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Yang Lab
Function Annotation for BL23879
3D View
Ligand Information
Binding Information
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Binding residues
Residue numbering in mmCIF file:
G26:
R191
G27:
R191
G28:
R191
G29:
R191
G30:
R191
Residue numbering in PDB file:
G26:
R294
G27:
R294
G28:
R294
G29:
R294
G30:
R294
Receptor
Assembly ID: 1ohg_1
Stoichiometry type
: Homo 420-mer -A420
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1ohg
Experimental method
: X-RAY DIFFRACTION
Resolution
: 3.45 Å
Other biological units from the same PDB ID
: 1ohg_2,1ohg_3,1ohg_4,1ohg_5,1ohg_6
UniProt ID
:
P49861
PubMed ID
:
14643655
10930835
11000116
10089306
Ligand
Ligand ID
:
CL
Ligand name
: Chloride
Biological relevance
: Irrelevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
Synonyms
Formula
2D structure
CL
Chloride
1. Chloride(1-); 2. Cl(-); 3. Chlorine anion; 4. Chloride ion; 5. Cl-;
Cl
Binding affinity
Experimental affinity
N/A
Predicted affinity
N/A,
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Software
Raw score
Predicted affinity
90% confidence interval
X-Score
N/A (log(Ka))
N/A
[N/A,N/A]
ITScore
N/A (kcal/mol)
N/A
[N/A,N/A]
Vina
N/A (kcal/mol)
N/A
[N/A,N/A]
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)