Home
Browse
Browse biologically relevant interactions
Browse biologically irrelevant interactions
Browse structures with ligands or proteins only
Search
Ligand
Q-SITE
Download
Statistics
Help
News
Yang Lab
Function Annotation for BL352324
3D View
Ligand Information
Binding Information
The structure is too big. Click
here
to show 3D view, it may take a long time or fail, depending on the status of the server.
Binding residues
Residue number in mmCIF file:
M7:
M872 G873
N7:
G17 Q18 D19 P48 V50 P52 D55 T619 N634 D635 Y636 L637 S638 R666 G667 R862 P864 S871 A874 T876 E911 F913
O7:
D19 A20 S21 G27 V29 Q30 A32 R33 A34 T37 Y38 G42 N43 F45 R46 N47
Residue number in PDB file:
A7:
M872 G873
B7:
G17 Q18 D19 P48 V50 P52 D55 T619 N634 D635 Y636 L637 S638 R666 G667 R862 P864 S871 A874 T876 E911 F913
C7:
D19 A20 S21 G27 V29 Q30 A32 R33 A34 T37 Y38 G42 N43 F45 R46 N47
Receptor
Assembly ID: 7rd1_1
Stoichiometry type
: Hetero 1200-mer -A720B238C120D60E60F1G1
Assembly defined by
: complete icosahedral assembly
PDB ID
:
7rd1
Experimental method
: ELECTRON MICROSCOPY
Resolution
: 3.07 Å
Other biological units from the same PDB ID
: 7rd1_2,7rd1_3,7rd1_4,7rd1_5
UniProt ID
:
G9G854
G9G860
G9G843
G9G849
G9G848
G9G853
PubMed ID
:
34851659
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
Download
mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)