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Yang Lab
Function Annotation for BL2858574
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data_152d_1 # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num HETATM 1 O "O5'" . DC A 1 1 ? 9.402 20.159 22.575 1.00 7.21 ? 1 DC A "O5'" 1 HETATM 2 C "C5'" . DC A 1 1 ? 9.725 21.188 23.423 1.00 5.99 ? 1 DC A "C5'" 1 HETATM 3 C "C4'" . DC A 1 1 ? 11.126 21.146 23.863 1.00 5.78 ? 1 DC A "C4'" 1 HETATM 4 O "O4'" . DC A 1 1 ? 11.377 19.997 24.733 1.00 5.82 ? 1 DC A "O4'" 1 HETATM 5 C "C3'" . DC A 1 1 ? 12.207 21.038 22.712 1.00 5.66 ? 1 DC A "C3'" 1 HETATM 6 O "O3'" . DC A 1 1 ? 13.306 21.799 23.058 1.00 5.19 ? 1 DC A "O3'" 1 HETATM 7 C "C2'" . DC A 1 1 ? 12.501 19.515 22.662 1.00 5.84 ? 1 DC A "C2'" 1 HETATM 8 C "C1'" . DC A 1 1 ? 12.455 19.165 24.213 1.00 5.27 ? 1 DC A "C1'" 1 HETATM 9 N N1 . DC A 1 1 ? 11.986 17.751 24.326 1.00 4.80 ? 1 DC A N1 1 HETATM 10 C C2 . DC A 1 1 ? 12.962 16.785 24.455 1.00 4.51 ? 1 DC A C2 1 HETATM 11 O O2 . DC A 1 1 ? 14.150 17.068 24.490 1.00 5.08 ? 1 DC A O2 1 HETATM 12 N N3 . DC A 1 1 ? 12.526 15.500 24.568 1.00 4.65 ? 1 DC A N3 1 HETATM 13 C C4 . DC A 1 1 ? 11.215 15.091 24.512 1.00 4.96 ? 1 DC A C4 1 HETATM 14 N N4 . DC A 1 1 ? 10.903 13.757 24.529 1.00 4.91 ? 1 DC A N4 1 HETATM 15 C C5 . DC A 1 1 ? 10.240 16.122 24.369 1.00 4.61 ? 1 DC A C5 1 HETATM 16 C C6 . DC A 1 1 ? 10.650 17.373 24.236 1.00 4.55 ? 1 DC A C6 1 HETATM 17 P P . DG A 1 2 ? 13.887 22.924 22.131 1.00 6.74 ? 2 DG A P 1 HETATM 18 O OP1 . DG A 1 2 ? 14.896 23.692 22.856 1.00 6.96 ? 2 DG A OP1 1 HETATM 19 O OP2 . DG A 1 2 ? 12.795 23.592 21.545 1.00 7.20 ? 2 DG A OP2 1 HETATM 20 O "O5'" . DG A 1 2 ? 14.613 22.138 20.886 1.00 6.84 ? 2 DG A "O5'" 1 HETATM 21 C "C5'" . DG A 1 2 ? 15.775 21.353 21.275 1.00 6.92 ? 2 DG A "C5'" 1 HETATM 22 C "C4'" . DG A 1 2 ? 16.125 20.559 19.998 1.00 7.32 ? 2 DG A "C4'" 1 HETATM 23 O "O4'" . DG A 1 2 ? 15.161 19.481 19.963 1.00 6.63 ? 2 DG A "O4'" 1 HETATM 24 C "C3'" . DG A 1 2 ? 15.959 21.337 18.674 1.00 8.13 ? 2 DG A "C3'" 1 HETATM 25 O "O3'" . DG A 1 2 ? 17.026 20.918 17.825 1.00 10.37 ? 2 DG A "O3'" 1 HETATM 26 C "C2'" . DG A 1 2 ? 14.643 20.785 18.005 1.00 7.05 ? 2 DG A "C2'" 1 HETATM 27 C "C1'" . DG A 1 2 ? 14.780 19.276 18.587 1.00 6.64 ? 2 DG A "C1'" 1 HETATM 28 N N9 . DG A 1 2 ? 13.616 18.487 18.444 1.00 6.53 ? 2 DG A N9 1 HETATM 29 C C8 . DG A 1 2 ? 12.313 18.854 18.420 1.00 6.46 ? 2 DG A C8 1 HETATM 30 N N7 . DG A 1 2 ? 11.451 17.828 18.247 1.00 6.11 ? 2 DG A N7 1 HETATM 31 C C5 . DG A 1 2 ? 12.302 16.759 18.104 1.00 5.80 ? 2 DG A C5 1 HETATM 32 C C6 . DG A 1 2 ? 12.047 15.378 17.897 1.00 5.84 ? 2 DG A C6 1 HETATM 33 O O6 . DG A 1 2 ? 10.904 14.846 17.797 1.00 5.84 ? 2 DG A O6 1 HETATM 34 N N1 . DG A 1 2 ? 13.084 14.538 17.940 1.00 5.19 ? 2 DG A N1 1 HETATM 35 C C2 . DG A 1 2 ? 14.330 15.021 18.093 1.00 5.40 ? 2 DG A C2 1 HETATM 36 N N2 . DG A 1 2 ? 15.301 14.239 18.114 1.00 5.73 ? 2 DG A N2 1 HETATM 37 N N3 . DG A 1 2 ? 14.720 16.295 18.269 1.00 5.84 ? 2 DG A N3 1 HETATM 38 C C4 . DG A 1 2 ? 13.618 17.091 18.299 1.00 5.72 ? 2 DG A C4 1 HETATM 39 P P . DA A 1 3 ? 17.862 21.860 16.888 1.00 13.42 ? 3 DA A P 1 HETATM 40 O OP1 . DA A 1 3 ? 