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Yang Lab
Function Annotation for BL20044
3D View
Ligand Information
Binding Information
data_1mrt_1 # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . LYS A 1 1 ? 0.000 0.000 0.000 1.00 6.15 ? 31 LYS A N 1 ATOM 2 C CA . LYS A 1 1 ? 1.453 0.000 0.000 1.00 4.95 ? 31 LYS A CA 1 ATOM 3 C C . LYS A 1 1 ? 1.959 1.421 0.255 1.00 2.72 ? 31 LYS A C 1 ATOM 4 O O . LYS A 1 1 ? 1.421 2.383 -0.292 1.00 2.64 ? 31 LYS A O 1 ATOM 5 C CB . LYS A 1 1 ? 1.989 -0.621 -1.291 1.00 5.93 ? 31 LYS A CB 1 ATOM 6 C CG . LYS A 1 1 ? 1.411 -2.022 -1.507 1.00 7.38 ? 31 LYS A CG 1 ATOM 7 C CD . LYS A 1 1 ? 2.419 -3.099 -1.101 1.00 8.69 ? 31 LYS A CD 1 ATOM 8 C CE . LYS A 1 1 ? 2.466 -4.224 -2.136 1.00 10.32 ? 31 LYS A CE 1 ATOM 9 N NZ . LYS A 1 1 ? 3.328 -3.843 -3.277 1.00 10.15 ? 31 LYS A NZ 1 ATOM 10 H H . LYS A 1 1 ? -0.338 0.478 0.828 1.00 5.83 ? 31 LYS A H 1 ATOM 11 H HA . LYS A 1 1 ? 1.780 -0.636 0.823 1.00 5.73 ? 31 LYS A HA 1 ATOM 12 N N . SER A 1 2 ? 2.987 1.510 1.085 1.00 2.40 ? 32 SER A N 1 ATOM 13 C CA . SER A 1 2 ? 3.572 2.797 1.419 1.00 2.52 ? 32 SER A CA 1 ATOM 14 C C . SER A 1 2 ? 5.074 2.780 1.131 1.00 2.16 ? 32 SER A C 1 ATOM 15 O O . SER A 1 2 ? 5.622 3.752 0.613 1.00 3.02 ? 32 SER A O 1 ATOM 16 C CB . SER A 1 2 ? 3.315 3.155 2.884 1.00 5.00 ? 32 SER A CB 1 ATOM 17 O OG . SER A 1 2 ? 3.205 4.563 3.078 1.00 6.58 ? 32 SER A OG 1 ATOM 18 H H . SER A 1 2 ? 3.419 0.723 1.526 1.00 3.54 ? 32 SER A H 1 ATOM 19 H HA . SER A 1 2 ? 3.067 3.518 0.775 1.00 2.70 ? 32 SER A HA 1 ATOM 20 N N . CYS A 1 3 ? 5.699 1.665 1.480 1.00 1.15 ? 33 CYS A N 1 ATOM 21 C CA . CYS A 1 3 ? 7.127 1.509 1.266 1.00 0.95 ? 33 CYS A CA 1 ATOM 22 C C . CYS A 1 3 ? 7.402 0.048 0.906 1.00 0.98 ? 33 CYS A C 1 ATOM 23 O O . CYS A 1 3 ? 8.105 -0.235 -0.063 1.00 1.64 ? 33 CYS A O 1 ATOM 24 C CB . CYS A 1 3 ? 7.934 1.957 2.487 1.00 1.09 ? 33 CYS A CB 1 ATOM 25 S SG . CYS A 1 3 ? 9.750 1.849 2.287 1.00 2.35 ? 33 CYS A SG 1 ATOM 26 H H . CYS A 1 3 ? 5.246 0.879 1.901 1.00 1.06 ? 33 CYS A H 1 ATOM 27 H HA . CYS A 1 3 ? 7.394 2.168 0.440 1.00 1.21 ? 33 CYS A HA 1 ATOM 28 N N . CYS A 1 4 ? 6.833 -0.843 1.705 1.00 1.00 ? 34 CYS A N 1 ATOM 29 C CA . CYS A 1 4 ? 