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Yang Lab
Function Annotation for BL2858573
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data_151d_1 # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num HETATM 1 O "O5'" . DC A 1 1 ? 9.444 20.142 22.517 1.00 7.86 ? 1 DC A "O5'" 1 HETATM 2 C "C5'" . DC A 1 1 ? 9.696 21.103 23.447 1.00 6.24 ? 1 DC A "C5'" 1 HETATM 3 C "C4'" . DC A 1 1 ? 11.109 21.147 23.902 1.00 5.98 ? 1 DC A "C4'" 1 HETATM 4 O "O4'" . DC A 1 1 ? 11.398 19.999 24.776 1.00 6.14 ? 1 DC A "O4'" 1 HETATM 5 C "C3'" . DC A 1 1 ? 12.190 21.053 22.781 1.00 6.53 ? 1 DC A "C3'" 1 HETATM 6 O "O3'" . DC A 1 1 ? 13.304 21.804 23.120 1.00 6.29 ? 1 DC A "O3'" 1 HETATM 7 C "C2'" . DC A 1 1 ? 12.450 19.507 22.648 1.00 6.31 ? 1 DC A "C2'" 1 HETATM 8 C "C1'" . DC A 1 1 ? 12.440 19.166 24.220 1.00 5.93 ? 1 DC A "C1'" 1 HETATM 9 N N1 . DC A 1 1 ? 11.971 17.750 24.325 1.00 5.05 ? 1 DC A N1 1 HETATM 10 C C2 . DC A 1 1 ? 12.957 16.790 24.449 1.00 4.84 ? 1 DC A C2 1 HETATM 11 O O2 . DC A 1 1 ? 14.140 17.052 24.488 1.00 5.09 ? 1 DC A O2 1 HETATM 12 N N3 . DC A 1 1 ? 12.520 15.485 24.508 1.00 5.54 ? 1 DC A N3 1 HETATM 13 C C4 . DC A 1 1 ? 11.194 15.087 24.476 1.00 5.26 ? 1 DC A C4 1 HETATM 14 N N4 . DC A 1 1 ? 10.908 13.773 24.568 1.00 4.81 ? 1 DC A N4 1 HETATM 15 C C5 . DC A 1 1 ? 10.225 16.116 24.374 1.00 5.30 ? 1 DC A C5 1 HETATM 16 C C6 . DC A 1 1 ? 10.641 17.366 24.237 1.00 5.05 ? 1 DC A C6 1 HETATM 17 P P . DG A 1 2 ? 13.860 22.959 22.173 1.00 7.99 ? 2 DG A P 1 HETATM 18 O OP1 . DG A 1 2 ? 14.897 23.708 22.889 1.00 8.14 ? 2 DG A OP1 1 HETATM 19 O OP2 . DG A 1 2 ? 12.747 23.562 21.529 1.00 7.35 ? 2 DG A OP2 1 HETATM 20 O "O5'" . DG A 1 2 ? 14.547 22.176 20.865 1.00 7.32 ? 2 DG A "O5'" 1 HETATM 21 C "C5'" . DG A 1 2 ? 15.677 21.413 21.231 1.00 7.48 ? 2 DG A "C5'" 1 HETATM 22 C "C4'" . DG A 1 2 ? 16.063 20.593 20.008 1.00 7.87 ? 2 DG A "C4'" 1 HETATM 23 O "O4'" . DG A 1 2 ? 15.152 19.464 19.933 1.00 7.43 ? 2 DG A "O4'" 1 HETATM 24 C "C3'" . DG A 1 2 ? 15.946 21.325 18.648 1.00 8.55 ? 2 DG A "C3'" 1 HETATM 25 O "O3'" . DG A 1 2 ? 17.065 20.963 17.885 1.00 10.90 ? 2 DG A "O3'" 1 HETATM 26 C "C2'" . DG A 1 2 ? 14.676 20.755 18.021 1.00 7.93 ? 2 DG A "C2'" 1 HETATM 27 C "C1'" . DG A 1 2 ? 14.770 19.277 18.574 1.00 7.17 ? 2 DG A "C1'" 1 HETATM 28 N N9 . DG A 1 2 ? 13.586 18.507 18.443 1.00 6.69 ? 2 DG A N9 1 HETATM 29 C C8 . DG A 1 2 ? 12.311 18.858 18.409 1.00 6.57 ? 2 DG A C8 1 HETATM 30 N N7 . DG A 1 2 ? 11.464 17.849 18.236 1.00 6.58 ? 2 DG A N7 1 HETATM 31 C C5 . DG A 1 2 ? 12.306 16.776 18.148 1.00 6.17 ? 2 DG A C5 1 HETATM 32 C C6 . DG A 1 2 ? 12.039 15.389 17.979 1.00 6.35 ? 2 DG A C6 1 HETATM 33 O O6 . DG A 1 2 ? 10.879 14.894 17.863 1.00 6.06 ? 2 DG A O6 1 HETATM 34 N N1 . DG A 1 2 ? 13.085 14.552 17.946 1.00 5.56 ? 2 DG A N1 1 HETATM 35 C C2 . DG A 1 2 ? 14.327 15.053 18.066 1.00 5.57 ? 2 DG A C2 1 HETATM 36 N N2 . DG A 1 2 ? 15.321 14.290 18.082 1.00 5.23 ? 2 DG A N2 1 HETATM 37 N N3 . DG A 1 2 ? 14.714 16.317 18.242 1.00 6.00 ? 2 DG A N3 1 HETATM 38 C C4 . DG A 1 2 ? 13.611 17.120 18.286 1.00 6.01 ? 2 DG A C4 1 HETATM 39 P P . DA A 1 3 ? 17.896 21.927 16.925 1.00 12.21 ? 3 DA A P 1 HETATM 40 O OP1 . DA A 1 3 ? 18.567 22.792 17.789 1.00 11.83 ? 