18.572 22.718 17.746 1.00 12.14 ? 3 DA A OP1 1 HETATM 41 O OP2 . DA A 1 3 ? 17.019 22.368 15.783 1.00 13.24 ? 3 DA A OP2 1 HETATM 42 O "O5'" . DA A 1 3 ? 19.092 20.920 16.329 1.00 10.62 ? 3 DA A "O5'" 1 HETATM 43 C "C5'" . DA A 1 3 ? 19.884 20.368 17.301 1.00 8.71 ? 3 DA A "C5'" 1 HETATM 44 C "C4'" . DA A 1 3 ? 20.100 18.951 16.719 1.00 6.88 ? 3 DA A "C4'" 1 HETATM 45 O "O4'" . DA A 1 3 ? 18.880 18.192 16.910 1.00 5.16 ? 3 DA A "O4'" 1 HETATM 46 C "C3'" . DA A 1 3 ? 20.495 18.843 15.218 1.00 7.60 ? 3 DA A "C3'" 1 HETATM 47 O "O3'" . DA A 1 3 ? 21.609 18.120 15.114 1.00 8.38 ? 3 DA A "O3'" 1 HETATM 48 C "C2'" . DA A 1 3 ? 19.308 18.145 14.611 1.00 6.89 ? 3 DA A "C2'" 1 HETATM 49 C "C1'" . DA A 1 3 ? 18.719 17.295 15.850 1.00 5.97 ? 3 DA A "C1'" 1 HETATM 50 N N9 . DA A 1 3 ? 17.293 17.183 15.615 1.00 4.95 ? 3 DA A N9 1 HETATM 51 C C8 . DA A 1 3 ? 16.403 18.177 15.554 1.00 4.20 ? 3 DA A C8 1 HETATM 52 N N7 . DA A 1 3 ? 15.171 17.760 15.271 1.00 4.48 ? 3 DA A N7 1 HETATM 53 C C5 . DA A 1 3 ? 15.314 16.405 15.163 1.00 3.83 ? 3 DA A C5 1 HETATM 54 C C6 . DA A 1 3 ? 14.355 15.371 14.869 1.00 3.43 ? 3 DA A C6 1 HETATM 55 N N6 . DA A 1 3 ? 13.056 15.620 14.707 1.00 3.45 ? 3 DA A N6 1 HETATM 56 N N1 . DA A 1 3 ? 14.854 14.112 14.772 1.00 3.81 ? 3 DA A N1 1 HETATM 57 C C2 . DA A 1 3 ? 16.145 13.881 15.005 1.00 3.43 ? 3 DA A C2 1 HETATM 58 N N3 . DA A 1 3 ? 17.104 14.765 15.263 1.00 3.38 ? 3 DA A N3 1 HETATM 59 C C4 . DA A 1 3 ? 16.603 16.006 15.336 1.00 3.85 ? 3 DA A C4 1 HETATM 60 P P . DT A 1 4 ? 22.492 17.754 13.849 1.00 10.67 ? 4 DT A P 1 HETATM 61 O OP1 . DT A 1 4 ? 23.705 17.310 14.468 1.00 11.17 ? 4 DT A OP1 1 HETATM 62 O OP2 . DT A 1 4 ? 22.429 18.822 12.910 1.00 11.20 ? 4 DT A OP2 1 HETATM 63 O "O5'" . DT A 1 4 ? 21.915 16.358 13.171 1.00 8.98 ? 4 DT A "O5'" 1 HETATM 64 C "C5'" . DT A 1 4 ? 22.088 15.179 13.862 1.00 8.22 ? 4 DT A "C5'" 1 HETATM 65 C "C4'" . DT A 1 4 ? 21.520 14.083 12.927 1.00 6.94 ? 4 DT A "C4'" 1 HETATM 66 O "O4'" . DT A 1 4 ? 20.122 14.190 12.920 1.00 6.44 ? 4 DT A "O4'" 1 HETATM 67 C "C3'" . DT A 1 4 ? 22.005 14.196 11.427 1.00 7.41 ? 4 DT A "C3'" 1 HETATM 68 O "O3'" . DT A 1 4 ? 22.583 13.026 11.082 1.00 7.98 ? 4 DT A "O3'" 1 HETATM 69 C "C2'" . DT A 1 4 ? 20.683 14.429 10.651 1.00 6.43 ? 4 DT A "C2'" 1 HETATM 70 C "C1'" . DT A 1 4 ? 19.625 13.931 11.595 1.00 6.42 ? 4 DT A "C1'" 1 HETATM 71 N N1 . DT A 1 4 ? 18.312 14.678 11.584 1.00 7.09 ? 4 DT A N1 1 HETATM 72 C C2 . DT A 1 4 ? 17.176 13.919 11.474 1.00 6.48 ? 4 DT A C2 1 HETATM 73 O O2 . DT A 1 4 ? 17.176 12.714 11.400 1.00 7.01 ? 4 DT A O2 1 HETATM 74 N N3 . DT A 1 4 ? 16.003 14.599 11.504 1.00 6.10 ? 4 DT A N3 1 HETATM 75 C C4 . DT A 1 4 ? 15.859 15.975 11.639 1.00 6.47 ? 4 DT A C4 1 HETATM 76 O O4 . DT A 1 4 ? 14.720 16.452 11.658 1.00 6.23 ? 4 DT A O4 1 HETATM 77 C C5 . DT A 1 4 ? 17.062 16.735 11.756 1.00 6.71 ? 4 DT A C5 1 HETATM 78 C C7 . DT A 1 4 ? 17.081 18.229 11.920 1.00 6.43 ? 4 DT A C7 1 HETATM 79 C C6 . DT A 1 4 ? 18.223 16.059 11.740 1.00 7.07 ? 4 DT A C6 1 HETATM 80 P P . DC A 1 5 ? 23.438 12.796 9.724 1.00 9.16 ? 5 DC A P 1 HETATM 81 O OP1 . DC A 1 5 ? 24.017 11.532 9.987 1.00 9.88 ? 5 DC A OP1 1 HETATM 82 O OP2 . DC A 1 5 ? 