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Yang Lab
Function Annotation for BL44403
3D View
Ligand Information
Binding Information
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Binding residues
Residue numbering in mmCIF file:
C56:
V29 K43 T45 C46 S47 T59 K61 E63 Y85 N87
D60:
R49 S51 S52 N55 K57
Residue numbering in PDB file:
A56:
V29 K43 T45 C46 S47 T59 K61 E63 Y85 N87
B60:
R49 S51 S52 N55 K57
Receptor
Assembly ID: 1zdj_1
Stoichiometry type
: Homo 180-mer -A180
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1zdj
Experimental method
: X-RAY DIFFRACTION
Resolution
: 2.9 Å
Other biological units from the same PDB ID
: 1zdj_2,1zdj_3,1zdj_4,1zdj_5,1zdj_6
UniProt ID
:
P03612
PubMed ID
:
9917072
7523953
8254664
Ligand
Ligand ID
:
RNA
Ligand name
: Ribonucleic acid
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
NUC pairing details
Name
RNA
A56:RNA
Ribonucleic acid
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)