3 DA A OP1 1 HETATM 41 O OP2 . DA A 1 3 ? 16.999 22.461 15.891 1.00 12.58 ? 3 DA A OP2 1 HETATM 42 O "O5'" . DA A 1 3 ? 19.080 20.969 16.322 1.00 10.19 ? 3 DA A "O5'" 1 HETATM 43 C "C5'" . DA A 1 3 ? 19.838 20.347 17.375 1.00 8.81 ? 3 DA A "C5'" 1 HETATM 44 C "C4'" . DA A 1 3 ? 20.147 18.957 16.742 1.00 8.04 ? 3 DA A "C4'" 1 HETATM 45 O "O4'" . DA A 1 3 ? 18.959 18.144 16.913 1.00 7.20 ? 3 DA A "O4'" 1 HETATM 46 C "C3'" . DA A 1 3 ? 20.529 18.871 15.228 1.00 8.33 ? 3 DA A "C3'" 1 HETATM 47 O "O3'" . DA A 1 3 ? 21.677 18.106 15.131 1.00 8.48 ? 3 DA A "O3'" 1 HETATM 48 C "C2'" . DA A 1 3 ? 19.367 18.180 14.569 1.00 7.64 ? 3 DA A "C2'" 1 HETATM 49 C "C1'" . DA A 1 3 ? 18.744 17.332 15.790 1.00 6.79 ? 3 DA A "C1'" 1 HETATM 50 N N9 . DA A 1 3 ? 17.332 17.232 15.590 1.00 5.78 ? 3 DA A N9 1 HETATM 51 C C8 . DA A 1 3 ? 16.427 18.210 15.549 1.00 5.30 ? 3 DA A C8 1 HETATM 52 N N7 . DA A 1 3 ? 15.209 17.805 15.244 1.00 5.42 ? 3 DA A N7 1 HETATM 53 C C5 . DA A 1 3 ? 15.354 16.449 15.139 1.00 4.78 ? 3 DA A C5 1 HETATM 54 C C6 . DA A 1 3 ? 14.384 15.426 14.816 1.00 4.53 ? 3 DA A C6 1 HETATM 55 N N6 . DA A 1 3 ? 13.087 15.683 14.634 1.00 4.16 ? 3 DA A N6 1 HETATM 56 N N1 . DA A 1 3 ? 14.870 14.175 14.690 1.00 4.88 ? 3 DA A N1 1 HETATM 57 C C2 . DA A 1 3 ? 16.169 13.927 14.903 1.00 4.83 ? 3 DA A C2 1 HETATM 58 N N3 . DA A 1 3 ? 17.144 14.807 15.185 1.00 5.02 ? 3 DA A N3 1 HETATM 59 C C4 . DA A 1 3 ? 16.645 16.052 15.283 1.00 5.07 ? 3 DA A C4 1 HETATM 60 P P . DT A 1 4 ? 22.538 17.847 13.833 1.00 9.53 ? 4 DT A P 1 HETATM 61 O OP1 . DT A 1 4 ? 23.810 17.466 14.339 1.00 9.39 ? 4 DT A OP1 1 HETATM 62 O OP2 . DT A 1 4 ? 22.344 18.920 12.918 1.00 10.29 ? 4 DT A OP2 1 HETATM 63 O "O5'" . DT A 1 4 ? 22.011 16.456 13.114 1.00 8.16 ? 4 DT A "O5'" 1 HETATM 64 C "C5'" . DT A 1 4 ? 22.298 15.261 13.739 1.00 7.70 ? 4 DT A "C5'" 1 HETATM 65 C "C4'" . DT A 1 4 ? 21.642 14.202 12.855 1.00 7.46 ? 4 DT A "C4'" 1 HETATM 66 O "O4'" . DT A 1 4 ? 20.212 14.313 12.894 1.00 8.24 ? 4 DT A "O4'" 1 HETATM 67 C "C3'" . DT A 1 4 ? 22.036 14.315 11.328 1.00 7.47 ? 4 DT A "C3'" 1 HETATM 68 O "O3'" . DT A 1 4 ? 22.588 13.047 11.099 1.00 8.72 ? 4 DT A "O3'" 1 HETATM 69 C "C2'" . DT A 1 4 ? 20.721 14.525 10.603 1.00 6.79 ? 4 DT A "C2'" 1 HETATM 70 C "C1'" . DT A 1 4 ? 19.676 14.049 11.592 1.00 6.89 ? 4 DT A "C1'" 1 HETATM 71 N N1 . DT A 1 4 ? 18.368 14.803 11.587 1.00 7.48 ? 4 DT A N1 1 HETATM 72 C C2 . DT A 1 4 ? 17.242 14.014 11.518 1.00 6.68 ? 4 DT A C2 1 HETATM 73 O O2 . DT A 1 4 ? 17.295 12.806 11.446 1.00 7.19 ? 4 DT A O2 1 HETATM 74 N N3 . DT A 1 4 ? 16.036 14.647 11.494 1.00 6.72 ? 4 DT A N3 1 HETATM 75 C C4 . DT A 1 4 ? 15.867 16.027 11.570 1.00 7.03 ? 4 DT A C4 1 HETATM 76 O O4 . DT A 1 4 ? 14.710 16.489 11.589 1.00 6.61 ? 4 DT A O4 1 HETATM 77 C C5 . DT A 1 4 ? 17.058 16.802 11.666 1.00 7.23 ? 4 DT A C5 1 HETATM 78 C C7 . DT A 1 4 ? 17.009 18.300 11.780 1.00 9.27 ? 4 DT A C7 1 HETATM 79 C C6 . DT A 1 4 ? 18.229 16.173 11.699 1.00 6.96 ? 4 DT A C6 1 HETATM 80 P P . DC A 1 5 ? 23.474 12.809 9.782 1.00 9.64 ? 5 DC A P 1 HETATM 81 O OP1 . DC A 1 5 ? 24.064 11.543 10.009 1.00 11.07 ? 5 DC A OP1 1 HETATM 82 O OP2 . DC A 1 5 ? 24.043 14.047 9.445 1.00 10.32 ? 5 DC A OP2 1 HETATM 83 O "O5'" . DC A 1 5 ? 22.346 12.323 8.667 1.00 9.12 ? 