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Yang Lab
Function Annotation for BL352340
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
P27:
P48 T49 V50 P52 D55 L359 T616 T619 M623 N634 D635 Y636 L637 S638 R666 H763 R862 F913
Q27:
A20 S21 L24 Q30 F31 R33 A34 D36 T37 Y38 G42 F45 R46 N47 T49
R27:
M872
Residue number in PDB file:
D27:
P48 T49 V50 P52 D55 L359 T616 T619 M623 N634 D635 Y636 L637 S638 R666 H763 R862 F913
E27:
A20 S21 L24 Q30 F31 R33 A34 D36 T37 Y38 G42 F45 R46 N47 T49
F27:
M872
Receptor
Assembly ID: 7rd1_1
Stoichiometry type
: Hetero 1200-mer -A720B238C120D60E60F1G1
Assembly defined by
: complete icosahedral assembly
PDB ID
:
7rd1
Experimental method
: ELECTRON MICROSCOPY
Resolution
: 3.07 Å
Other biological units from the same PDB ID
: 7rd1_2,7rd1_3,7rd1_4,7rd1_5
UniProt ID
:
G9G854
G9G860
G9G843
G9G849
G9G848
G9G853
PubMed ID
:
34851659
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)