Function Annotation for BL21806




                                                                                          Spin

Receptor

Assembly ID: 1nf7_2

Stoichiometry type: Homo 4-mer -A4
Assembly defined by: Author
PDB ID: 1nf7
Experimental method: X-RAY DIFFRACTION
Resolution: 2.65 Å
UniProt ID: P12268
PubMed ID: N/A

Ligand

Ligand ID: MYD
Ligand name: {[5-(6-amino-purin-7-yl)-3,4-dihydroxy-tetrahydro-furan-2-ylmethoxy]-hydroxy-phosphorylmethyl}-phosphonic acid mono-[2-(4-hydroxy-6-methoxy-7-methyl-3-oxo-1,3-dihydro-isobenzofuran-5-yl)-ethyl] ester
Biological relevance: Relevant

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Ligand ID Name SynonymsFormula 2D structure
MYD {[5-(6-amino-purin-7-yl)-3,4-dihydroxy-tetrahydro-furan-2-ylmethoxy]-hydroxy-phosphorylmethyl}-phosphonic acid mono-[2-(4-hydroxy-6-methoxy-7-methyl-3-oxo-1,3-dihydro-isobenzofuran-5-yl)-ethyl] ester "C23 H29 N5 O13 P2" N/A


Binding affinity

Experimental affinity Ki=250 nm, from BindingDB
Predicted affinity 1.54 uM, show detail

Surface area (A2)

Surface area of receptor 78049.45
Surface area of ligand 817.93
Surface area of complex 77852.51
Interface area 507.43
Reference

  • Wei et al, Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions, Genomics, Proteomics & Bioinformatics, 22(1), qzae001, 2024. (PDF)