5 DC A "O5'" 1 HETATM 84 C "C5'" . DC A 1 5 ? 21.640 11.214 8.928 1.00 8.39 ? 5 DC A "C5'" 1 HETATM 85 C "C4'" . DC A 1 5 ? 20.480 11.301 7.906 1.00 9.18 ? 5 DC A "C4'" 1 HETATM 86 O "O4'" . DC A 1 5 ? 19.445 12.190 8.427 1.00 8.39 ? 5 DC A "O4'" 1 HETATM 87 C "C3'" . DC A 1 5 ? 20.847 11.797 6.502 1.00 9.33 ? 5 DC A "C3'" 1 HETATM 88 O "O3'" . DC A 1 5 ? 20.179 10.920 5.644 1.00 10.65 ? 5 DC A "O3'" 1 HETATM 89 C "C2'" . DC A 1 5 ? 20.317 13.230 6.419 1.00 9.04 ? 5 DC A "C2'" 1 HETATM 90 C "C1'" . DC A 1 5 ? 19.036 12.984 7.374 1.00 8.15 ? 5 DC A "C1'" 1 HETATM 91 N N1 . DC A 1 5 ? 18.322 14.263 7.752 1.00 7.43 ? 5 DC A N1 1 HETATM 92 C C2 . DC A 1 5 ? 16.994 14.063 8.051 1.00 7.31 ? 5 DC A C2 1 HETATM 93 O O2 . DC A 1 5 ? 16.459 12.976 8.125 1.00 7.35 ? 5 DC A O2 1 HETATM 94 N N3 . DC A 1 5 ? 16.255 15.188 8.321 1.00 7.05 ? 5 DC A N3 1 HETATM 95 C C4 . DC A 1 5 ? 16.778 16.464 8.331 1.00 6.93 ? 5 DC A C4 1 HETATM 96 N N4 . DC A 1 5 ? 15.947 17.498 8.565 1.00 6.28 ? 5 DC A N4 1 HETATM 97 C C5 . DC A 1 5 ? 18.160 16.629 7.998 1.00 7.05 ? 5 DC A C5 1 HETATM 98 C C6 . DC A 1 5 ? 18.874 15.527 7.751 1.00 7.15 ? 5 DC A C6 1 HETATM 99 P P . DG A 1 6 ? 20.949 9.831 4.728 1.00 10.89 ? 6 DG A P 1 HETATM 100 O OP1 . DG A 1 6 ? 21.431 8.869 5.654 1.00 10.22 ? 6 DG A OP1 1 HETATM 101 O OP2 . DG A 1 6 ? 21.785 10.637 3.840 1.00 9.97 ? 6 DG A OP2 1 HETATM 102 O "O5'" . DG A 1 6 ? 19.761 9.015 4.012 1.00 8.85 ? 6 DG A "O5'" 1 HETATM 103 C "C5'" . DG A 1 6 ? 18.916 8.110 4.627 1.00 8.16 ? 6 DG A "C5'" 1 HETATM 104 C "C4'" . DG A 1 6 ? 17.899 7.630 3.581 1.00 8.25 ? 6 DG A "C4'" 1 HETATM 105 O "O4'" . DG A 1 6 ? 17.011 8.666 3.128 1.00 7.74 ? 6 DG A "O4'" 1 HETATM 106 C "C3'" . DG A 1 6 ? 18.576 7.118 2.240 1.00 7.25 ? 6 DG A "C3'" 1 HETATM 107 O "O3'" . DG A 1 6 ? 17.762 6.047 1.899 1.00 7.43 ? 6 DG A "O3'" 1 HETATM 108 C "C2'" . DG A 1 6 ? 18.514 8.311 1.296 1.00 7.09 ? 6 DG A "C2'" 1 HETATM 109 C "C1'" . DG A 1 6 ? 17.207 9.030 1.700 1.00 6.56 ? 6 DG A "C1'" 1 HETATM 110 N N9 . DG A 1 6 ? 17.297 10.472 1.673 1.00 6.36 ? 6 DG A N9 1 HETATM 111 C C8 . DG A 1 6 ? 18.358 11.261 1.733 1.00 6.07 ? 6 DG A C8 1 HETATM 112 N N7 . DG A 1 6 ? 18.066 12.557 1.711 1.00 6.63 ? 6 DG A N7 1 HETATM 113 C C5 . DG A 1 6 ? 16.707 12.568 1.650 1.00 5.88 ? 6 DG A C5 1 HETATM 114 C C6 . DG A 1 6 ? 15.751 13.648 1.606 1.00 6.06 ? 6 DG A C6 1 HETATM 115 O O6 . DG A 1 6 ? 16.072 14.876 1.619 1.00 5.56 ? 6 DG A O6 1 HETATM 116 N N1 . DG A 1 6 ? 14.463 13.311 1.557 1.00 5.52 ? 6 DG A N1 1 HETATM 117 C C2 . DG A 1 6 ? 14.099 12.041 1.504 1.00 5.42 ? 6 DG A C2 1 HETATM 118 N N2 . DG A 1 6 ? 12.904 11.697 1.461 1.00 5.55 ? 6 DG A N2 1 HETATM 119 N N3 . DG A 1 6 ? 14.886 10.948 1.536 1.00 5.36 ? 6 DG A N3 1 HETATM 120 C C4 . DG A 1 6 ? 16.185 11.309 1.603 1.00 5.66 ? 6 DG A C4 1 HETATM 121 C C1 . DM2 A 2 . ? 15.226 18.450 4.896 1.00 7.41 ? 7 DM2 A C1 1 HETATM 122 C C2 . DM2 A 2 . ? 16.429 19.161 4.909 1.00 6.75 ? 7 DM2 A C2 1 HETATM 123 C C3 . DM2 A 2 . ? 17.654 18.469 4.880 1.00 7.59 ? 7 DM2 A C3 1 HETATM 124 C C4 . DM2 A 2 . ? 17.677 17.063 4.829 1.00 6.83 ? 7 DM2 A C4 1 HETATM 125 O O4 . DM2 A 2 . ? 18.898 16.388 4.808 1.00 7.14 ? 7 DM2 A O4 1 HETATM 126 C C5 . DM2 A 2 . ? 16.456 16.353 4.816 1.00 6.85 ? 