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Yang Lab
Function Annotation for BL218537
3D View
Ligand Information
Binding Information
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Binding residues
Residue numbering in mmCIF file:
A8:
R202 C203 N205
B10:
K18 Y19
B6:
M15 T17 W21
B8:
R55 A56 Y58 R68
Residue numbering in PDB file:
A8:
R202 C203 N205
B10:
K18 Y19
B6:
M15 T17 W21
B8:
R55 A56 Y58 R68
Receptor
Assembly ID: 5mjv_1
Stoichiometry type
: Hetero 180-mer -A60B60C60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
5mjv
Experimental method
: X-RAY DIFFRACTION
Resolution
: 3.09 Å
Other biological units from the same PDB ID
: 5mjv_2,5mjv_3,5mjv_4,5mjv_5
UniProt ID
:
Q66578
PubMed ID
:
28232749
Ligand
Ligand ID
:
RNA
Ligand name
: Ribonucleic acid
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
NUC pairing details
Name
RNA
D8:RNA
Ribonucleic acid
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
1465.13
Surface area of complex(A
2
)
1465.13
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)