24.044 13.964 9.291 1.00 9.23 ? 5 DC A OP2 1 HETATM 83 O "O5'" . DC A 1 5 ? 22.263 12.303 8.631 1.00 8.84 ? 5 DC A "O5'" 1 HETATM 84 C "C5'" . DC A 1 5 ? 21.604 11.142 8.821 1.00 7.40 ? 5 DC A "C5'" 1 HETATM 85 C "C4'" . DC A 1 5 ? 20.379 11.230 7.846 1.00 7.69 ? 5 DC A "C4'" 1 HETATM 86 O "O4'" . DC A 1 5 ? 19.433 12.146 8.436 1.00 7.23 ? 5 DC A "O4'" 1 HETATM 87 C "C3'" . DC A 1 5 ? 20.735 11.764 6.459 1.00 7.99 ? 5 DC A "C3'" 1 HETATM 88 O "O3'" . DC A 1 5 ? 20.120 10.965 5.483 1.00 8.69 ? 5 DC A "O3'" 1 HETATM 89 C "C2'" . DC A 1 5 ? 20.167 13.187 6.355 1.00 7.61 ? 5 DC A "C2'" 1 HETATM 90 C "C1'" . DC A 1 5 ? 18.989 12.953 7.413 1.00 7.36 ? 5 DC A "C1'" 1 HETATM 91 N N1 . DC A 1 5 ? 18.255 14.197 7.756 1.00 6.34 ? 5 DC A N1 1 HETATM 92 C C2 . DC A 1 5 ? 16.933 13.977 8.089 1.00 6.66 ? 5 DC A C2 1 HETATM 93 O O2 . DC A 1 5 ? 16.396 12.890 8.172 1.00 6.04 ? 5 DC A O2 1 HETATM 94 N N3 . DC A 1 5 ? 16.205 15.111 8.362 1.00 6.85 ? 5 DC A N3 1 HETATM 95 C C4 . DC A 1 5 ? 16.694 16.394 8.359 1.00 6.69 ? 5 DC A C4 1 HETATM 96 N N4 . DC A 1 5 ? 15.795 17.372 8.589 1.00 5.98 ? 5 DC A N4 1 HETATM 97 C C5 . DC A 1 5 ? 18.068 16.582 8.005 1.00 6.61 ? 5 DC A C5 1 HETATM 98 C C6 . DC A 1 5 ? 18.788 15.479 7.755 1.00 7.02 ? 5 DC A C6 1 HETATM 99 P P . DG A 1 6 ? 20.940 9.871 4.658 1.00 9.80 ? 6 DG A P 1 HETATM 100 O OP1 . DG A 1 6 ? 21.451 8.973 5.613 1.00 10.70 ? 6 DG A OP1 1 HETATM 101 O OP2 . DG A 1 6 ? 21.790 10.576 3.710 1.00 9.42 ? 6 DG A OP2 1 HETATM 102 O "O5'" . DG A 1 6 ? 19.780 9.012 3.914 1.00 8.23 ? 6 DG A "O5'" 1 HETATM 103 C "C5'" . DG A 1 6 ? 18.998 8.117 4.554 1.00 7.35 ? 6 DG A "C5'" 1 HETATM 104 C "C4'" . DG A 1 6 ? 17.941 7.567 3.583 1.00 6.70 ? 6 DG A "C4'" 1 HETATM 105 O "O4'" . DG A 1 6 ? 17.063 8.587 3.152 1.00 5.78 ? 6 DG A "O4'" 1 HETATM 106 C "C3'" . DG A 1 6 ? 18.507 7.011 2.241 1.00 5.87 ? 6 DG A "C3'" 1 HETATM 107 O "O3'" . DG A 1 6 ? 17.630 5.984 1.871 1.00 6.25 ? 6 DG A "O3'" 1 HETATM 108 C "C2'" . DG A 1 6 ? 18.528 8.250 1.358 1.00 5.47 ? 6 DG A "C2'" 1 HETATM 109 C "C1'" . DG A 1 6 ? 17.207 8.987 1.759 1.00 5.38 ? 6 DG A "C1'" 1 HETATM 110 N N9 . DG A 1 6 ? 17.265 10.389 1.690 1.00 5.58 ? 6 DG A N9 1 HETATM 111 C C8 . DG A 1 6 ? 18.307 11.223 1.782 1.00 5.86 ? 6 DG A C8 1 HETATM 112 N N7 . DG A 1 6 ? 17.994 12.512 1.763 1.00 6.45 ? 6 DG A N7 1 HETATM 113 C C5 . DG A 1 6 ? 16.639 12.505 1.677 1.00 5.60 ? 6 DG A C5 1 HETATM 114 C C6 . DG A 1 6 ? 15.676 13.580 1.587 1.00 6.05 ? 6 DG A C6 1 HETATM 115 O O6 . DG A 1 6 ? 15.971 14.816 1.593 1.00 5.80 ? 6 DG A O6 1 HETATM 116 N N1 . DG A 1 6 ? 14.389 13.232 1.536 1.00 5.51 ? 6 DG A N1 1 HETATM 117 C C2 . DG A 1 6 ? 14.041 11.961 1.500 1.00 5.78 ? 6 DG A C2 1 HETATM 118 N N2 . DG A 1 6 ? 12.827 11.633 1.418 1.00 5.90 ? 6 DG A N2 1 HETATM 119 N N3 . DG A 1 6 ? 14.826 10.866 1.537 1.00 5.26 ? 6 DG A N3 1 HETATM 120 C C4 . DG A 1 6 ? 16.130 11.250 1.623 1.00 5.82 ? 6 DG A C4 1 HETATM 121 C C1 . DM1 A 2 . ? 15.137 18.308 4.882 1.00 7.09 ? 7 DM1 A C1 1 HETATM 122 C C2 . DM1 A 2 . ? 16.344 19.047 4.902 1.00 6.02 ? 7 DM1 A C2 1 HETATM 123 C C3 . DM1 A 2 . ? 17.550 18.370 4.878 1.00 6.39 ? 7 DM1 A C3 1 HETATM 124 C C4 . DM1 A 2 . ? 