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Yang Lab
Function Annotation for BL30193
3D View
Ligand Information
Binding Information
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Binding residues
Residue numbering in mmCIF file:
A51:
S141
A52:
S141
A53:
S141
A54:
S141
A55:
S141
Residue numbering in PDB file:
151:
S141
152:
S141
153:
S141
154:
S141
155:
S141
Receptor
Assembly ID: 1rhi_1
Stoichiometry type
: Hetero 240-mer -A60B60C60D60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1rhi
Experimental method
: X-RAY DIFFRACTION
Resolution
: 3.0 Å
Other biological units from the same PDB ID
: 1rhi_2,1rhi_3,1rhi_4,1rhi_5,1rhi_6
UniProt ID
:
Q82081
PubMed ID
:
8939746
Ligand
Ligand ID
:
CA
Ligand name
: Calcium(2+)
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
Synonyms
Formula
2D structure
CA
Calcium(2+)
1. Calcium, doubly charged positive ion; 2. Ca(2+); 3. Calcium ion; 4. Ca2+; 5. Calcium(ii) cation; 6. Calcium(2+) ion; 7. Calcium;
Ca
Binding affinity
Experimental affinity
N/A
Predicted affinity
N/A,
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Software
Raw score
Predicted affinity
90% confidence interval
X-Score
N/A (log(Ka))
N/A
[N/A,N/A]
ITScore
N/A (kcal/mol)
0.32 mM
[0.35 uM,285.76 mM]
Vina
N/A (kcal/mol)
N/A
[N/A,N/A]
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
172.96
Surface area of complex(A
2
)
172.96
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)