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Yang Lab
Function Annotation for BL25545
3D View
Ligand Information
Binding Information
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Binding residues
Residue numbering in mmCIF file:
C29:
M1 E2 T3 N4 K7
C43:
T124 M125 S126 R180 P190 V192 I350
Residue numbering in PDB file:
229:
M1 E2 T3 N4 K7
243:
T124 M125 S126 R180 P190 V192 I350
Receptor
Assembly ID: 1pgl_1
Stoichiometry type
: Hetero 120-mer -A60B60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1pgl
Experimental method
: X-RAY DIFFRACTION
Resolution
: 2.8 Å
Other biological units from the same PDB ID
: 1pgl_2,1pgl_3,1pgl_4,1pgl_5,1pgl_6
UniProt ID
:
P23009
PubMed ID
:
14517057
Ligand
Ligand ID
:
RNA
Ligand name
: Ribonucleic acid
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
NUC pairing details
Name
RNA
A43:RNA
Ribonucleic acid
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)