17.557 16.958 4.868 1.00 5.38 ? 7 DM1 A C4 1 HETATM 125 O O4 . DM1 A 2 . ? 18.793 16.346 4.847 1.00 6.02 ? 7 DM1 A O4 1 HETATM 126 C C5 . DM1 A 2 . ? 16.362 16.238 4.837 1.00 5.67 ? 7 DM1 A C5 1 HETATM 127 C C6 . DM1 A 2 . ? 16.333 14.825 4.830 1.00 5.87 ? 7 DM1 A C6 1 HETATM 128 O O6 . DM1 A 2 . ? 17.498 14.126 4.734 1.00 4.78 ? 7 DM1 A O6 1 HETATM 129 C C7 . DM1 A 2 . ? 15.114 14.120 4.846 1.00 5.47 ? 7 DM1 A C7 1 HETATM 130 C C8 . DM1 A 2 . ? 15.086 12.706 4.798 1.00 5.34 ? 7 DM1 A C8 1 HETATM 131 O O8 . DM1 A 2 . ? 16.241 11.946 4.824 1.00 5.08 ? 7 DM1 A O8 1 HETATM 132 C C9 . DM1 A 2 . ? 13.849 12.027 4.758 1.00 5.07 ? 7 DM1 A C9 1 HETATM 133 C C10 . DM1 A 2 . ? 13.906 10.542 4.818 1.00 5.43 ? 7 DM1 A C10 1 HETATM 134 O O10 . DM1 A 2 . ? 14.491 10.294 6.146 1.00 5.05 ? 7 DM1 A O10 1 HETATM 135 C C11 . DM1 A 2 . ? 12.622 9.781 4.505 1.00 5.21 ? 7 DM1 A C11 1 HETATM 136 C C12 . DM1 A 2 . ? 11.448 10.538 5.388 1.00 5.31 ? 7 DM1 A C12 1 HETATM 137 O O12 . DM1 A 2 . ? 11.587 10.721 6.834 1.00 4.27 ? 7 DM1 A O12 1 HETATM 138 C C13 . DM1 A 2 . ? 10.181 9.724 5.082 1.00 6.03 ? 7 DM1 A C13 1 HETATM 139 O O13 . DM1 A 2 . ? 9.428 10.087 4.050 1.00 6.34 ? 7 DM1 A O13 1 HETATM 140 C C14 . DM1 A 2 . ? 9.835 8.537 5.938 1.00 5.46 ? 7 DM1 A C14 1 HETATM 141 C C15 . DM1 A 2 . ? 11.330 11.981 4.769 1.00 4.65 ? 7 DM1 A C15 1 HETATM 142 C C16 . DM1 A 2 . ? 12.661 12.710 4.789 1.00 5.22 ? 7 DM1 A C16 1 HETATM 143 C C17 . DM1 A 2 . ? 12.675 14.129 4.825 1.00 5.32 ? 7 DM1 A C17 1 HETATM 144 O O17 . DM1 A 2 . ? 11.507 14.789 4.756 1.00 5.11 ? 7 DM1 A O17 1 HETATM 145 C C18 . DM1 A 2 . ? 13.904 14.822 4.834 1.00 5.55 ? 7 DM1 A C18 1 HETATM 146 C C19 . DM1 A 2 . ? 13.892 16.238 4.860 1.00 5.93 ? 7 DM1 A C19 1 HETATM 147 O O19 . DM1 A 2 . ? 12.748 16.875 4.877 1.00 6.80 ? 7 DM1 A O19 1 HETATM 148 C C20 . DM1 A 2 . ? 15.138 16.915 4.866 1.00 6.28 ? 7 DM1 A C20 1 HETATM 149 C C21 . DM1 A 2 . ? 20.055 17.067 4.870 1.00 6.16 ? 7 DM1 A C21 1 HETATM 150 C "C1'" . DM1 A 2 . ? 15.439 9.277 6.360 1.00 5.58 ? 7 DM1 A "C1'" 1 HETATM 151 C "C2'" . DM1 A 2 . ? 16.627 9.760 7.290 1.00 5.38 ? 7 DM1 A "C2'" 1 HETATM 152 C "C3'" . DM1 A 2 . ? 15.956 9.840 8.724 1.00 6.72 ? 7 DM1 A "C3'" 1 HETATM 153 N "N3'" . DM1 A 2 . ? 17.054 10.203 9.675 1.00 6.29 ? 7 DM1 A "N3'" 1 HETATM 154 C "C4'" . DM1 A 2 . ? 15.247 8.517 9.174 1.00 6.32 ? 7 DM1 A "C4'" 1 HETATM 155 O "O4'" . DM1 A 2 . ? 16.275 7.499 9.209 1.00 7.62 ? 7 DM1 A "O4'" 1 HETATM 156 C "C5'" . DM1 A 2 . ? 14.129 8.146 8.137 1.00 6.85 ? 7 DM1 A "C5'" 1 HETATM 157 O "O5'" . DM1 A 2 . ? 14.823 8.061 6.825 1.00 6.75 ? 7 DM1 A "O5'" 1 HETATM 158 C "C6'" . DM1 A 2 . ? 13.516 6.799 8.452 1.00 7.09 ? 7 DM1 A "C6'" 1 HETATM 1 O "O5'" . DC B 1 1 ? 7.691 18.448 3.590 1.00 7.21 ? 1 DC B "O5'" 1 HETATM 2 C "C5'" . DC B 1 1 ? 6.662 18.125 2.742 1.00 5.99 ? 1 DC B "C5'" 1 HETATM 3 C "C4'" . DC B 1 1 ? 6.704 16.724 2.302 1.00 5.78 ? 1 DC B "C4'" 1 HETATM 4 O "O4'" . DC B 1 1 ? 7.853 16.473 1.432 1.00 5.82 ? 1 DC B "O4'" 1 HETATM 5 C "C3'" . DC B 1 1 ? 6.812 15.643 3.453 1.00 5.66 ? 1 DC B "C3'" 1 HETATM 6 O "O3'" . DC B 1 1 ? 6.051 14.544 3.107 1.00 5.19 ? 1 DC B "O3'" 1 HETATM 7 C "C2'" . DC B 1 1 ? 8.335 15.349 3.503 1.00 5.84 ? 