'" 1 HETATM 86 O "O4'" . DG A 1 5 ? 7.700 6.596 6.825 1.00 7.21 ? 5 DG A "O4'" 1 HETATM 87 C "C3'" . DG A 1 5 ? 7.695 8.603 8.074 1.00 10.73 ? 5 DG A "C3'" 1 HETATM 88 O "O3'" . DG A 1 5 ? 9.071 8.929 8.174 1.00 19.14 ? 5 DG A "O3'" 1 HETATM 89 C "C2'" . DG A 1 5 ? 7.179 8.906 6.664 1.00 6.50 ? 5 DG A "C2'" 1 HETATM 90 C "C1'" . DG A 1 5 ? 7.666 7.682 5.909 1.00 11.00 ? 5 DG A "C1'" 1 HETATM 91 N N9 . DG A 1 5 ? 6.803 7.374 4.764 1.00 8.02 ? 5 DG A N9 1 HETATM 92 C C8 . DG A 1 5 ? 5.423 7.392 4.703 1.00 3.41 ? 5 DG A C8 1 HETATM 93 N N7 . DG A 1 5 ? 4.950 7.077 3.549 1.00 8.88 ? 5 DG A N7 1 HETATM 94 C C5 . DG A 1 5 ? 6.076 6.869 2.760 1.00 9.70 ? 5 DG A C5 1 HETATM 95 C C6 . DG A 1 5 ? 6.216 6.477 1.396 1.00 5.19 ? 5 DG A C6 1 HETATM 96 O O6 . DG A 1 5 ? 5.353 6.240 0.567 1.00 11.30 ? 5 DG A O6 1 HETATM 97 N N1 . DG A 1 5 ? 7.515 6.388 0.991 1.00 8.37 ? 5 DG A N1 1 HETATM 98 C C2 . DG A 1 5 ? 8.571 6.554 1.832 1.00 3.02 ? 5 DG A C2 1 HETATM 99 N N2 . DG A 1 5 ? 9.771 6.394 1.247 1.00 12.04 ? 5 DG A N2 1 HETATM 100 N N3 . DG A 1 5 ? 8.497 6.887 3.101 1.00 3.44 ? 5 DG A N3 1 HETATM 101 C C4 . DG A 1 5 ? 7.209 7.023 3.510 1.00 6.19 ? 5 DG A C4 1 HETATM 102 P P . DC A 1 6 ? 9.614 10.247 8.873 1.00 18.75 ? 6 DC A P 1 HETATM 103 O OP1 . DC A 1 6 ? 10.294 9.927 10.154 1.00 13.66 ? 6 DC A OP1 1 HETATM 104 O OP2 . DC A 1 6 ? 8.371 11.067 9.060 1.00 17.74 ? 6 DC A OP2 1 HETATM 105 O "O5'" . DC A 1 6 ? 10.618 10.817 7.779 1.00 19.73 ? 6 DC A "O5'" 1 HETATM 106 C "C5'" . DC A 1 6 ? 11.418 9.903 7.002 1.00 17.52 ? 6 DC A "C5'" 1 HETATM 107 C "C4'" . DC A 1 6 ? 11.424 10.419 5.607 1.00 9.85 ? 6 DC A "C4'" 1 HETATM 108 O "O4'" . DC A 1 6 ? 10.375 9.897 4.844 1.00 13.31 ? 6 DC A "O4'" 1 HETATM 109 C "C3'" . DC A 1 6 ? 11.505 11.898 5.336 1.00 21.09 ? 6 DC A "C3'" 1 HETATM 110 O "O3'" . DC A 1 6 ? 12.728 12.296 4.701 1.00 18.08 ? 6 DC A "O3'" 1 HETATM 111 C "C2'" . DC A 1 6 ? 10.301 12.165 4.389 1.00 17.67 ? 6 DC A "C2'" 1 HETATM 112 C "C1'" . DC A 1 6 ? 10.195 10.805 3.717 1.00 19.77 ? 6 DC A "C1'" 1 HETATM 113 N N1 . DC A 1 6 ? 