7 DM2 A C5 1 HETATM 127 C C6 . DM2 A 2 . ? 16.409 14.946 4.803 1.00 6.71 ? 7 DM2 A C6 1 HETATM 128 O O6 . DM2 A 2 . ? 17.561 14.211 4.771 1.00 6.75 ? 7 DM2 A O6 1 HETATM 129 C C7 . DM2 A 2 . ? 15.196 14.209 4.817 1.00 6.33 ? 7 DM2 A C7 1 HETATM 130 C C8 . DM2 A 2 . ? 15.164 12.808 4.784 1.00 6.14 ? 7 DM2 A C8 1 HETATM 131 O O8 . DM2 A 2 . ? 16.295 12.032 4.788 1.00 4.89 ? 7 DM2 A O8 1 HETATM 132 C C9 . DM2 A 2 . ? 13.929 12.131 4.758 1.00 5.85 ? 7 DM2 A C9 1 HETATM 133 C C10 . DM2 A 2 . ? 13.995 10.639 4.786 1.00 6.85 ? 7 DM2 A C10 1 HETATM 134 O O10 . DM2 A 2 . ? 14.592 10.397 6.123 1.00 5.90 ? 7 DM2 A O10 1 HETATM 135 C C11 . DM2 A 2 . ? 12.711 9.868 4.523 1.00 6.15 ? 7 DM2 A C11 1 HETATM 136 C C12 . DM2 A 2 . ? 11.569 10.600 5.359 1.00 6.95 ? 7 DM2 A C12 1 HETATM 137 O O12 . DM2 A 2 . ? 11.611 10.753 6.835 1.00 6.29 ? 7 DM2 A O12 1 HETATM 138 C C13 . DM2 A 2 . ? 10.269 9.864 5.071 1.00 7.62 ? 7 DM2 A C13 1 HETATM 139 O O13 . DM2 A 2 . ? 9.543 10.187 3.954 1.00 7.69 ? 7 DM2 A O13 1 HETATM 140 C C14 . DM2 A 2 . ? 9.825 8.804 6.033 1.00 8.08 ? 7 DM2 A C14 1 HETATM 141 O O14 . DM2 A 2 . ? 8.617 8.191 5.670 1.00 9.67 ? 7 DM2 A O14 1 HETATM 142 C C15 . DM2 A 2 . ? 11.432 12.065 4.766 1.00 6.40 ? 7 DM2 A C15 1 HETATM 143 C C16 . DM2 A 2 . ? 12.729 12.807 4.799 1.00 6.24 ? 7 DM2 A C16 1 HETATM 144 C C17 . DM2 A 2 . ? 12.761 14.224 4.827 1.00 6.26 ? 7 DM2 A C17 1 HETATM 145 O O17 . DM2 A 2 . ? 11.570 14.889 4.797 1.00 5.50 ? 7 DM2 A O17 1 HETATM 146 C C18 . DM2 A 2 . ? 13.985 14.924 4.822 1.00 6.30 ? 7 DM2 A C18 1 HETATM 147 C C19 . DM2 A 2 . ? 14.007 16.349 4.853 1.00 7.01 ? 7 DM2 A C19 1 HETATM 148 O O19 . DM2 A 2 . ? 12.853 16.988 4.878 1.00 7.56 ? 7 DM2 A O19 1 HETATM 149 C C20 . DM2 A 2 . ? 15.244 17.040 4.865 1.00 6.91 ? 7 DM2 A C20 1 HETATM 150 C C21 . DM2 A 2 . ? 20.164 17.131 4.894 1.00 8.10 ? 7 DM2 A C21 1 HETATM 151 C "C1'" . DM2 A 2 . ? 15.508 9.325 6.325 1.00 6.55 ? 7 DM2 A "C1'" 1 HETATM 152 C "C2'" . DM2 A 2 . ? 16.662 9.744 7.308 1.00 6.83 ? 7 DM2 A "C2'" 1 HETATM 153 C "C3'" . DM2 A 2 . ? 15.986 9.896 8.700 1.00 7.98 ? 7 DM2 A "C3'" 1 HETATM 154 N "N3'" . DM2 A 2 . ? 17.069 10.218 9.702 1.00 6.98 ? 7 DM2 A "N3'" 1 HETATM 155 C "C4'" . DM2 A 2 . ? 15.236 8.613 9.132 1.00 8.50 ? 7 DM2 A "C4'" 1 HETATM 156 O "O4'" . DM2 A 2 . ? 16.324 7.597 9.201 1.00 10.24 ? 7 DM2 A "O4'" 1 HETATM 157 C "C5'" . DM2 A 2 . ? 14.150 8.254 8.082 1.00 8.55 ? 7 DM2 A "C5'" 1 HETATM 158 O "O5'" . DM2 A 2 . ? 14.828 8.116 6.752 1.00 7.51 ? 7 DM2 A "O5'" 1 HETATM 159 C "C6'" . DM2 A 2 . ? 13.470 6.895 8.316 1.00 8.74 ? 7 DM2 A "C6'" 1 HETATM 1 O "O5'" . DC B 1 1 ? 7.778 18.476 3.678 1.00 7.86 ? 1 DC B "O5'" 1 HETATM 2 C "C5'" . DC B 1 1 ? 6.817 18.224 2.748 1.00 6.24 ? 1 DC B "C5'" 1 HETATM 3 C "C4'" . DC B 1 1 ? 6.773 16.811 2.293 1.00 5.98 ? 1 DC B "C4'" 1 HETATM 4 O "O4'" . DC B 1 1 ? 7.921 16.522 1.419 1.00 6.14 ? 1 DC B "O4'" 1 HETATM 5 C "C3'" . DC B 1 1 ? 6.867 15.730 3.414 1.00 6.53 ? 1 DC B "C3'" 1 HETATM 6 O "O3'" . DC B 1 1 ? 6.116 14.616 3.075 1.00 6.29 ? 1 DC B "O3'" 1 HETATM 7 C "C2'" . DC B 1 1 ? 8.413 15.470 3.547 1.00 6.31 ? 1 DC B "C2'" 1 HETATM 8 C "C1'" . DC B 1 1 ? 8.754 15.480 1.975 1.00 5.93 ? 1 DC B "C1'" 1 HETATM 9 N N1 . DC B 1 1 ? 10.170 15.949 1.870 1.00 5.05 ? 