1 DC B "C2'" 1 HETATM 8 C "C1'" . DC B 1 1 ? 8.685 15.395 1.952 1.00 5.27 ? 1 DC B "C1'" 1 HETATM 9 N N1 . DC B 1 1 ? 10.099 15.864 1.839 1.00 4.80 ? 1 DC B N1 1 HETATM 10 C C2 . DC B 1 1 ? 11.065 14.888 1.710 1.00 4.51 ? 1 DC B C2 1 HETATM 11 O O2 . DC B 1 1 ? 10.782 13.700 1.675 1.00 5.08 ? 1 DC B O2 1 HETATM 12 N N3 . DC B 1 1 ? 12.350 15.324 1.597 1.00 4.65 ? 1 DC B N3 1 HETATM 13 C C4 . DC B 1 1 ? 12.759 16.635 1.653 1.00 4.96 ? 1 DC B C4 1 HETATM 14 N N4 . DC B 1 1 ? 14.093 16.947 1.636 1.00 4.91 ? 1 DC B N4 1 HETATM 15 C C5 . DC B 1 1 ? 11.728 17.610 1.796 1.00 4.61 ? 1 DC B C5 1 HETATM 16 C C6 . DC B 1 1 ? 10.477 17.200 1.929 1.00 4.55 ? 1 DC B C6 1 HETATM 17 P P . DG B 1 2 ? 4.926 13.963 4.034 1.00 6.74 ? 2 DG B P 1 HETATM 18 O OP1 . DG B 1 2 ? 4.158 12.954 3.309 1.00 6.96 ? 2 DG B OP1 1 HETATM 19 O OP2 . DG B 1 2 ? 4.258 15.055 4.620 1.00 7.20 ? 2 DG B OP2 1 HETATM 20 O "O5'" . DG B 1 2 ? 5.712 13.237 5.279 1.00 6.84 ? 2 DG B "O5'" 1 HETATM 21 C "C5'" . DG B 1 2 ? 6.497 12.075 4.890 1.00 6.92 ? 2 DG B "C5'" 1 HETATM 22 C "C4'" . DG B 1 2 ? 7.291 11.725 6.167 1.00 7.32 ? 2 DG B "C4'" 1 HETATM 23 O "O4'" . DG B 1 2 ? 8.369 12.689 6.202 1.00 6.63 ? 2 DG B "O4'" 1 HETATM 24 C "C3'" . DG B 1 2 ? 6.513 11.891 7.491 1.00 8.13 ? 2 DG B "C3'" 1 HETATM 25 O "O3'" . DG B 1 2 ? 6.932 10.824 8.340 1.00 10.37 ? 2 DG B "O3'" 1 HETATM 26 C "C2'" . DG B 1 2 ? 7.065 13.207 8.160 1.00 7.05 ? 2 DG B "C2'" 1 HETATM 27 C "C1'" . DG B 1 2 ? 8.574 13.070 7.578 1.00 6.64 ? 2 DG B "C1'" 1 HETATM 28 N N9 . DG B 1 2 ? 9.363 14.234 7.721 1.00 6.53 ? 2 DG B N9 1 HETATM 29 C C8 . DG B 1 2 ? 8.996 15.537 7.745 1.00 6.46 ? 2 DG B C8 1 HETATM 30 N N7 . DG B 1 2 ? 10.022 16.399 7.918 1.00 6.11 ? 2 DG B N7 1 HETATM 31 C C5 . DG B 1 2 ? 11.091 15.548 8.061 1.00 5.80 ? 2 DG B C5 1 HETATM 32 C C6 . DG B 1 2 ? 12.472 15.803 8.268 1.00 5.84 ? 2 DG B C6 1 HETATM 33 O O6 . DG B 1 2 ? 13.004 16.946 8.368 1.00 5.84 ? 2 DG B O6 1 HETATM 34 N N1 . DG B 1 2 ? 13.312 14.766 8.225 1.00 5.19 ? 2 DG B N1 1 HETATM 35 C C2 . DG B 1 2 ? 12.829 13.520 8.072 1.00 5.40 ? 2 DG B C2 1 HETATM 36 N N2 . DG B 1 2 ? 13.611 12.549 8.051 1.00 5.73 ? 2 DG B N2 1 HETATM 37 N N3 . DG B 1 2 ? 11.555 13.130 7.896 1.00 5.84 ? 2 DG B N3 1 HETATM 38 C C4 . DG B 1 2 ? 10.759 14.232 7.866 1.00 5.72 ? 2 DG B C4 1 HETATM 39 P P . DA B 1 3 ? 5.990 9.988 9.277 1.00 13.42 ? 3 DA B P 1 HETATM 40 O OP1 . DA B 1 3 ? 5.132 9.278 8.419 1.00 12.14 ? 3 DA B OP1 1 HETATM 41 O OP2 . DA B 1 3 ? 5.482 10.831 10.382 1.00 13.24 ? 3 DA B OP2 1 HETATM 42 O "O5'" . DA B 1 3 ? 6.930 8.758 9.836 1.00 10.62 ? 3 DA B "O5'" 1 HETATM 43 C "C5'" . DA B 1 3 ? 7.482 7.966 8.864 1.00 8.71 ? 3 DA B "C5'" 1 HETATM 44 C "C4'" . DA B 1 3 ? 8.899 7.750 9.446 1.00 6.88 ? 3 DA B "C4'" 1 HETATM 45 O "O4'" . DA B 1 3 ? 9.658 8.970 9.255 1.00 5.16 ? 3 DA B "O4'" 1 HETATM 46 C "C3'" . DA B 1 3 ? 9.007 7.355 10.947 1.00 7.60 ? 3 DA B "C3'" 1 HETATM 47 O "O3'" . DA B 1 3 ? 9.730 6.241 11.051 1.00 8.38 ? 3 DA B "O3'" 1 HETATM 48 C "C2'" . DA B 1 3 ? 9.705 8.542 11.554 1.00 6.89 ? 3 DA B "C2'" 1 HETATM 49 C "C1'" . DA B 1 3 ? 10.555 9.131 10.315 1.00 5.97 ? 3 DA B "C1'" 1 HETATM 50 N N9 . DA B 1 3 ? 10.667 10.557 10.550 1.00 4.95 ? 