Home
Browse
Browse biologically relevant interactions
Browse biologically irrelevant interactions
Browse structures with ligands or proteins only
Search
Ligand
Q-SITE
Download
Statistics
Help
News
Yang Lab
Function Annotation for BL4185
3D View
Ligand Information
Binding Information
The structure is too big. Click
here
to show 3D view, it may take a long time or fail, depending on the status of the server.
Binding residues
Residue number in mmCIF file:
C57:
V29 K43 T45 C46 S47 R49 S51 S59 K61 E63 Y85 N87
D56:
T45 S47 R49 S51 S52 N55 K57 S59 K61 T91
Residue number in PDB file:
A57:
V29 K43 T45 C46 S47 R49 S51 S59 K61 E63 Y85 N87
B56:
T45 S47 R49 S51 S52 N55 K57 S59 K61 T91
Receptor
Assembly ID: 1aq3_1
Stoichiometry type
: Homo 180-mer -A180
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1aq3
Experimental method
: X-RAY DIFFRACTION
Resolution
: 2.8 Å
Other biological units from the same PDB ID
: 1aq3_2,1aq3_3,1aq3_4,1aq3_5,1aq3_6
UniProt ID
:
P03612
PubMed ID
:
9469847
Ligand
Ligand ID
:
RNA
Ligand name
: Ribonucleic acid
Biological relevance
: Relevant
Download
mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
NUC pairing details
Name
RNA
A57:RNA
Ribonucleic acid
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)