1 DC B N1 1 HETATM 10 C C2 . DC B 1 1 ? 11.130 14.963 1.746 1.00 4.84 ? 1 DC B C2 1 HETATM 11 O O2 . DC B 1 1 ? 10.868 13.780 1.707 1.00 5.09 ? 1 DC B O2 1 HETATM 12 N N3 . DC B 1 1 ? 12.435 15.400 1.687 1.00 5.54 ? 1 DC B N3 1 HETATM 13 C C4 . DC B 1 1 ? 12.833 16.726 1.719 1.00 5.26 ? 1 DC B C4 1 HETATM 14 N N4 . DC B 1 1 ? 14.147 17.012 1.627 1.00 4.81 ? 1 DC B N4 1 HETATM 15 C C5 . DC B 1 1 ? 11.804 17.695 1.821 1.00 5.30 ? 1 DC B C5 1 HETATM 16 C C6 . DC B 1 1 ? 10.554 17.279 1.958 1.00 5.05 ? 1 DC B C6 1 HETATM 17 P P . DG B 1 2 ? 4.961 14.060 4.022 1.00 7.99 ? 2 DG B P 1 HETATM 18 O OP1 . DG B 1 2 ? 4.212 13.023 3.306 1.00 8.14 ? 2 DG B OP1 1 HETATM 19 O OP2 . DG B 1 2 ? 4.358 15.173 4.666 1.00 7.35 ? 2 DG B OP2 1 HETATM 20 O "O5'" . DG B 1 2 ? 5.744 13.373 5.330 1.00 7.32 ? 2 DG B "O5'" 1 HETATM 21 C "C5'" . DG B 1 2 ? 6.507 12.243 4.964 1.00 7.48 ? 2 DG B "C5'" 1 HETATM 22 C "C4'" . DG B 1 2 ? 7.327 11.857 6.187 1.00 7.87 ? 2 DG B "C4'" 1 HETATM 23 O "O4'" . DG B 1 2 ? 8.456 12.768 6.262 1.00 7.43 ? 2 DG B "O4'" 1 HETATM 24 C "C3'" . DG B 1 2 ? 6.595 11.974 7.547 1.00 8.55 ? 2 DG B "C3'" 1 HETATM 25 O "O3'" . DG B 1 2 ? 6.957 10.855 8.310 1.00 10.90 ? 2 DG B "O3'" 1 HETATM 26 C "C2'" . DG B 1 2 ? 7.165 13.244 8.174 1.00 7.93 ? 2 DG B "C2'" 1 HETATM 27 C "C1'" . DG B 1 2 ? 8.643 13.150 7.621 1.00 7.17 ? 2 DG B "C1'" 1 HETATM 28 N N9 . DG B 1 2 ? 9.413 14.334 7.752 1.00 6.69 ? 2 DG B N9 1 HETATM 29 C C8 . DG B 1 2 ? 9.062 15.609 7.786 1.00 6.57 ? 2 DG B C8 1 HETATM 30 N N7 . DG B 1 2 ? 10.071 16.456 7.959 1.00 6.58 ? 2 DG B N7 1 HETATM 31 C C5 . DG B 1 2 ? 11.144 15.614 8.047 1.00 6.17 ? 2 DG B C5 1 HETATM 32 C C6 . DG B 1 2 ? 12.531 15.881 8.216 1.00 6.35 ? 2 DG B C6 1 HETATM 33 O O6 . DG B 1 2 ? 13.026 17.041 8.332 1.00 6.06 ? 2 DG B O6 1 HETATM 34 N N1 . DG B 1 2 ? 13.368 14.835 8.249 1.00 5.56 ? 2 DG B N1 1 HETATM 35 C C2 . DG B 1 2 ? 12.867 13.593 8.129 1.00 5.57 ? 2 DG B C2 1 HETATM 36 N N2 . DG B 1 2 ? 13.630 12.599 8.113 1.00 5.23 ? 2 DG B N2 1 HETATM 37 N N3 . DG B 1 2 ? 11.603 13.206 7.953 1.00 6.00 ? 2 DG B N3 1 HETATM 38 C C4 . DG B 1 2 ? 10.800 14.309 7.909 1.00 6.01 ? 2 DG B C4 1 HETATM 39 P P . DA B 1 3 ? 5.993 10.024 9.270 1.00 12.21 ? 3 DA B P 1 HETATM 40 O OP1 . DA B 1 3 ? 5.128 9.353 8.406 1.00 11.83 ? 3 DA B OP1 1 HETATM 41 O OP2 . DA B 1 3 ? 5.459 10.921 10.304 1.00 12.58 ? 3 DA B OP2 1 HETATM 42 O "O5'" . DA B 1 3 ? 6.951 8.840 9.873 1.00 10.19 ? 3 DA B "O5'" 1 HETATM 43 C "C5'" . DA B 1 3 ? 7.573 8.082 8.820 1.00 8.81 ? 3 DA B "C5'" 1 HETATM 44 C "C4'" . DA B 1 3 ? 8.963 7.773 9.453 1.00 8.04 ? 3 DA B "C4'" 1 HETATM 45 O "O4'" . DA B 1 3 ? 9.776 8.961 9.282 1.00 7.20 ? 3 DA B "O4'" 1 HETATM 46 C "C3'" . DA B 1 3 ? 9.049 7.391 10.967 1.00 8.33 ? 3 DA B "C3'" 1 HETATM 47 O "O3'" . DA B 1 3 ? 9.814 6.243 11.064 1.00 8.48 ? 3 DA B "O3'" 1 HETATM 48 C "C2'" . DA B 1 3 ? 9.740 8.553 11.626 1.00 7.64 ? 3 DA B "C2'" 1 HETATM 49 C "C1'" . DA B 1 3 ? 10.588 9.176 10.405 1.00 6.79 ? 3 DA B "C1'" 1 HETATM 50 N N9 . DA B 1 3 ? 10.688 10.588 10.605 1.00 5.78 ? 3 DA B N9 1 HETATM 51 C C8 . DA B 1 3 ? 9.710 11.493 10.646 1.00 5.30 ? 3 DA B C8 1 HETATM 52 N N7 . DA B 1 3 ? 10.115 12.711 10.951 1.00 5.42 ? 3 DA B N7 1 HETATM 53 C C5 . DA B 1 3 ? 11.471 12.566 11.056 1.00 4.78 ? 