7.008 -2.268 1.482 1.00 0.97 ? 34 CYS A CA 1 ATOM 30 C C . CYS A 1 4 ? 5.664 -2.960 1.722 1.00 1.24 ? 34 CYS A C 1 ATOM 31 O O . CYS A 1 4 ? 4.650 -2.298 1.934 1.00 2.59 ? 34 CYS A O 1 ATOM 32 C CB . CYS A 1 4 ? 8.114 -2.847 2.366 1.00 0.76 ? 34 CYS A CB 1 ATOM 33 S SG . CYS A 1 4 ? 8.309 -2.026 3.989 1.00 0.93 ? 34 CYS A SG 1 ATOM 34 H H . CYS A 1 4 ? 6.262 -0.605 2.491 1.00 1.52 ? 34 CYS A H 1 ATOM 35 H HA . CYS A 1 4 ? 7.324 -2.386 0.446 1.00 1.18 ? 34 CYS A HA 1 ATOM 36 N N . SER A 1 5 ? 5.701 -4.284 1.681 1.00 0.81 ? 35 SER A N 1 ATOM 37 C CA . SER A 1 5 ? 4.500 -5.073 1.892 1.00 0.91 ? 35 SER A CA 1 ATOM 38 C C . SER A 1 5 ? 4.402 -5.497 3.359 1.00 0.86 ? 35 SER A C 1 ATOM 39 O O . SER A 1 5 ? 3.388 -6.049 3.783 1.00 1.12 ? 35 SER A O 1 ATOM 40 C CB . SER A 1 5 ? 4.482 -6.303 0.982 1.00 1.23 ? 35 SER A CB 1 ATOM 41 O OG . SER A 1 5 ? 4.672 -5.957 -0.387 1.00 2.18 ? 35 SER A OG 1 ATOM 42 H H . SER A 1 5 ? 6.531 -4.815 1.508 1.00 1.68 ? 35 SER A H 1 ATOM 43 H HA . SER A 1 5 ? 3.672 -4.415 1.628 1.00 0.93 ? 35 SER A HA 1 ATOM 44 N N . CYS A 1 6 ? 5.470 -5.223 4.093 1.00 0.71 ? 36 CYS A N 1 ATOM 45 C CA . CYS A 1 6 ? 5.518 -5.569 5.503 1.00 0.81 ? 36 CYS A CA 1 ATOM 46 C C . CYS A 1 6 ? 5.427 -4.277 6.318 1.00 0.92 ? 36 CYS A C 1 ATOM 47 O O . CYS A 1 6 ? 5.019 -4.298 7.478 1.00 1.22 ? 36 CYS A O 1 ATOM 48 C CB . CYS A 1 6 ? 6.773 -6.373 5.847 1.00 0.75 ? 36 CYS A CB 1 ATOM 49 S SG . CYS A 1 6 ? 8.158 -6.175 4.667 1.00 1.93 ? 36 CYS A SG 1 ATOM 50 H H . CYS A 1 6 ? 6.291 -4.773 3.740 1.00 0.71 ? 36 CYS A H 1 ATOM 51 H HA . CYS A 1 6 ? 4.658 -6.210 5.698 1.00 1.01 ? 36 CYS A HA 1 ATOM 52 N N . CYS A 1 7 ? 5.815 -3.183 5.679 1.00 0.95 ? 37 CYS A N 1 ATOM 53 C CA . CYS A 1 7 ? 5.782 -1.884 6.330 1.00 1.23 ? 37 CYS A CA 1 ATOM 54 C C . CYS A 1 7 ? 5.193 -0.869 5.348 1.00 1.39 ? 37 CYS A C 1 ATOM 55 O O . CYS A 1 7 ? 5.778 0.187 5.116 1.00 2.07 ? 37 CYS A O 1 ATOM 56 C CB . CYS A 1 7 ? 7.169 -1.463 6.821 1.00 1.41 ? 37 CYS A CB 1 ATOM 57 S SG . CYS A 1 7 ? 8.141 -2.798 7.611 1.00 1.07 ? 37 CYS A SG 1 ATOM 58 H H . CYS A 1 7 ? 6.146 -3.174 4.735 1.00 1.01 ? 37 CYS A H 1 ATOM 59 H HA . CYS A 1 7 ? 5.145 -1.990 7.207 1.00 1.46 ? 