8.864 10.568 3.132 1.00 17.95 ? 6 DC A N1 1 HETATM 114 C C2 . DC A 1 6 ? 8.832 9.980 1.880 1.00 4.13 ? 6 DC A C2 1 HETATM 115 O O2 . DC A 1 6 ? 9.884 9.731 1.271 1.00 12.85 ? 6 DC A O2 1 HETATM 116 N N3 . DC A 1 6 ? 7.616 9.713 1.323 1.00 11.52 ? 6 DC A N3 1 HETATM 117 C C4 . DC A 1 6 ? 6.459 10.022 1.973 1.00 5.34 ? 6 DC A C4 1 HETATM 118 N N4 . DC A 1 6 ? 5.288 9.760 1.359 1.00 10.23 ? 6 DC A N4 1 HETATM 119 C C5 . DC A 1 6 ? 6.495 10.592 3.266 1.00 8.17 ? 6 DC A C5 1 HETATM 120 C C6 . DC A 1 6 ? 7.702 10.865 3.797 1.00 12.80 ? 6 DC A C6 1 HETATM 121 P P . DT A 1 7 ? 13.618 13.554 5.256 1.00 24.85 ? 7 DT A P 1 HETATM 122 O OP1 . DT A 1 7 ? 13.483 13.869 6.681 1.00 16.00 ? 7 DT A OP1 1 HETATM 123 O OP2 . DT A 1 7 ? 13.167 14.635 4.328 1.00 17.41 ? 7 DT A OP2 1 HETATM 124 O "O5'" . DT A 1 7 ? 15.091 13.026 4.937 1.00 16.87 ? 7 DT A "O5'" 1 HETATM 125 C "C5'" . DT A 1 7 ? 15.647 11.969 5.794 1.00 13.37 ? 7 DT A "C5'" 1 HETATM 126 C "C4'" . DT A 1 7 ? 16.892 11.577 4.976 1.00 16.72 ? 7 DT A "C4'" 1 HETATM 127 O "O4'" . DT A 1 7 ? 16.462 11.334 3.670 1.00 12.25 ? 7 DT A "O4'" 1 HETATM 128 C "C3'" . DT A 1 7 ? 17.944 12.670 4.898 1.00 21.47 ? 7 DT A "C3'" 1 HETATM 129 O "O3'" . DT A 1 7 ? 19.147 12.361 5.573 1.00 23.32 ? 7 DT A "O3'" 1 HETATM 130 C "C2'" . DT A 1 7 ? 18.059 13.032 3.444 1.00 16.71 ? 7 DT A "C2'" 1 HETATM 131 C "C1'" . DT A 1 7 ? 17.410 11.886 2.723 1.00 16.07 ? 7 DT A "C1'" 1 HETATM 132 N N1 . DT A 1 7 ? 16.590 12.343 1.586 1.00 16.36 ? 7 DT A N1 1 HETATM 133 C C2 . DT A 1 7 ? 17.253 12.634 0.404 1.00 21.91 ? 7 DT A C2 1 HETATM 134 O O2 . DT A 1 7 ? 18.473 12.557 0.336 1.00 27.22 ? 7 DT A O2 1 HETATM 135 N N3 . DT A 1 7 ? 16.491 13.038 -0.660 1.00 20.90 ? 7 DT A N3 1 HETATM 136 C C4 . DT A 1 7 ? 15.133 13.121 -0.587 1.00 14.21 ? 7 DT A C4 1 HETATM 137 O O4 . DT A 1 7 ? 14.537 13.495 -1.625 1.00 19.87 ? 7 DT A O4 1 HETATM 138 C C5 . DT A 1 7 ? 14.478 12.782 0.631 1.00 16.22 ? 7 DT A C5 1 HETATM 139 C C7 . DT A 1 7 ? 12.987 12.871 0.765 1.00 16.93 ? 