3 DA B C5 1 HETATM 54 C C6 . DA B 1 3 ? 12.494 13.536 11.379 1.00 4.53 ? 3 DA B C6 1 HETATM 55 N N6 . DA B 1 3 ? 12.237 14.833 11.561 1.00 4.16 ? 3 DA B N6 1 HETATM 56 N N1 . DA B 1 3 ? 13.745 13.050 11.505 1.00 4.88 ? 3 DA B N1 1 HETATM 57 C C2 . DA B 1 3 ? 13.993 11.751 11.292 1.00 4.83 ? 3 DA B C2 1 HETATM 58 N N3 . DA B 1 3 ? 13.113 10.776 11.010 1.00 5.02 ? 3 DA B N3 1 HETATM 59 C C4 . DA B 1 3 ? 11.868 11.275 10.912 1.00 5.07 ? 3 DA B C4 1 HETATM 60 P P . DT B 1 4 ? 10.073 5.382 12.362 1.00 9.53 ? 4 DT B P 1 HETATM 61 O OP1 . DT B 1 4 ? 10.454 4.110 11.856 1.00 9.39 ? 4 DT B OP1 1 HETATM 62 O OP2 . DT B 1 4 ? 9.000 5.576 13.277 1.00 10.29 ? 4 DT B OP2 1 HETATM 63 O "O5'" . DT B 1 4 ? 11.464 5.909 13.081 1.00 8.16 ? 4 DT B "O5'" 1 HETATM 64 C "C5'" . DT B 1 4 ? 12.659 5.622 12.456 1.00 7.70 ? 4 DT B "C5'" 1 HETATM 65 C "C4'" . DT B 1 4 ? 13.718 6.278 13.340 1.00 7.46 ? 4 DT B "C4'" 1 HETATM 66 O "O4'" . DT B 1 4 ? 13.607 7.708 13.301 1.00 8.24 ? 4 DT B "O4'" 1 HETATM 67 C "C3'" . DT B 1 4 ? 13.605 5.884 14.867 1.00 7.47 ? 4 DT B "C3'" 1 HETATM 68 O "O3'" . DT B 1 4 ? 14.873 5.332 15.096 1.00 8.72 ? 4 DT B "O3'" 1 HETATM 69 C "C2'" . DT B 1 4 ? 13.395 7.199 15.592 1.00 6.79 ? 4 DT B "C2'" 1 HETATM 70 C "C1'" . DT B 1 4 ? 13.871 8.244 14.603 1.00 6.89 ? 4 DT B "C1'" 1 HETATM 71 N N1 . DT B 1 4 ? 13.117 9.552 14.608 1.00 7.48 ? 4 DT B N1 1 HETATM 72 C C2 . DT B 1 4 ? 13.906 10.678 14.677 1.00 6.68 ? 4 DT B C2 1 HETATM 73 O O2 . DT B 1 4 ? 15.114 10.625 14.749 1.00 7.19 ? 4 DT B O2 1 HETATM 74 N N3 . DT B 1 4 ? 13.273 11.884 14.701 1.00 6.72 ? 4 DT B N3 1 HETATM 75 C C4 . DT B 1 4 ? 11.893 12.053 14.625 1.00 7.03 ? 4 DT B C4 1 HETATM 76 O O4 . DT B 1 4 ? 11.431 13.210 14.606 1.00 6.61 ? 4 DT B O4 1 HETATM 77 C C5 . DT B 1 4 ? 11.118 10.862 14.529 1.00 7.23 ? 4 DT B C5 1 HETATM 78 C C7 . DT B 1 4 ? 9.620 10.911 14.415 1.00 9.27 ? 4 DT B C7 1 HETATM 79 C C6 . DT B 1 4 ? 11.747 9.691 14.496 1.00 6.96 ? 4 DT B C6 1 HETATM 80 P P . DC B 1 5 ? 15.111 4.446 16.413 1.00 9.64 ? 5 DC B P 1 HETATM 81 O OP1 . DC B 1 5 ? 16.377 3.856 16.186 1.00 11.07 ? 5 DC B OP1 1 HETATM 82 O OP2 . DC B 1 5 ? 13.873 3.877 16.750 1.00 10.32 ? 5 DC B OP2 1 HETATM 83 O "O5'" . DC B 1 5 ? 15.597 5.574 17.528 1.00 9.12 ? 5 DC B "O5'" 1 HETATM 84 C "C5'" . DC B 1 5 ? 16.706 6.280 17.267 1.00 8.39 ? 5 DC B "C5'" 1 HETATM 85 C "C4'" . DC B 1 5 ? 16.619 7.440 18.289 1.00 9.18 ? 5 DC B "C4'" 1 HETATM 86 O "O4'" . DC B 1 5 ? 15.730 8.475 17.768 1.00 8.39 ? 5 DC B "O4'" 1 HETATM 87 C "C3'" . DC B 1 5 ? 16.123 7.073 19.693 1.00 9.33 ? 5 DC B "C3'" 1 HETATM 88 O "O3'" . DC B 1 5 ? 17.000 7.741 20.551 1.00 10.65 ? 5 DC B "O3'" 1 HETATM 89 C "C2'" . DC B 1 5 ? 14.690 7.603 19.776 1.00 9.04 ? 5 DC B "C2'" 1 HETATM 90 C "C1'" . DC B 1 5 ? 14.936 8.884 18.821 1.00 8.15 ? 5 DC B "C1'" 1 HETATM 91 N N1 . DC B 1 5 ? 13.657 9.598 18.443 1.00 7.43 ? 5 DC B N1 1 HETATM 92 C C2 . DC B 1 5 ? 13.857 10.926 18.144 1.00 7.31 ? 5 DC B C2 1 HETATM 93 O O2 . DC B 1 5 ? 14.944 11.461 18.070 1.00 7.35 ? 5 DC B O2 1 HETATM 94 N N3 . DC B 1 5 ? 12.732 11.665 17.874 1.00 7.05 ? 5 DC B N3 1 HETATM 95 C C4 . DC B 1 5 ? 11.456 11.142 17.864 1.00 6.93 ? 5 DC B C4 1 HETATM 96 N N4 . DC B 1 5 ? 10.422 11.973 17.630 1.00 6.28 ? 