Home
Browse
Browse biologically relevant interactions
Browse biologically irrelevant interactions
Browse structures with ligands or proteins only
Search
Ligand
Q-SITE
Download
Statistics
Help
News
Yang Lab
Function Annotation for BL5238
3D View
Ligand Information
Binding Information
The structure is too big. Click
here
to show 3D view, it may take a long time or fail, depending on the status of the server.
Binding residues
Residue number in mmCIF file:
B12:
Y302
B46:
A43 L44
B50:
S23 R72 S73 E74 S75 S76 I77 E78 S79 A82 R83
C28:
A6
C44:
S10 D11 R12 L14 Q15 N30
D11:
A90 S96 L100 G101 E102 I103 L104 N105 Y106 Y107 T108 H109 W110 A111 Y176 R177 T179 F220 S221 V222 R223 H230
D12:
P81 C84 S133 Y134 A135 P136 P141 P142 K143 K144 A148 T152 V168 G187 G188 Y189 I190 S191 F193
D46:
F55 F116 T117 F118 L119 F120 V154 I155 W156 D157 S162 S163 C164 T165 M166 I210 L211 G212 F213
D50:
A16 K41 N42
E43:
G1 A2 Q3 V4 S5 S6
E44:
K57 D58 V59 L60 I61 P65 M66 L67
E49:
E13
E50:
K42 D44 F45 S46
Residue number in PDB file:
112:
Y302
146:
A43 L44
150:
S23 R72 S73 E74 S75 S76 I77 E78 S79 A82 R83
228:
A6
244:
S10 D11 R12 L14 Q15 N30
311:
A90 S96 L100 G101 E102 I103 L104 N105 Y106 Y107 T108 H109 W110 A111 Y176 R177 T179 F220 S221 V222 R223 H230
312:
P81 C84 S133 Y134 A135 P136 P141 P142 K143 K144 A148 T152 V168 G187 G188 Y189 I190 S191 F193
346:
F55 F116 T117 F118 L119 F120 V154 I155 W156 D157 S162 S163 C164 T165 M166 I210 L211 G212 F213
350:
A16 K41 N42
443:
G2 A3 Q4 V5 S6 S7
444:
K58 D59 V60 L61 I62 P66 M67 L68
449:
E14
450:
K43 D45 F46 S47
Receptor
Assembly ID: 1ar7_6
Stoichiometry type
: Hetero 120-mer -A30B30C30D30
Assembly defined by
: crystal asymmetric unit
PDB ID
:
1ar7
Experimental method
: X-RAY DIFFRACTION
Resolution
: 2.9 Å
Other biological units from the same PDB ID
: 1ar7_1,1ar7_2,1ar7_3,1ar7_4,1ar7_5
UniProt ID
:
P03300
PubMed ID
:
9253417
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
Download
mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)