7 DT A C7 1 HETATM 140 C C6 . DT A 1 7 ? 15.237 12.402 1.666 1.00 14.18 ? 7 DT A C6 1 HETATM 141 MG MG . MG A 2 . ? 0.000 0.000 0.000 0.25 47.87 ? 8 MG A MG 1 HETATM 142 MG MG . MG A 2 . ? 11.260 7.956 12.178 0.50 17.80 ? 9 MG A MG 1 HETATM 1 O "O5'" . DG B 1 1 ? 5.707 10.330 -8.939 1.00 32.72 ? 1 DG B "O5'" 1 HETATM 2 C "C5'" . DG B 1 1 ? 5.945 8.983 -8.488 1.00 16.18 ? 1 DG B "C5'" 1 HETATM 3 C "C4'" . DG B 1 1 ? 7.454 8.816 -8.376 1.00 16.59 ? 1 DG B "C4'" 1 HETATM 4 O "O4'" . DG B 1 1 ? 7.873 9.078 -7.053 1.00 14.41 ? 1 DG B "O4'" 1 HETATM 5 C "C3'" . DG B 1 1 ? 7.873 7.320 -8.603 1.00 14.14 ? 1 DG B "C3'" 1 HETATM 6 O "O3'" . DG B 1 1 ? 9.296 7.267 -8.780 1.00 15.64 ? 1 DG B "O3'" 1 HETATM 7 C "C2'" . DG B 1 1 ? 7.445 6.774 -7.222 1.00 11.24 ? 1 DG B "C2'" 1 HETATM 8 C "C1'" . DG B 1 1 ? 7.923 7.849 -6.284 1.00 12.39 ? 1 DG B "C1'" 1 HETATM 9 N N9 . DG B 1 1 ? 6.990 7.973 -5.151 1.00 14.86 ? 1 DG B N9 1 HETATM 10 C C8 . DG B 1 1 ? 5.612 7.831 -5.188 1.00 13.49 ? 1 DG B C8 1 HETATM 11 N N7 . DG B 1 1 ? 5.051 7.997 -4.038 1.00 8.05 ? 1 DG B N7 1 HETATM 12 C C5 . DG B 1 1 ? 6.089 8.324 -3.176 1.00 11.70 ? 1 DG B C5 1 HETATM 13 C C6 . DG B 1 1 ? 6.105 8.674 -1.802 1.00 10.75 ? 1 DG B C6 1 HETATM 14 O O6 . DG B 1 1 ? 5.164 8.733 -1.016 1.00 14.89 ? 1 DG B O6 1 HETATM 15 N N1 . DG B 1 1 ? 7.364 8.906 -1.281 1.00 6.51 ? 1 DG B N1 1 HETATM 16 C C2 . DG B 1 1 ? 8.472 8.840 -2.048 1.00 2.33 ? 1 DG B C2 1 HETATM 17 N N2 . DG B 1 1 ? 9.612 9.107 -1.398 1.00 9.98 ? 1 DG B N2 1 HETATM 18 N N3 . DG B 1 1 ? 8.499 8.561 -3.351 1.00 9.55 ? 1 DG B N3 1 HETATM 19 C C4 . DG B 1 1 ? 7.292 8.312 -3.851 1.00 11.21 ? 1 DG B C4 1 HETATM 20 P P . DC B 1 2 ? 10.096 5.937 -9.143 1.00 16.91 ? 2 DC B P 1 HETATM 21 O OP1 . DC B 1 2 ? 11.296 6.329 -9.964 1.00 19.72 ? 2 DC B OP1 1 HETATM 22 O OP2 . DC B 1 2 ? 9.085 5.136 -9.854 1.00 17.07 ? 2 DC B OP2 1 HETATM 23 O "O5'" . DC B 1 2 ? 10.569 5.355 -7.753 1.00 15.08 ? 2 DC B "O5'" 1 HETATM 24 C "C5'" . DC B 1 2 ? 11.607 6.079 -7.007 1.00 11.74 ? 2 DC B "C5'" 1 HETATM 25 C "C4'" . DC B 1 2 ? 