5 DC B N4 1 HETATM 97 C C5 . DC B 1 5 ? 11.291 9.760 18.197 1.00 7.05 ? 5 DC B C5 1 HETATM 98 C C6 . DC B 1 5 ? 12.393 9.046 18.444 1.00 7.15 ? 5 DC B C6 1 HETATM 99 P P . DG B 1 6 ? 18.089 6.971 21.467 1.00 10.89 ? 6 DG B P 1 HETATM 100 O OP1 . DG B 1 6 ? 19.051 6.489 20.541 1.00 10.22 ? 6 DG B OP1 1 HETATM 101 O OP2 . DG B 1 6 ? 17.283 6.135 22.355 1.00 9.97 ? 6 DG B OP2 1 HETATM 102 O "O5'" . DG B 1 6 ? 18.905 8.159 22.183 1.00 8.85 ? 6 DG B "O5'" 1 HETATM 103 C "C5'" . DG B 1 6 ? 19.810 9.004 21.568 1.00 8.16 ? 6 DG B "C5'" 1 HETATM 104 C "C4'" . DG B 1 6 ? 20.290 10.021 22.614 1.00 8.25 ? 6 DG B "C4'" 1 HETATM 105 O "O4'" . DG B 1 6 ? 19.254 10.909 23.067 1.00 7.74 ? 6 DG B "O4'" 1 HETATM 106 C "C3'" . DG B 1 6 ? 20.802 9.344 23.955 1.00 7.25 ? 6 DG B "C3'" 1 HETATM 107 O "O3'" . DG B 1 6 ? 21.873 10.158 24.296 1.00 7.43 ? 6 DG B "O3'" 1 HETATM 108 C "C2'" . DG B 1 6 ? 19.609 9.406 24.899 1.00 7.09 ? 6 DG B "C2'" 1 HETATM 109 C "C1'" . DG B 1 6 ? 18.890 10.713 24.495 1.00 6.56 ? 6 DG B "C1'" 1 HETATM 110 N N9 . DG B 1 6 ? 17.448 10.623 24.522 1.00 6.36 ? 6 DG B N9 1 HETATM 111 C C8 . DG B 1 6 ? 16.659 9.562 24.462 1.00 6.07 ? 6 DG B C8 1 HETATM 112 N N7 . DG B 1 6 ? 15.363 9.854 24.484 1.00 6.63 ? 6 DG B N7 1 HETATM 113 C C5 . DG B 1 6 ? 15.352 11.213 24.545 1.00 5.88 ? 6 DG B C5 1 HETATM 114 C C6 . DG B 1 6 ? 14.272 12.169 24.589 1.00 6.06 ? 6 DG B C6 1 HETATM 115 O O6 . DG B 1 6 ? 13.044 11.848 24.576 1.00 5.56 ? 6 DG B O6 1 HETATM 116 N N1 . DG B 1 6 ? 14.609 13.457 24.638 1.00 5.52 ? 6 DG B N1 1 HETATM 117 C C2 . DG B 1 6 ? 15.879 13.821 24.691 1.00 5.42 ? 6 DG B C2 1 HETATM 118 N N2 . DG B 1 6 ? 16.223 15.016 24.734 1.00 5.55 ? 6 DG B N2 1 HETATM 119 N N3 . DG B 1 6 ? 16.972 13.034 24.659 1.00 5.36 ? 6 DG B N3 1 HETATM 120 C C4 . DG B 1 6 ? 16.611 11.735 24.592 1.00 5.66 ? 6 DG B C4 1 HETATM 121 C C1 . DM2 B 2 . ? 9.470 12.694 21.299 1.00 7.41 ? 7 DM2 B C1 1 HETATM 122 C C2 . DM2 B 2 . ? 8.759 11.491 21.286 1.00 6.75 ? 7 DM2 B C2 1 HETATM 123 C C3 . DM2 B 2 . ? 9.451 10.266 21.315 1.00 7.59 ? 7 DM2 B C3 1 HETATM 124 C C4 . DM2 B 2 . ? 10.857 10.243 21.366 1.00 6.83 ? 7 DM2 B C4 1 HETATM 125 O O4 . DM2 B 2 . ? 11.532 9.022 21.387 1.00 7.14 ? 7 DM2 B O4 1 HETATM 126 C C5 . DM2 B 2 . ? 11.567 11.464 21.379 1.00 6.85 ? 7 DM2 B C5 1 HETATM 127 C C6 . DM2 B 2 . ? 12.974 11.511 21.392 1.00 6.71 ? 7 DM2 B C6 1 HETATM 128 O O6 . DM2 B 2 . ? 13.709 10.359 21.424 1.00 6.75 ? 7 DM2 B O6 1 HETATM 129 C C7 . DM2 B 2 . ? 13.711 12.724 21.378 1.00 6.33 ? 7 DM2 B C7 1 HETATM 130 C C8 . DM2 B 2 . ? 15.112 12.756 21.411 1.00 6.14 ? 7 DM2 B C8 1 HETATM 131 O O8 . DM2 B 2 . ? 15.888 11.625 21.407 1.00 4.89 ? 7 DM2 B O8 1 HETATM 132 C C9 . DM2 B 2 . ? 15.789 13.991 21.437 1.00 5.85 ? 7 DM2 B C9 1 HETATM 133 C C10 . DM2 B 2 . ? 17.281 13.925 21.409 1.00 6.85 ? 7 DM2 B C10 1 HETATM 134 O O10 . DM2 B 2 . ? 17.523 13.328 20.072 1.00 5.90 ? 7 DM2 B O10 1 HETATM 135 C C11 . DM2 B 2 . ? 18.052 15.209 21.672 1.00 6.15 ? 7 DM2 B C11 1 HETATM 136 C C12 . DM2 B 2 . ? 17.320 16.351 20.836 1.00 6.95 ? 7 DM2 B C12 1 HETATM 137 O O12 . DM2 B 2 . ? 17.167 16.309 19.360 1.00 6.29 ? 7 DM2 B O12 1 HETATM 138 C C13 . DM2 B 2 . ? 18.056 17.651 21.124 1.00 7.62 ? 7 DM2 B C13 1 HETATM 139 O O13 . DM2 B 2 . ? 