3 DA B N9 1 HETATM 51 C C8 . DA B 1 3 ? 9.673 11.447 10.611 1.00 4.20 ? 3 DA B C8 1 HETATM 52 N N7 . DA B 1 3 ? 10.090 12.679 10.894 1.00 4.48 ? 3 DA B N7 1 HETATM 53 C C5 . DA B 1 3 ? 11.445 12.536 11.002 1.00 3.83 ? 3 DA B C5 1 HETATM 54 C C6 . DA B 1 3 ? 12.479 13.495 11.296 1.00 3.43 ? 3 DA B C6 1 HETATM 55 N N6 . DA B 1 3 ? 12.230 14.794 11.458 1.00 3.45 ? 3 DA B N6 1 HETATM 56 N N1 . DA B 1 3 ? 13.738 12.996 11.393 1.00 3.81 ? 3 DA B N1 1 HETATM 57 C C2 . DA B 1 3 ? 13.969 11.705 11.160 1.00 3.43 ? 3 DA B C2 1 HETATM 58 N N3 . DA B 1 3 ? 13.085 10.746 10.902 1.00 3.38 ? 3 DA B N3 1 HETATM 59 C C4 . DA B 1 3 ? 11.844 11.247 10.829 1.00 3.85 ? 3 DA B C4 1 HETATM 60 P P . DT B 1 4 ? 10.096 5.358 12.316 1.00 10.67 ? 4 DT B P 1 HETATM 61 O OP1 . DT B 1 4 ? 10.540 4.145 11.697 1.00 11.17 ? 4 DT B OP1 1 HETATM 62 O OP2 . DT B 1 4 ? 9.028 5.421 13.255 1.00 11.20 ? 4 DT B OP2 1 HETATM 63 O "O5'" . DT B 1 4 ? 11.492 5.935 12.994 1.00 8.98 ? 4 DT B "O5'" 1 HETATM 64 C "C5'" . DT B 1 4 ? 12.671 5.762 12.303 1.00 8.22 ? 4 DT B "C5'" 1 HETATM 65 C "C4'" . DT B 1 4 ? 13.767 6.330 13.238 1.00 6.94 ? 4 DT B "C4'" 1 HETATM 66 O "O4'" . DT B 1 4 ? 13.660 7.728 13.245 1.00 6.44 ? 4 DT B "O4'" 1 HETATM 67 C "C3'" . DT B 1 4 ? 13.654 5.845 14.738 1.00 7.41 ? 4 DT B "C3'" 1 HETATM 68 O "O3'" . DT B 1 4 ? 14.824 5.267 15.083 1.00 7.98 ? 4 DT B "O3'" 1 HETATM 69 C "C2'" . DT B 1 4 ? 13.421 7.167 15.514 1.00 6.43 ? 4 DT B "C2'" 1 HETATM 70 C "C1'" . DT B 1 4 ? 13.919 8.225 14.570 1.00 6.42 ? 4 DT B "C1'" 1 HETATM 71 N N1 . DT B 1 4 ? 13.172 9.538 14.581 1.00 7.09 ? 4 DT B N1 1 HETATM 72 C C2 . DT B 1 4 ? 13.931 10.674 14.691 1.00 6.48 ? 4 DT B C2 1 HETATM 73 O O2 . DT B 1 4 ? 15.136 10.674 14.765 1.00 7.01 ? 4 DT B O2 1 HETATM 74 N N3 . DT B 1 4 ? 13.251 11.847 14.661 1.00 6.10 ? 4 DT B N3 1 HETATM 75 C C4 . DT B 1 4 ? 11.875 11.991 14.526 1.00 6.47 ? 4 DT B C4 1 HETATM 76 O O4 . DT B 1 4 ? 11.398 13.130 14.507 1.00 6.23 ? 4 DT B O4 1 HETATM 77 C C5 . DT B 1 4 ? 11.115 10.788 14.409 1.00 6.71 ? 4 DT B C5 1 HETATM 78 C C7 . DT B 1 4 ? 9.621 10.769 14.245 1.00 6.43 ? 4 DT B C7 1 HETATM 79 C C6 . DT B 1 4 ? 11.791 9.627 14.425 1.00 7.07 ? 4 DT B C6 1 HETATM 80 P P . DC B 1 5 ? 15.054 4.412 16.441 1.00 9.16 ? 5 DC B P 1 HETATM 81 O OP1 . DC B 1 5 ? 16.318 3.833 16.178 1.00 9.88 ? 5 DC B OP1 1 HETATM 82 O OP2 . DC B 1 5 ? 13.886 3.806 16.874 1.00 9.23 ? 5 DC B OP2 1 HETATM 83 O "O5'" . DC B 1 5 ? 15.547 5.587 17.534 1.00 8.84 ? 5 DC B "O5'" 1 HETATM 84 C "C5'" . DC B 1 5 ? 16.708 6.246 17.344 1.00 7.40 ? 5 DC B "C5'" 1 HETATM 85 C "C4'" . DC B 1 5 ? 16.620 7.471 18.319 1.00 7.69 ? 5 DC B "C4'" 1 HETATM 86 O "O4'" . DC B 1 5 ? 15.704 8.417 17.729 1.00 7.23 ? 5 DC B "O4'" 1 HETATM 87 C "C3'" . DC B 1 5 ? 16.086 7.115 19.706 1.00 7.99 ? 5 DC B "C3'" 1 HETATM 88 O "O3'" . DC B 1 5 ? 16.885 7.730 20.682 1.00 8.69 ? 5 DC B "O3'" 1 HETATM 89 C "C2'" . DC B 1 5 ? 14.663 7.683 19.810 1.00 7.61 ? 5 DC B "C2'" 1 HETATM 90 C "C1'" . DC B 1 5 ? 14.897 8.861 18.752 1.00 7.36 ? 5 DC B "C1'" 1 HETATM 91 N N1 . DC B 1 5 ? 13.653 9.595 18.409 1.00 6.34 ? 5 DC B N1 1 HETATM 92 C C2 . DC B 1 5 ? 13.873 10.917 18.076 1.00 6.66 ? 