37 CYS A HA 1 ATOM 60 N N . PRO A 1 8 ? 4.011 -1.236 4.783 1.00 1.91 ? 38 PRO A N 1 ATOM 61 C CA . PRO A 1 8 ? 3.335 -0.370 3.832 1.00 2.35 ? 38 PRO A CA 1 ATOM 62 C C . PRO A 1 8 ? 2.670 0.811 4.543 1.00 1.53 ? 38 PRO A C 1 ATOM 63 O O . PRO A 1 8 ? 1.444 0.909 4.577 1.00 2.85 ? 38 PRO A O 1 ATOM 64 C CB . PRO A 1 8 ? 2.341 -1.270 3.117 1.00 3.91 ? 38 PRO A CB 1 ATOM 65 C CG . PRO A 1 8 ? 2.168 -2.490 4.008 1.00 4.29 ? 38 PRO A CG 1 ATOM 66 C CD . PRO A 1 8 ? 3.289 -2.480 5.035 1.00 2.96 ? 38 PRO A CD 1 ATOM 67 H HA . PRO A 1 8 ? 4.058 0.060 3.138 1.00 2.74 ? 38 PRO A HA 1 ATOM 68 N N . VAL A 1 9 ? 3.507 1.678 5.092 1.00 1.24 ? 39 VAL A N 1 ATOM 69 C CA . VAL A 1 9 ? 3.016 2.849 5.799 1.00 1.53 ? 39 VAL A CA 1 ATOM 70 C C . VAL A 1 9 ? 4.203 3.656 6.328 1.00 1.56 ? 39 VAL A C 1 ATOM 71 O O . VAL A 1 9 ? 4.362 3.813 7.538 1.00 2.70 ? 39 VAL A O 1 ATOM 72 C CB . VAL A 1 9 ? 2.043 2.423 6.901 1.00 3.28 ? 39 VAL A CB 1 ATOM 73 C CG1 . VAL A 1 9 ? 0.592 2.588 6.446 1.00 3.67 ? 39 VAL A CG1 1 ATOM 74 C CG2 . VAL A 1 9 ? 2.317 0.986 7.350 1.00 5.03 ? 39 VAL A CG2 1 ATOM 75 H H . VAL A 1 9 ? 4.503 1.592 5.059 1.00 2.44 ? 39 VAL A H 1 ATOM 76 H HA . VAL A 1 9 ? 2.467 3.460 5.082 1.00 1.97 ? 39 VAL A HA 1 ATOM 77 H HB . VAL A 1 9 ? 2.202 3.078 7.759 1.00 4.23 ? 39 VAL A HB 1 ATOM 78 N N . GLY A 1 10 ? 5.006 4.147 5.396 1.00 1.61 ? 40 GLY A N 1 ATOM 79 C CA . GLY A 1 10 ? 6.174 4.934 5.753 1.00 2.45 ? 40 GLY A CA 1 ATOM 80 C C . GLY A 1 10 ? 6.702 4.537 7.133 1.00 2.07 ? 40 GLY A C 1 ATOM 81 O O . GLY A 1 10 ? 7.052 5.398 7.939 1.00 2.52 ? 40 GLY A O 1 ATOM 82 H H . GLY A 1 10 ? 4.870 4.015 4.414 1.00 2.08 ? 40 GLY A H 1 ATOM 83 N N . CYS A 1 11 ? 6.742 3.233 7.363 1.00 1.47 ? 41 CYS A N 1 ATOM 84 C CA . CYS A 1 11 ? 7.221 2.711 8.632 1.00 1.15 ? 41 CYS A CA 1 ATOM 85 C C . CYS A 1 11 ? 8.391 3.580 9.098 1.00 1.06 ? 41 CYS A C 1 ATOM 86 O O . CYS A 1 11 ? 9.076 4.194 8.281 1.00 1.39 ? 41 CYS A O 1 ATOM 87 C CB . CYS A 1 11 ? 7.613 1.236 8.525 1.00 1.20 ? 41 CYS A CB 1 ATOM 88 S SG . CYS A 1 11 ? 9.128 0.776 9.443 1.00 1.67 ? 41 CYS A SG 1 ATOM 89 H H . CYS A 1 11 ? 6.456 2.539 6.702 1.00 1.47 ? 41 CYS A H 1 ATOM 90 H HA . CYS A 1 11 ? 6.388 2.776 9.332 1.00 1.21 ? 