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Yang Lab
Function Annotation for BL52062
3D View
Ligand Information
Binding Information
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Binding residues
Residue numbering in mmCIF file:
O7:
F74 D77 H79 D81 D87 E88
Residue numbering in PDB file:
O7:
F81 D84 H86 D88 D94 E95
Receptor
Assembly ID: 2gtl_1
Stoichiometry type
: Hetero 180-mer -A36B36C36D36E12F12G12
Assembly defined by
: complete point assembly
PDB ID
:
2gtl
Experimental method
: X-RAY DIFFRACTION
Resolution
: 3.5 Å
Other biological units from the same PDB ID
: 2gtl_2,2gtl_3,2gtl_4
UniProt ID
:
Q9GV76
Q2I743
P11069
Q2I742
O61233
P13579
P02218
PubMed ID
:
16843898
Ligand
Ligand ID
:
CA
Ligand name
: Calcium(2+)
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
Synonyms
Formula
2D structure
CA
Calcium(2+)
1. Calcium, doubly charged positive ion; 2. Ca(2+); 3. Calcium ion; 4. Ca2+; 5. Calcium(ii) cation; 6. Calcium(2+) ion; 7. Calcium;
Ca
Binding affinity
Experimental affinity
N/A
Predicted affinity
N/A,
show detail
Software
Raw score
Predicted affinity
90% confidence interval
X-Score
N/A (log(Ka))
N/A
[N/A,N/A]
ITScore
N/A (kcal/mol)
N/A
[N/A,N/A]
Vina
N/A (kcal/mol)
N/A
[N/A,N/A]
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)