5 DC B C2 1 HETATM 93 O O2 . DC B 1 5 ? 14.960 11.454 17.993 1.00 6.04 ? 5 DC B O2 1 HETATM 94 N N3 . DC B 1 5 ? 12.739 11.645 17.803 1.00 6.85 ? 5 DC B N3 1 HETATM 95 C C4 . DC B 1 5 ? 11.456 11.156 17.806 1.00 6.69 ? 5 DC B C4 1 HETATM 96 N N4 . DC B 1 5 ? 10.478 12.055 17.576 1.00 5.98 ? 5 DC B N4 1 HETATM 97 C C5 . DC B 1 5 ? 11.268 9.782 18.160 1.00 6.61 ? 5 DC B C5 1 HETATM 98 C C6 . DC B 1 5 ? 12.371 9.062 18.410 1.00 7.02 ? 5 DC B C6 1 HETATM 99 P P . DG B 1 6 ? 17.979 6.910 21.507 1.00 9.80 ? 6 DG B P 1 HETATM 100 O OP1 . DG B 1 6 ? 18.877 6.399 20.552 1.00 10.70 ? 6 DG B OP1 1 HETATM 101 O OP2 . DG B 1 6 ? 17.274 6.060 22.455 1.00 9.42 ? 6 DG B OP2 1 HETATM 102 O "O5'" . DG B 1 6 ? 18.838 8.070 22.251 1.00 8.23 ? 6 DG B "O5'" 1 HETATM 103 C "C5'" . DG B 1 6 ? 19.733 8.852 21.611 1.00 7.35 ? 6 DG B "C5'" 1 HETATM 104 C "C4'" . DG B 1 6 ? 20.283 9.909 22.582 1.00 6.70 ? 6 DG B "C4'" 1 HETATM 105 O "O4'" . DG B 1 6 ? 19.263 10.787 23.013 1.00 5.78 ? 6 DG B "O4'" 1 HETATM 106 C "C3'" . DG B 1 6 ? 20.839 9.343 23.924 1.00 5.87 ? 6 DG B "C3'" 1 HETATM 107 O "O3'" . DG B 1 6 ? 21.866 10.220 24.294 1.00 6.25 ? 6 DG B "O3'" 1 HETATM 108 C "C2'" . DG B 1 6 ? 19.600 9.322 24.807 1.00 5.47 ? 6 DG B "C2'" 1 HETATM 109 C "C1'" . DG B 1 6 ? 18.863 10.643 24.406 1.00 5.38 ? 6 DG B "C1'" 1 HETATM 110 N N9 . DG B 1 6 ? 17.461 10.585 24.475 1.00 5.58 ? 6 DG B N9 1 HETATM 111 C C8 . DG B 1 6 ? 16.627 9.543 24.383 1.00 5.86 ? 6 DG B C8 1 HETATM 112 N N7 . DG B 1 6 ? 15.338 9.856 24.402 1.00 6.45 ? 6 DG B N7 1 HETATM 113 C C5 . DG B 1 6 ? 15.345 11.211 24.488 1.00 5.60 ? 6 DG B C5 1 HETATM 114 C C6 . DG B 1 6 ? 14.270 12.174 24.578 1.00 6.05 ? 6 DG B C6 1 HETATM 115 O O6 . DG B 1 6 ? 13.034 11.879 24.572 1.00 5.80 ? 6 DG B O6 1 HETATM 116 N N1 . DG B 1 6 ? 14.618 13.461 24.629 1.00 5.51 ? 6 DG B N1 1 HETATM 117 C C2 . DG B 1 6 ? 15.889 13.809 24.665 1.00 5.78 ? 6 DG B C2 1 HETATM 118 N N2 . DG B 1 6 ? 16.217 15.023 24.747 1.00 5.90 ? 6 DG B N2 1 HETATM 119 N N3 . DG B 1 6 ? 16.984 13.024 24.628 1.00 5.26 ? 6 DG B N3 1 HETATM 120 C C4 . DG B 1 6 ? 16.600 11.720 24.542 1.00 5.82 ? 6 DG B C4 1 HETATM 121 C C1 . DM1 B 2 . ? 9.542 12.713 21.283 1.00 7.09 ? 7 DM1 B C1 1 HETATM 122 C C2 . DM1 B 2 . ? 8.803 11.506 21.263 1.00 6.02 ? 7 DM1 B C2 1 HETATM 123 C C3 . DM1 B 2 . ? 9.480 10.300 21.287 1.00 6.39 ? 7 DM1 B C3 1 HETATM 124 C C4 . DM1 B 2 . ? 10.892 10.293 21.297 1.00 5.38 ? 7 DM1 B C4 1 HETATM 125 O O4 . DM1 B 2 . ? 11.504 9.057 21.318 1.00 6.02 ? 7 DM1 B O4 1 HETATM 126 C C5 . DM1 B 2 . ? 11.612 11.488 21.328 1.00 5.67 ? 7 DM1 B C5 1 HETATM 127 C C6 . DM1 B 2 . ? 13.025 11.517 21.335 1.00 5.87 ? 7 DM1 B C6 1 HETATM 128 O O6 . DM1 B 2 . ? 13.724 10.352 21.431 1.00 4.78 ? 7 DM1 B O6 1 HETATM 129 C C7 . DM1 B 2 . ? 13.730 12.736 21.319 1.00 5.47 ? 7 DM1 B C7 1 HETATM 130 C C8 . DM1 B 2 . ? 15.144 12.764 21.367 1.00 5.34 ? 7 DM1 B C8 1 HETATM 131 O O8 . DM1 B 2 . ? 15.904 11.609 21.341 1.00 5.08 ? 7 DM1 B O8 1 HETATM 132 C C9 . DM1 B 2 . ? 15.823 14.001 21.407 1.00 5.07 ? 7 DM1 B C9 1 HETATM 133 C C10 . DM1 B 2 . ? 17.308 13.944 21.347 1.00 5.43 ? 7 DM1 B C10 1 HETATM 134 O O10 . DM1 B 2 . ? 17.556 13.359 20.019 1.00 5.05 ? 