11.715 5.349 -5.694 1.00 16.46 ? 2 DC B "C4'" 1 HETATM 26 O "O4'" . DC B 1 2 ? 10.645 5.711 -4.842 1.00 20.30 ? 2 DC B "O4'" 1 HETATM 27 C "C3'" . DC B 1 2 ? 11.726 3.829 -5.782 1.00 11.80 ? 2 DC B "C3'" 1 HETATM 28 O "O3'" . DC B 1 2 ? 12.951 3.253 -5.300 1.00 15.82 ? 2 DC B "O3'" 1 HETATM 29 C "C2'" . DC B 1 2 ? 10.515 3.414 -4.942 1.00 12.26 ? 2 DC B "C2'" 1 HETATM 30 C "C1'" . DC B 1 2 ? 10.379 4.560 -3.970 1.00 12.84 ? 2 DC B "C1'" 1 HETATM 31 N N1 . DC B 1 2 ? 8.974 4.696 -3.510 1.00 11.15 ? 2 DC B N1 1 HETATM 32 C C2 . DC B 1 2 ? 8.803 5.112 -2.192 1.00 2.14 ? 2 DC B C2 1 HETATM 33 O O2 . DC B 1 2 ? 9.733 5.320 -1.449 1.00 12.30 ? 2 DC B O2 1 HETATM 34 N N3 . DC B 1 2 ? 7.513 5.260 -1.763 1.00 13.46 ? 2 DC B N3 1 HETATM 35 C C4 . DC B 1 2 ? 6.443 5.029 -2.560 1.00 6.62 ? 2 DC B C4 1 HETATM 36 N N4 . DC B 1 2 ? 5.211 5.213 -2.048 1.00 10.76 ? 2 DC B N4 1 HETATM 37 C C5 . DC B 1 2 ? 6.639 4.595 -3.897 1.00 4.95 ? 2 DC B C5 1 HETATM 38 C C6 . DC B 1 2 ? 7.916 4.465 -4.323 1.00 6.27 ? 2 DC B C6 1 HETATM 39 P P . DA B 1 3 ? 13.843 2.304 -6.289 1.00 12.01 ? 3 DA B P 1 HETATM 40 O OP1 . DA B 1 3 ? 13.724 2.761 -7.709 1.00 14.40 ? 3 DA B OP1 1 HETATM 41 O OP2 . DA B 1 3 ? 13.192 0.997 -6.070 1.00 7.59 ? 3 DA B OP2 1 HETATM 42 O "O5'" . DA B 1 3 ? 15.305 2.476 -5.750 1.00 16.58 ? 3 DA B "O5'" 1 HETATM 43 C "C5'" . DA B 1 3 ? 15.843 3.794 -5.490 1.00 12.47 ? 3 DA B "C5'" 1 HETATM 44 C "C4'" . DA B 1 3 ? 16.701 3.687 -4.274 1.00 3.49 ? 3 DA B "C4'" 1 HETATM 45 O "O4'" . DA B 1 3 ? 16.064 3.847 -3.052 1.00 9.42 ? 3 DA B "O4'" 1 HETATM 46 C "C3'" . DA B 1 3 ? 17.642 2.499 -4.141 1.00 7.59 ? 3 DA B "C3'" 1 HETATM 47 O "O3'" . DA B 1 3 ? 18.899 2.998 -3.624 1.00 13.09 ? 3 DA B "O3'" 1 HETATM 48 C "C2'" . DA B 1 3 ? 16.960 1.698 -3.015 1.00 2.00 ? 3 DA B "C2'" 1 HETATM 49 C "C1'" . DA B 1 3 ? 16.437 2.779 -2.146 1.00 7.49 ? 3 DA B "C1'" 1 HETATM 50 N N9 . DA B 1 3 ? 15.199 2.381 -1.427 1.00 2.98 ? 3 DA B N9 1 HETATM 51 C C8 . DA B 1 3 ? 13.908 2.422 -1.888 1.00 8.98 ? 3 DA B C8 1 HETATM 52 N N7 . DA B 1 3 ? 