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Yang Lab
Function Annotation for BL3609
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
B1:
S23 R72 S73 E74 S75 S76 I77 E78 S79 F80 F81 A82 R83
B2:
A43 L44
B41:
Y302
C21:
S10 D11 L14 Q15 N30
C29:
A6
C49:
V32 V33 A34 Y35 G36 F193 P194 H195
D1:
K41 N42 L225
D2:
F55 F116 T117 F118 L119 F120 V132 V154 I155 W156 D157 S162 S163 C164 T165 M166 I210 L211 G212
D41:
D79 D80 P81 V132 S133 Y134 A135 P141 P142 K143 K144 A148 T152 H153 M166 V168 G188 Y189 I190 S191 V192 F193
D45:
M44 A90 S96 T98 M99 L100 G101 E102 I103 L104 N105 Y106 H109 W110 A111 Y176 R177 T179 F220 S221 V222 R223
E1:
D44 F45 S46
E21:
K57 D58 V59 L60 I61 P65 M66 L67
E25:
G1 A2 Q3 V4 S5 S6
E48:
T23 I24 N25 Y26 T27
E49:
S50 K51 F52 E54 P55
E5:
H12 E13
Residue number in PDB file:
11:
S23 R72 S73 E74 S75 S76 I77 E78 S79 F80 F81 A82 R83
12:
A43 L44
141:
Y302
221:
S10 D11 L14 Q15 N30
229:
A6
249:
V32 V33 A34 Y35 G36 F193 P194 H195
31:
K41 N42 L225
32:
F55 F116 T117 F118 L119 F120 V132 V154 I155 W156 D157 S162 S163 C164 T165 M166 I210 L211 G212
341:
D79 D80 P81 V132 S133 Y134 A135 P141 P142 K143 K144 A148 T152 H153 M166 V168 G188 Y189 I190 S191 V192 F193
345:
M44 A90 S96 T98 M99 L100 G101 E102 I103 L104 N105 Y106 H109 W110 A111 Y176 R177 T179 F220 S221 V222 R223
41:
D45 F46 S47
421:
K58 D59 V60 L61 I62 P66 M67 L68
425:
G2 A3 Q4 V5 S6 S7
448:
T24 I25 N26 Y27 T28
449:
S51 K52 F53 E55 P56
45:
H13 E14
Receptor
Assembly ID: 1al2_6
Stoichiometry type
: Hetero 120-mer -A30B30C30D30
Assembly defined by
: crystal asymmetric unit
PDB ID
:
1al2
Experimental method
: X-RAY DIFFRACTION
Resolution
: 2.9 Å
Other biological units from the same PDB ID
: 1al2_1,1al2_2,1al2_3,1al2_4,1al2_5
UniProt ID
:
P03300
PubMed ID
:
9253417
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
Download
mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)