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Yang Lab
Function Annotation for BL35243
3D View
Ligand Information
Binding Information
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Binding residues
Residue numbering in mmCIF file:
E50:
W22 D25 E27 N28 D29 D35 E36
Residue numbering in PDB file:
550:
W132 D135 E137 N138 D139 D145 E146
Receptor
Assembly ID: 1v9u_1
Stoichiometry type
: Hetero 240-mer -A60B60C60D60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1v9u
Experimental method
: X-RAY DIFFRACTION
Resolution
: 3.6 Å
Other biological units from the same PDB ID
: 1v9u_2,1v9u_3,1v9u_4,1v9u_5,1v9u_6
UniProt ID
:
P98155
P04936
PubMed ID
:
15064754
Ligand
Ligand ID
:
CA
Ligand name
: Calcium(2+)
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
Synonyms
Formula
2D structure
CA
Calcium(2+)
1. Calcium, doubly charged positive ion; 2. Ca(2+); 3. Calcium ion; 4. Ca2+; 5. Calcium(ii) cation; 6. Calcium(2+) ion; 7. Calcium;
Ca
Binding affinity
Experimental affinity
N/A
Predicted affinity
N/A,
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Software
Raw score
Predicted affinity
90% confidence interval
X-Score
N/A (log(Ka))
N/A
[N/A,N/A]
ITScore
N/A (kcal/mol)
N/A
[N/A,N/A]
Vina
N/A (kcal/mol)
N/A
[N/A,N/A]
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)