13.032 2.108 -0.962 1.00 10.41 ? 3 DA B N7 1 HETATM 53 C C5 . DA B 1 3 ? 13.791 1.858 0.173 1.00 6.55 ? 3 DA B C5 1 HETATM 54 C C6 . DA B 1 3 ? 13.444 1.466 1.481 1.00 3.85 ? 3 DA B C6 1 HETATM 55 N N6 . DA B 1 3 ? 12.215 1.259 1.885 1.00 8.67 ? 3 DA B N6 1 HETATM 56 N N1 . DA B 1 3 ? 14.496 1.336 2.367 1.00 7.68 ? 3 DA B N1 1 HETATM 57 C C2 . DA B 1 3 ? 15.771 1.573 1.963 1.00 8.77 ? 3 DA B C2 1 HETATM 58 N N3 . DA B 1 3 ? 16.163 1.965 0.748 1.00 3.15 ? 3 DA B N3 1 HETATM 59 C C4 . DA B 1 3 ? 15.142 2.060 -0.102 1.00 7.29 ? 3 DA B C4 1 HETATM 60 P P . DT B 1 4 ? 20.336 2.428 -4.085 1.00 14.48 ? 4 DT B P 1 HETATM 61 O OP1 . DT B 1 4 ? 20.401 0.944 -3.890 1.00 18.06 ? 4 DT B OP1 1 HETATM 62 O OP2 . DT B 1 4 ? 21.200 3.176 -3.103 1.00 18.59 ? 4 DT B OP2 1 HETATM 63 O "O5'" . DT B 1 4 ? 20.531 2.891 -5.573 1.00 11.83 ? 4 DT B "O5'" 1 HETATM 64 C "C5'" . DT B 1 4 ? 20.944 4.269 -5.811 1.00 13.60 ? 4 DT B "C5'" 1 HETATM 65 C "C4'" . DT B 1 4 ? 20.718 4.542 -7.263 1.00 14.27 ? 4 DT B "C4'" 1 HETATM 66 O "O4'" . DT B 1 4 ? 21.417 3.598 -8.042 1.00 11.59 ? 4 DT B "O4'" 1 HETATM 67 C "C3'" . DT B 1 4 ? 19.284 4.566 -7.745 1.00 20.07 ? 4 DT B "C3'" 1 HETATM 68 O "O3'" . DT B 1 4 ? 19.009 5.492 -8.802 1.00 15.57 ? 4 DT B "O3'" 1 HETATM 69 C "C2'" . DT B 1 4 ? 19.122 3.123 -8.269 1.00 13.37 ? 4 DT B "C2'" 1 HETATM 70 C "C1'" . DT B 1 4 ? 20.507 2.963 -8.941 1.00 10.60 ? 4 DT B "C1'" 1 HETATM 71 N N1 . DT B 1 4 ? 20.691 1.496 -9.041 1.00 12.23 ? 4 DT B N1 1 HETATM 72 C C2 . DT B 1 4 ? 20.795 0.974 -10.305 1.00 12.70 ? 4 DT B C2 1 HETATM 73 O O2 . DT B 1 4 ? 20.745 1.692 -11.308 1.00 8.80 ? 4 DT B O2 1 HETATM 74 N N3 . DT B 1 4 ? 20.917 -0.380 -10.412 1.00 10.51 ? 4 DT B N3 1 HETATM 75 C C4 . DT B 1 4 ? 20.901 -1.199 -9.338 1.00 10.02 ? 4 DT B C4 1 HETATM 76 O O4 . DT B 1 4 ? 21.004 -2.446 -9.550 1.00 18.52 ? 4 DT B O4 1 HETATM 77 C C5 . DT B 1 4 ? 20.786 -0.647 -8.037 1.00 9.26 ? 4 DT B C5 1 HETATM 78 C C7 . DT B 1 4 ? 20.770 -1.532 -6.837 1.00 10.82 ? 4 DT B C7 1 HETATM 79 C C6 . DT B 1 4 ? 20.676 0.689 -7.933 1.00 7.29 ? 