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Yang Lab
Function Annotation for BL300858
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
A27:
I1 E2 I4 I5 G32 T34 S55 L58 E60 D116 T183 P185 K244 H245 P251
B27:
C32 C33 Y35
C26:
C27
C27:
D18 S20 S21 P23 A24 L25 P26 C27 Q39 V40 R41 N42 E45 Q48 V49
C28:
D18
C30:
G1 V2
Residue number in PDB file:
A27:
I1 E2 I4 I5 G32 T34 S55 L58 E60 D116 T183 P185 K244 H245 P251
B27:
C32 C33 Y35
C26:
C27
C27:
D18 S20 S21 P23 A24 L25 P26 C27 Q39 V40 R41 N42 E45 Q48 V49
C28:
D18
C30:
G1 V2
Receptor
Assembly ID: 6wdt_1
Stoichiometry type
: Hetero 300-mer -A60B60C60D60E60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
6wdt
Experimental method
: ELECTRON MICROSCOPY
Resolution
: 3.1 Å
Other biological units from the same PDB ID
: 6wdt_2,6wdt_3,6wdt_4,6wdt_5
UniProt ID
:
A0A097BW12
J9Z449
PubMed ID
:
32620559
Ligand
Ligand ID
:
III
Ligand name
: Peptide
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
III
Peptide
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
3409.38
Surface area of complex(A
2
)
3409.38
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)