41 CYS A HA 1 ATOM 91 N N . ALA A 1 12 ? 8.584 3.604 10.408 1.00 1.24 ? 42 ALA A N 1 ATOM 92 C CA . ALA A 1 12 ? 9.659 4.387 10.992 1.00 1.33 ? 42 ALA A CA 1 ATOM 93 C C . ALA A 1 12 ? 10.983 4.006 10.326 1.00 0.94 ? 42 ALA A C 1 ATOM 94 O O . ALA A 1 12 ? 11.589 4.820 9.631 1.00 0.90 ? 42 ALA A O 1 ATOM 95 C CB . ALA A 1 12 ? 9.685 4.170 12.507 1.00 2.16 ? 42 ALA A CB 1 ATOM 96 H H . ALA A 1 12 ? 8.022 3.101 11.065 1.00 1.65 ? 42 ALA A H 1 ATOM 97 H HA . ALA A 1 12 ? 9.450 5.438 10.792 1.00 1.56 ? 42 ALA A HA 1 ATOM 98 N N . LYS A 1 13 ? 11.392 2.768 10.562 1.00 1.38 ? 43 LYS A N 1 ATOM 99 C CA . LYS A 1 13 ? 12.632 2.269 9.993 1.00 1.74 ? 43 LYS A CA 1 ATOM 100 C C . LYS A 1 13 ? 12.610 2.470 8.476 1.00 1.47 ? 43 LYS A C 1 ATOM 101 O O . LYS A 1 13 ? 13.656 2.457 7.829 1.00 2.08 ? 43 LYS A O 1 ATOM 102 C CB . LYS A 1 13 ? 12.872 0.819 10.418 1.00 2.43 ? 43 LYS A CB 1 ATOM 103 C CG . LYS A 1 13 ? 14.299 0.628 10.936 1.00 3.82 ? 43 LYS A CG 1 ATOM 104 C CD . LYS A 1 13 ? 14.363 -0.507 11.960 1.00 4.25 ? 43 LYS A CD 1 ATOM 105 C CE . LYS A 1 13 ? 15.803 -0.984 12.160 1.00 5.90 ? 43 LYS A CE 1 ATOM 106 N NZ . LYS A 1 13 ? 15.923 -1.755 13.417 1.00 6.84 ? 43 LYS A NZ 1 ATOM 107 H H . LYS A 1 13 ? 10.893 2.113 11.128 1.00 1.77 ? 43 LYS A H 1 ATOM 108 H HA . LYS A 1 13 ? 13.445 2.865 10.408 1.00 2.02 ? 43 LYS A HA 1 ATOM 109 N N . CYS A 1 14 ? 11.406 2.650 7.953 1.00 0.91 ? 44 CYS A N 1 ATOM 110 C CA . CYS A 1 14 ? 11.233 2.853 6.525 1.00 1.28 ? 44 CYS A CA 1 ATOM 111 C C . CYS A 1 14 ? 10.735 4.282 6.299 1.00 1.89 ? 44 CYS A C 1 ATOM 112 O O . CYS A 1 14 ? 10.079 4.563 5.297 1.00 2.96 ? 44 CYS A O 1 ATOM 113 C CB . CYS A 1 14 ? 10.288 1.816 5.916 1.00 1.07 ? 44 CYS A CB 1 ATOM 114 S SG . CYS A 1 14 ? 11.003 0.142 5.729 1.00 1.39 ? 44 CYS A SG 1 ATOM 115 H H . CYS A 1 14 ? 10.560 2.659 8.486 1.00 0.70 ? 44 CYS A H 1 ATOM 116 H HA . CYS A 1 14 ? 12.212 2.708 6.067 1.00 1.80 ? 44 CYS A HA 1 ATOM 117 N N . SER A 1 15 ? 11.064 5.146 7.247 1.00 1.48 ? 45 SER A N 1 ATOM 118 C CA . SER A 1 15 ? 10.658 6.539 7.165 1.00 2.19 ? 45 SER A CA 1 ATOM 119 C C . SER A 1 15 ? 10.743 7.024 5.716 1.00 1.97 ? 45 SER A C 1 ATOM 120 O O . SER A 1 15 ? 9.727 7.122 5.030 1.00 2.42 ? 