Home
Browse
Browse biologically relevant interactions
Browse biologically irrelevant interactions
Browse structures with ligands or proteins only
Search
Ligand
Q-SITE
Download
Statistics
Help
News
Yang Lab
Function Annotation for BL33710
3D View
Ligand Information
Binding Information
The structure is too big. Click
here
to show 3D view, it may take a long time or fail, depending on the status of the server.
Binding residues
Residue numbering in mmCIF file:
A2:
Y205 N265 L266
C2:
D144 D147
Residue numbering in PDB file:
A2:
Y199 N259 L260
C2:
D138 D141
Receptor
Assembly ID: 1smv_1
Stoichiometry type
: Hetero 180-mer -A178B2
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1smv
Experimental method
: X-RAY DIFFRACTION
Resolution
: 3.0 Å
Other biological units from the same PDB ID
: 1smv_2,1smv_3,1smv_4,1smv_5,1smv_6
UniProt ID
:
Q9EB06
PubMed ID
:
8589997
Ligand
Ligand ID
:
CA
Ligand name
: Calcium(2+)
Biological relevance
: Relevant
Download
mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
Synonyms
Formula
2D structure
CA
Calcium(2+)
1. Calcium, doubly charged positive ion; 2. Ca(2+); 3. Calcium ion; 4. Ca2+; 5. Calcium(ii) cation; 6. Calcium(2+) ion; 7. Calcium;
Ca
Binding affinity
Experimental affinity
N/A
Predicted affinity
N/A,
show detail
Software
Raw score
Predicted affinity
90% confidence interval
X-Score
N/A (log(Ka))
N/A
[N/A,N/A]
ITScore
N/A (kcal/mol)
N/A
[N/A,N/A]
Vina
N/A (kcal/mol)
N/A
[N/A,N/A]
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)