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Yang Lab
Function Annotation for BL47347
3D View
Ligand Information
Binding Information
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Binding residues
Residue numbering in mmCIF file:
B2:
T5 G6 A7 E8
B23:
E207 F211 D217 S221
B24:
M10 T418 R420
D23:
G26 A27 R28 Y31
Residue numbering in PDB file:
12:
T5 G6 A7 E8
123:
E207 F211 D217 S221
124:
M10 T418 R420
323:
G26 A27 R28 Y31
Receptor
Assembly ID: 2bpa_1
Stoichiometry type
: Hetero 180-mer -A60B60C60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
2bpa
Experimental method
: X-RAY DIFFRACTION
Resolution
: 3.0 Å
Other biological units from the same PDB ID
: 2bpa_2,2bpa_3,2bpa_4,2bpa_5
UniProt ID
:
P03641
P69592
P03643
PubMed ID
:
1370343
Ligand
Ligand ID
:
DNA
Ligand name
: Deoxyribonucleic acid
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
NUC pairing details
Name
DNA
A23:DNA
Deoxyribonucleic acid
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
1383.75
Surface area of complex(A
2
)
1383.75
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)