45 SER A O 1 ATOM 121 C CB . SER A 1 15 ? 11.521 7.419 8.070 1.00 3.00 ? 45 SER A CB 1 ATOM 122 O OG . SER A 1 15 ? 11.131 7.323 9.438 1.00 3.94 ? 45 SER A OG 1 ATOM 123 H H . SER A 1 15 ? 11.598 4.909 8.059 1.00 1.07 ? 45 SER A H 1 ATOM 124 H HA . SER A 1 15 ? 9.626 6.560 7.515 1.00 2.86 ? 45 SER A HA 1 ATOM 125 N N . GLN A 1 16 ? 11.965 7.313 5.293 1.00 2.00 ? 46 GLN A N 1 ATOM 126 C CA . GLN A 1 16 ? 12.196 7.785 3.938 1.00 2.32 ? 46 GLN A CA 1 ATOM 127 C C . GLN A 1 16 ? 13.271 6.937 3.257 1.00 1.52 ? 46 GLN A C 1 ATOM 128 O O . GLN A 1 16 ? 14.236 7.472 2.713 1.00 2.58 ? 46 GLN A O 1 ATOM 129 C CB . GLN A 1 16 ? 12.579 9.266 3.932 1.00 3.82 ? 46 GLN A CB 1 ATOM 130 C CG . GLN A 1 16 ? 12.785 9.773 2.503 1.00 4.40 ? 46 GLN A CG 1 ATOM 131 C CD . GLN A 1 16 ? 11.552 9.496 1.640 1.00 6.16 ? 46 GLN A CD 1 ATOM 132 O OE1 . GLN A 1 16 ? 10.489 10.062 1.832 1.00 7.64 ? 46 GLN A OE1 1 ATOM 133 N NE2 . GLN A 1 16 ? 11.754 8.597 0.681 1.00 6.56 ? 46 GLN A NE2 1 ATOM 134 H H . GLN A 1 16 ? 12.786 7.230 5.857 1.00 2.30 ? 46 GLN A H 1 ATOM 135 H HA . GLN A 1 16 ? 11.244 7.661 3.422 1.00 2.86 ? 46 GLN A HA 1 ATOM 136 N N . GLY A 1 17 ? 13.069 5.629 3.309 1.00 0.97 ? 47 GLY A N 1 ATOM 137 C CA . GLY A 1 17 ? 14.009 4.701 2.703 1.00 1.37 ? 47 GLY A CA 1 ATOM 138 C C . GLY A 1 17 ? 13.689 3.259 3.100 1.00 1.42 ? 47 GLY A C 1 ATOM 139 O O . GLY A 1 17 ? 13.959 2.847 4.227 1.00 2.89 ? 47 GLY A O 1 ATOM 140 H H . GLY A 1 17 ? 12.281 5.202 3.753 1.00 1.82 ? 47 GLY A H 1 ATOM 141 N N . CYS A 1 18 ? 13.119 2.530 2.151 1.00 1.29 ? 48 CYS A N 1 ATOM 142 C CA . CYS A 1 18 ? 12.759 1.143 2.388 1.00 1.21 ? 48 CYS A CA 1 ATOM 143 C C . CYS A 1 18 ? 14.020 0.385 2.811 1.00 1.07 ? 48 CYS A C 1 ATOM 144 O O . CYS A 1 18 ? 14.654 -0.277 1.992 1.00 1.75 ? 48 CYS A O 1 ATOM 145 C CB . CYS A 1 18 ? 12.100 0.512 1.160 1.00 1.44 ? 48 CYS A CB 1 ATOM 146 S SG . CYS A 1 18 ? 11.411 -1.161 1.433 1.00 1.24 ? 48 CYS A SG 1 ATOM 147 H H . CYS A 1 18 ? 12.903 2.873 1.237 1.00 2.47 ? 48 CYS A H 1 ATOM 148 H HA . CYS A 1 18 ? 12.020 1.143 3.189 1.00 1.16 ? 48 CYS A HA 1 ATOM 149 N N . ILE A 1 19 ? 14.344 0.509 4.090 1.00 1.07 ? 49 ILE A N 1 ATOM 150 C CA . ILE A 1 19 ? 