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Yang Lab
Function Annotation for BL30312
3D View
Ligand Information
Binding Information
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Binding residues
Residue numbering in mmCIF file:
A34:
I104 N105 T216 N219 I266
Residue numbering in PDB file:
134:
I104 N105 T216 N219 I266
Receptor
Assembly ID: 1rmu_1
Stoichiometry type
: Hetero 240-mer -A60B60C60D60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1rmu
Experimental method
: X-RAY DIFFRACTION
Resolution
: 3.0 Å
Other biological units from the same PDB ID
: 1rmu_2,1rmu_3,1rmu_4,1rmu_5,1rmu_6
UniProt ID
:
P03303
PubMed ID
:
2544734
Ligand
Ligand ID
:
TRS
Ligand name
: Htris
FDA approved drug
: yes
Biological relevance
: Irrelevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
Synonyms
Formula
2D structure
TRS
Htris
1. 1,3-dihydroxy-2-(hydroxymethyl)propan-2-aminium; 2. 2-amino-2-hydroxymethyl-propane-1,3-diol;
"C4 H12 N O3"
Binding affinity
Experimental affinity
N/A
Predicted affinity
N/A,
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Software
Raw score
Predicted affinity
90% confidence interval
X-Score
N/A (log(Ka))
N/A
[N/A,N/A]
ITScore
N/A (kcal/mol)
N/A
[N/A,N/A]
Vina
N/A (kcal/mol)
N/A
[N/A,N/A]
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)