4 DT B C6 1 HETATM 80 P P . DG B 1 5 ? 18.759 7.053 -8.551 1.00 17.29 ? 5 DG B P 1 HETATM 81 O OP1 . DG B 1 5 ? 18.962 7.671 -9.852 1.00 17.12 ? 5 DG B OP1 1 HETATM 82 O OP2 . DG B 1 5 ? 19.694 7.570 -7.458 1.00 13.05 ? 5 DG B OP2 1 HETATM 83 O "O5'" . DG B 1 5 ? 17.282 7.113 -7.994 1.00 14.21 ? 5 DG B "O5'" 1 HETATM 84 C "C5'" . DG B 1 5 ? 16.205 6.578 -8.812 1.00 10.54 ? 5 DG B "C5'" 1 HETATM 85 C "C4'" . DG B 1 5 ? 14.949 7.053 -8.150 1.00 11.09 ? 5 DG B "C4'" 1 HETATM 86 O "O4'" . DG B 1 5 ? 14.820 6.596 -6.825 1.00 7.21 ? 5 DG B "O4'" 1 HETATM 87 C "C3'" . DG B 1 5 ? 14.825 8.603 -8.074 1.00 10.73 ? 5 DG B "C3'" 1 HETATM 88 O "O3'" . DG B 1 5 ? 13.449 8.929 -8.174 1.00 19.14 ? 5 DG B "O3'" 1 HETATM 89 C "C2'" . DG B 1 5 ? 15.341 8.906 -6.664 1.00 6.50 ? 5 DG B "C2'" 1 HETATM 90 C "C1'" . DG B 1 5 ? 14.854 7.682 -5.909 1.00 11.00 ? 5 DG B "C1'" 1 HETATM 91 N N9 . DG B 1 5 ? 15.717 7.374 -4.764 1.00 8.02 ? 5 DG B N9 1 HETATM 92 C C8 . DG B 1 5 ? 17.097 7.392 -4.703 1.00 3.41 ? 5 DG B C8 1 HETATM 93 N N7 . DG B 1 5 ? 17.570 7.077 -3.549 1.00 8.88 ? 5 DG B N7 1 HETATM 94 C C5 . DG B 1 5 ? 16.444 6.869 -2.760 1.00 9.70 ? 5 DG B C5 1 HETATM 95 C C6 . DG B 1 5 ? 16.304 6.477 -1.396 1.00 5.19 ? 5 DG B C6 1 HETATM 96 O O6 . DG B 1 5 ? 17.167 6.240 -0.567 1.00 11.30 ? 5 DG B O6 1 HETATM 97 N N1 . DG B 1 5 ? 15.005 6.388 -0.991 1.00 8.37 ? 5 DG B N1 1 HETATM 98 C C2 . DG B 1 5 ? 13.949 6.554 -1.832 1.00 3.02 ? 5 DG B C2 1 HETATM 99 N N2 . DG B 1 5 ? 12.749 6.394 -1.247 1.00 12.04 ? 5 DG B N2 1 HETATM 100 N N3 . DG B 1 5 ? 14.023 6.887 -3.101 1.00 3.44 ? 5 DG B N3 1 HETATM 101 C C4 . DG B 1 5 ? 15.311 7.023 -3.510 1.00 6.19 ? 5 DG B C4 1 HETATM 102 P P . DC B 1 6 ? 12.906 10.247 -8.873 1.00 18.75 ? 6 DC B P 1 HETATM 103 O OP1 . DC B 1 6 ? 12.226 9.927 -10.154 1.00 13.66 ? 6 DC B OP1 1 HETATM 104 O OP2 . DC B 1 6 ? 14.149 11.067 -9.060 1.00 17.74 ? 6 DC B OP2 1 HETATM 105 O "O5'" . DC B 1 6 ? 11.902 10.817 -7.779 1.00 19.73 ? 6 DC B "O5'" 1 HETATM 106 C "C5'" . DC B 1 6 ? 11.102 9.903 -7.002 1.00 17.52 ? 