17.733 18.377 22.241 1.00 7.69 ? 7 DM2 B O13 1 HETATM 140 C C14 . DM2 B 2 . ? 19.116 18.095 20.162 1.00 8.08 ? 7 DM2 B C14 1 HETATM 141 O O14 . DM2 B 2 . ? 19.729 19.303 20.525 1.00 9.67 ? 7 DM2 B O14 1 HETATM 142 C C15 . DM2 B 2 . ? 15.855 16.488 21.429 1.00 6.40 ? 7 DM2 B C15 1 HETATM 143 C C16 . DM2 B 2 . ? 15.113 15.191 21.396 1.00 6.24 ? 7 DM2 B C16 1 HETATM 144 C C17 . DM2 B 2 . ? 13.696 15.159 21.368 1.00 6.26 ? 7 DM2 B C17 1 HETATM 145 O O17 . DM2 B 2 . ? 13.031 16.350 21.398 1.00 5.50 ? 7 DM2 B O17 1 HETATM 146 C C18 . DM2 B 2 . ? 12.996 13.935 21.373 1.00 6.30 ? 7 DM2 B C18 1 HETATM 147 C C19 . DM2 B 2 . ? 11.571 13.913 21.342 1.00 7.01 ? 7 DM2 B C19 1 HETATM 148 O O19 . DM2 B 2 . ? 10.932 15.067 21.317 1.00 7.56 ? 7 DM2 B O19 1 HETATM 149 C C20 . DM2 B 2 . ? 10.880 12.676 21.330 1.00 6.91 ? 7 DM2 B C20 1 HETATM 150 C C21 . DM2 B 2 . ? 10.789 7.756 21.301 1.00 8.10 ? 7 DM2 B C21 1 HETATM 151 C "C1'" . DM2 B 2 . ? 18.595 12.412 19.870 1.00 6.55 ? 7 DM2 B "C1'" 1 HETATM 152 C "C2'" . DM2 B 2 . ? 18.176 11.258 18.887 1.00 6.83 ? 7 DM2 B "C2'" 1 HETATM 153 C "C3'" . DM2 B 2 . ? 18.024 11.934 17.495 1.00 7.98 ? 7 DM2 B "C3'" 1 HETATM 154 N "N3'" . DM2 B 2 . ? 17.702 10.851 16.493 1.00 6.98 ? 7 DM2 B "N3'" 1 HETATM 155 C "C4'" . DM2 B 2 . ? 19.307 12.684 17.063 1.00 8.50 ? 7 DM2 B "C4'" 1 HETATM 156 O "O4'" . DM2 B 2 . ? 20.323 11.596 16.994 1.00 10.24 ? 7 DM2 B "O4'" 1 HETATM 157 C "C5'" . DM2 B 2 . ? 19.666 13.770 18.113 1.00 8.55 ? 7 DM2 B "C5'" 1 HETATM 158 O "O5'" . DM2 B 2 . ? 19.804 13.092 19.443 1.00 7.51 ? 7 DM2 B "O5'" 1 HETATM 159 C "C6'" . DM2 B 2 . ? 21.025 14.450 17.879 1.00 8.74 ? 7 DM2 B "C6'" 1
spin
Assembly
Assembly ID: 151d_1
Assembly defined by
: Author
PDB ID
:
151d
Experimental method
: X-RAY DIFFRACTION
Resolution
: 1.4 Å
UniProt ID
: N/A
PubMed ID
:
8142363
Ligand 1
:
DM2
Ligand 2
:
DM2
Ligand 3
:
DNA
Download
mmCIF Format
PDB Format
Ligand ID
NUC pairing detail
Ligand Name
Synonyms
Formula
2D structure
DM2
N/A
Doxorubicin
1: (1s,3s)-3,5,12-trihydroxy-3-(hydroxyacetyl)-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2,3,6-trideoxy-alpha-l-lyxo-hexopyranoside; 2: (1s,3s)-3-glycoloyl-3,5,12-trihydroxy-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2,3,6-trideoxy-alpha-l-lyxo-hexopyranoside; 3: 14-hydroxydaunomycin; 4: 14-hydroxydaunorubicine; 5: (8s-cis)-10-((3-amino-2,3,6-trideoxy-alpha-l-lyxo-hexopyranosyl)oxy)-7,8,9,10-tetrahydro-6,8,11-trihydroxy-8-(hydroxyacetyl)-1-methoxy-5,12-naphthacenedione; 6: Adriamycin; 7: Doxorubicinum; 8: Doxorubicine;
"C27 H29 N O11"
DM2
N/A
Doxorubicin
1: (1s,3s)-3,5,12-trihydroxy-3-(hydroxyacetyl)-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2,3,6-trideoxy-alpha-l-lyxo-hexopyranoside; 2: (1s,3s)-3-glycoloyl-3,5,12-trihydroxy-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2,3,6-trideoxy-alpha-l-lyxo-hexopyranoside; 3: 14-hydroxydaunomycin; 4: 14-hydroxydaunorubicine; 5: (8s-cis)-10-((3-amino-2,3,6-trideoxy-alpha-l-lyxo-hexopyranosyl)oxy)-7,8,9,10-tetrahydro-6,8,11-trihydroxy-8-(hydroxyacetyl)-1-methoxy-5,12-naphthacenedione; 6: Adriamycin; 7: Doxorubicinum; 8: Doxorubicine;
"C27 H29 N O11"
DNA
A2:DNA A1:DNA
Deoxyribonucleic acid
N/A
"C11 H8 O4"
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)