7 DM1 B O10 1 HETATM 135 C C11 . DM1 B 2 . ? 18.069 15.228 21.660 1.00 5.21 ? 7 DM1 B C11 1 HETATM 136 C C12 . DM1 B 2 . ? 17.312 16.402 20.777 1.00 5.31 ? 7 DM1 B C12 1 HETATM 137 O O12 . DM1 B 2 . ? 17.129 16.263 19.331 1.00 4.27 ? 7 DM1 B O12 1 HETATM 138 C C13 . DM1 B 2 . ? 18.126 17.669 21.083 1.00 6.03 ? 7 DM1 B C13 1 HETATM 139 O O13 . DM1 B 2 . ? 17.763 18.422 22.115 1.00 6.34 ? 7 DM1 B O13 1 HETATM 140 C C14 . DM1 B 2 . ? 19.313 18.015 20.227 1.00 5.46 ? 7 DM1 B C14 1 HETATM 141 C C15 . DM1 B 2 . ? 15.869 16.520 21.396 1.00 4.65 ? 7 DM1 B C15 1 HETATM 142 C C16 . DM1 B 2 . ? 15.140 15.189 21.376 1.00 5.22 ? 7 DM1 B C16 1 HETATM 143 C C17 . DM1 B 2 . ? 13.721 15.175 21.340 1.00 5.32 ? 7 DM1 B C17 1 HETATM 144 O O17 . DM1 B 2 . ? 13.061 16.343 21.409 1.00 5.11 ? 7 DM1 B O17 1 HETATM 145 C C18 . DM1 B 2 . ? 13.028 13.946 21.331 1.00 5.55 ? 7 DM1 B C18 1 HETATM 146 C C19 . DM1 B 2 . ? 11.612 13.958 21.305 1.00 5.93 ? 7 DM1 B C19 1 HETATM 147 O O19 . DM1 B 2 . ? 10.975 15.102 21.288 1.00 6.80 ? 7 DM1 B O19 1 HETATM 148 C C20 . DM1 B 2 . ? 10.935 12.712 21.299 1.00 6.28 ? 7 DM1 B C20 1 HETATM 149 C C21 . DM1 B 2 . ? 10.783 7.795 21.295 1.00 6.16 ? 7 DM1 B C21 1 HETATM 150 C "C1'" . DM1 B 2 . ? 18.573 12.411 19.805 1.00 5.58 ? 7 DM1 B "C1'" 1 HETATM 151 C "C2'" . DM1 B 2 . ? 18.090 11.223 18.875 1.00 5.38 ? 7 DM1 B "C2'" 1 HETATM 152 C "C3'" . DM1 B 2 . ? 18.010 11.894 17.441 1.00 6.72 ? 7 DM1 B "C3'" 1 HETATM 153 N "N3'" . DM1 B 2 . ? 17.647 10.796 16.490 1.00 6.29 ? 7 DM1 B "N3'" 1 HETATM 154 C "C4'" . DM1 B 2 . ? 19.333 12.603 16.991 1.00 6.32 ? 7 DM1 B "C4'" 1 HETATM 155 O "O4'" . DM1 B 2 . ? 20.351 11.575 16.956 1.00 7.62 ? 7 DM1 B "O4'" 1 HETATM 156 C "C5'" . DM1 B 2 . ? 19.704 13.721 18.028 1.00 6.85 ? 7 DM1 B "C5'" 1 HETATM 157 O "O5'" . DM1 B 2 . ? 19.789 13.027 19.340 1.00 6.75 ? 7 DM1 B "O5'" 1 HETATM 158 C "C6'" . DM1 B 2 . ? 21.051 14.334 17.713 1.00 7.09 ? 7 DM1 B "C6'" 1
spin
Assembly
Assembly ID: 152d_1
Assembly defined by
: Author
PDB ID
:
152d
Experimental method
: X-RAY DIFFRACTION
Resolution
: 1.4 Å
UniProt ID
: N/A
PubMed ID
:
8142363
Ligand 1
:
DM1
Ligand 2
:
DM1
Ligand 3
:
DNA
Download
mmCIF Format
PDB Format
Ligand ID
NUC pairing detail
Ligand Name
Synonyms
Formula
2D structure
DM1
N/A
Daunorubicin
1: Daunomycin; 2: (+)-daunomycin; 3: (8s-cis)-8-acetyl-10-((3-amino-2,3,6-trideoxy-alpha-l-lyxo-hexopyrannosyl)oxy)-7,8,9,10-tetrahydro-6,8,11-trihydroxy-1-methoxy-5,12-napthacenedione; 4: Acetyladriamycin; 5: (1s,3s)-3-acetyl-3,5,12-trihydroxy-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2,3,6-trideoxy-alpha-l-lyxo-hexopyranoside; 6: Leukaemomycin c; 7: Daunorubicinum;
"C27 H29 N O10"
DM1
N/A
Daunorubicin
1: Daunomycin; 2: (+)-daunomycin; 3: (8s-cis)-8-acetyl-10-((3-amino-2,3,6-trideoxy-alpha-l-lyxo-hexopyrannosyl)oxy)-7,8,9,10-tetrahydro-6,8,11-trihydroxy-1-methoxy-5,12-napthacenedione; 4: Acetyladriamycin; 5: (1s,3s)-3-acetyl-3,5,12-trihydroxy-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2,3,6-trideoxy-alpha-l-lyxo-hexopyranoside; 6: Leukaemomycin c; 7: Daunorubicinum;
"C27 H29 N O10"
DNA
A2:DNA A1:DNA
Deoxyribonucleic acid
N/A
"C11 H8 O4"
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)