6 DC B "C5'" 1 HETATM 107 C "C4'" . DC B 1 6 ? 11.096 10.419 -5.607 1.00 9.85 ? 6 DC B "C4'" 1 HETATM 108 O "O4'" . DC B 1 6 ? 12.145 9.897 -4.844 1.00 13.31 ? 6 DC B "O4'" 1 HETATM 109 C "C3'" . DC B 1 6 ? 11.015 11.898 -5.336 1.00 21.09 ? 6 DC B "C3'" 1 HETATM 110 O "O3'" . DC B 1 6 ? 9.792 12.296 -4.701 1.00 18.08 ? 6 DC B "O3'" 1 HETATM 111 C "C2'" . DC B 1 6 ? 12.219 12.165 -4.389 1.00 17.67 ? 6 DC B "C2'" 1 HETATM 112 C "C1'" . DC B 1 6 ? 12.325 10.805 -3.717 1.00 19.77 ? 6 DC B "C1'" 1 HETATM 113 N N1 . DC B 1 6 ? 13.656 10.568 -3.132 1.00 17.95 ? 6 DC B N1 1 HETATM 114 C C2 . DC B 1 6 ? 13.688 9.980 -1.880 1.00 4.13 ? 6 DC B C2 1 HETATM 115 O O2 . DC B 1 6 ? 12.636 9.731 -1.271 1.00 12.85 ? 6 DC B O2 1 HETATM 116 N N3 . DC B 1 6 ? 14.904 9.713 -1.323 1.00 11.52 ? 6 DC B N3 1 HETATM 117 C C4 . DC B 1 6 ? 16.061 10.022 -1.973 1.00 5.34 ? 6 DC B C4 1 HETATM 118 N N4 . DC B 1 6 ? 17.232 9.760 -1.359 1.00 10.23 ? 6 DC B N4 1 HETATM 119 C C5 . DC B 1 6 ? 16.025 10.592 -3.266 1.00 8.17 ? 6 DC B C5 1 HETATM 120 C C6 . DC B 1 6 ? 14.818 10.865 -3.797 1.00 12.80 ? 6 DC B C6 1 HETATM 121 P P . DT B 1 7 ? 8.902 13.554 -5.256 1.00 24.85 ? 7 DT B P 1 HETATM 122 O OP1 . DT B 1 7 ? 9.037 13.869 -6.681 1.00 16.00 ? 7 DT B OP1 1 HETATM 123 O OP2 . DT B 1 7 ? 9.353 14.635 -4.328 1.00 17.41 ? 7 DT B OP2 1 HETATM 124 O "O5'" . DT B 1 7 ? 7.429 13.026 -4.937 1.00 16.87 ? 7 DT B "O5'" 1 HETATM 125 C "C5'" . DT B 1 7 ? 6.873 11.969 -5.794 1.00 13.37 ? 7 DT B "C5'" 1 HETATM 126 C "C4'" . DT B 1 7 ? 5.628 11.577 -4.976 1.00 16.72 ? 7 DT B "C4'" 1 HETATM 127 O "O4'" . DT B 1 7 ? 6.058 11.334 -3.670 1.00 12.25 ? 7 DT B "O4'" 1 HETATM 128 C "C3'" . DT B 1 7 ? 4.576 12.670 -4.898 1.00 21.47 ? 7 DT B "C3'" 1 HETATM 129 O "O3'" . DT B 1 7 ? 3.373 12.361 -5.573 1.00 23.32 ? 7 DT B "O3'" 1 HETATM 130 C "C2'" . DT B 1 7 ? 4.461 13.032 -3.444 1.00 16.71 ? 7 DT B "C2'" 1 HETATM 131 C "C1'" . DT B 1 7 ? 5.110 11.886 -2.723 1.00 16.07 ? 7 DT B "C1'" 1 HETATM 132 N N1 . DT B 1 7 ? 5.930 12.343 -1.586 1.00 16.36 ? 7 DT B N1 1 HETATM 133 C C2 . DT B 1 7 ? 5.267 12.634 -0.404 1.00 21.91 ? 7 DT B C2 1 HETATM 134 O O2 . DT B 1 7 ? 4.047 12.557 -0.336 1.00 27.22 ? 7 DT B O2 1 HETATM 135 N N3 . DT B 1 7 ? 6.029 13.038 0.660 1.00 20.90 ? 7 DT B N3 1 HETATM 136 C C4 . DT B 1 7 ? 7.387 13.121 0.587 1.00 14.21 ? 7 DT B C4 1 HETATM 137 O O4 . DT B 1 7 ? 7.983 13.495 1.625 1.00 19.87 ? 7 DT B O4 1 HETATM 138 C C5 . DT B 1 7 ? 8.042 12.782 -0.631 1.00 16.22 ? 7 DT B C5 1 HETATM 139 C C7 . DT B 1 7 ? 9.533 12.871 -0.765 1.00 16.93 ? 7 DT B C7 1 HETATM 140 C C6 . DT B 1 7 ? 7.283 12.402 -1.666 1.00 14.18 ? 7 DT B C6 1 HETATM 141 MG MG . MG B 2 . ? 22.520 0.000 0.000 0.25 47.87 ? 8 MG B MG 1 HETATM 142 MG MG . MG B 2 . ? 11.260 7.956 -12.178 0.50 17.80 ? 9 MG B MG 1
spin
Assembly
Assembly ID: 184d_1
Assembly defined by
: Author
PDB ID
:
184d
Experimental method
: X-RAY DIFFRACTION
Resolution
: 1.8 Å
UniProt ID
: N/A
PubMed ID
:
7613864
Ligand 1
:
MG
Ligand 2
:
MG
Ligand 3
:
MG
Ligand 4
:
MG
Ligand 5
:
DNA
Download
mmCIF Format
PDB Format
Ligand ID
NUC pairing detail
Ligand Name
Synonyms
Formula
2D structure
MG
N/A
Magnesium(2+)
1: Magnesium, doubly charged positive ion; 2: Magnesium(ii) cation; 3: Magnesium, ion (mg(2+)); 4: Magnesium(2+) ion; 5: Mg2+; 6: Magnesium cation; 7: Mg(2+); 8: Magnesium ion; 9: Mg;
Mg
MG
N/A
Magnesium(2+)
1: Magnesium, doubly charged positive ion; 2: Magnesium(ii) cation; 3: Magnesium, ion (mg(2+)); 4: Magnesium(2+) ion; 5: Mg2+; 6: Magnesium cation; 7: Mg(2+); 8: Magnesium ion; 9: Mg;
Mg
MG
N/A
Magnesium(2+)
1: Magnesium, doubly charged positive ion; 2: Magnesium(ii) cation; 3: Magnesium, ion (mg(2+)); 4: Magnesium(2+) ion; 5: Mg2+; 6: Magnesium cation; 7: Mg(2+); 8: Magnesium ion; 9: Mg;
Mg
MG
N/A
Magnesium(2+)
1: Magnesium, doubly charged positive ion; 2: Magnesium(ii) cation; 3: Magnesium, ion (mg(2+)); 4: Magnesium(2+) ion; 5: Mg2+; 6: Magnesium cation; 7: Mg(2+); 8: Magnesium ion; 9: Mg;
Mg
DNA
A2:DNA A1:DNA
Deoxyribonucleic acid
N/A
"C11 H8 O4"
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)