15.517 -0.155 4.632 1.00 1.05 ? 49 ILE A CA 1 ATOM 151 C C . ILE A 1 19 ? 15.122 -1.543 5.142 1.00 1.02 ? 49 ILE A C 1 ATOM 152 O O . ILE A 1 19 ? 15.873 -2.172 5.885 1.00 1.16 ? 49 ILE A O 1 ATOM 153 C CB . ILE A 1 19 ? 16.188 0.721 5.692 1.00 1.14 ? 49 ILE A CB 1 ATOM 154 C CG1 . ILE A 1 19 ? 15.353 0.769 6.972 1.00 1.15 ? 49 ILE A CG1 1 ATOM 155 C CG2 . ILE A 1 19 ? 16.477 2.120 5.143 1.00 1.23 ? 49 ILE A CG2 1 ATOM 156 C CD1 . ILE A 1 19 ? 15.787 -0.323 7.952 1.00 1.08 ? 49 ILE A CD1 1 ATOM 157 H H . ILE A 1 19 ? 13.823 1.050 4.749 1.00 1.69 ? 49 ILE A H 1 ATOM 158 H HA . ILE A 1 19 ? 16.230 -0.277 3.816 1.00 1.15 ? 49 ILE A HA 1 ATOM 159 H HB . ILE A 1 19 ? 17.147 0.272 5.949 1.00 1.26 ? 49 ILE A HB 1 ATOM 160 N N . CYS A 1 20 ? 13.944 -1.979 4.722 1.00 0.99 ? 50 CYS A N 1 ATOM 161 C CA . CYS A 1 20 ? 13.440 -3.280 5.127 1.00 1.03 ? 50 CYS A CA 1 ATOM 162 C C . CYS A 1 20 ? 13.310 -4.155 3.878 1.00 1.04 ? 50 CYS A C 1 ATOM 163 O O . CYS A 1 20 ? 12.383 -3.983 3.089 1.00 1.47 ? 50 CYS A O 1 ATOM 164 C CB . CYS A 1 20 ? 12.115 -3.164 5.882 1.00 1.43 ? 50 CYS A CB 1 ATOM 165 S SG . CYS A 1 20 ? 11.276 -4.757 6.210 1.00 1.73 ? 50 CYS A SG 1 ATOM 166 H H . CYS A 1 20 ? 13.339 -1.461 4.117 1.00 1.06 ? 50 CYS A H 1 ATOM 167 H HA . CYS A 1 20 ? 14.172 -3.698 5.818 1.00 1.05 ? 50 CYS A HA 1 ATOM 168 N N . LYS A 1 21 ? 14.254 -5.075 3.738 1.00 1.12 ? 51 LYS A N 1 ATOM 169 C CA . LYS A 1 21 ? 14.257 -5.976 2.599 1.00 1.39 ? 51 LYS A CA 1 ATOM 170 C C . LYS A 1 21 ? 14.383 -7.418 3.095 1.00 1.38 ? 51 LYS A C 1 ATOM 171 O O . LYS A 1 21 ? 15.377 -8.089 2.820 1.00 2.31 ? 51 LYS A O 1 ATOM 172 C CB . LYS A 1 21 ? 15.343 -5.573 1.599 1.00 2.24 ? 51 LYS A CB 1 ATOM 173 C CG . LYS A 1 21 ? 15.219 -4.096 1.221 1.00 3.92 ? 51 LYS A CG 1 ATOM 174 C CD . LYS A 1 21 ? 13.804 -3.770 0.739 1.00 6.02 ? 51 LYS A CD 1 ATOM 175 C CE . LYS A 1 21 ? 13.695 -3.911 -0.780 1.00 7.21 ? 51 LYS A CE 1 ATOM 176 N NZ . LYS A 1 21 ? 12.384 -4.485 -1.155 1.00 8.43 ? 51 LYS A NZ 1 ATOM 177 H H . LYS A 1 21 ? 15.005 -5.208 4.384 1.00 1.35 ? 51 LYS A H 1 ATOM 178 H HA . LYS A 1 21 ? 13.297 -5.868 2.093 1.00 1.58 ? 51 LYS A HA 1 ATOM 179 N N . GLU A 1 22 ? 13.361 -7.852 3.818 1.00 1.34 ? 52 GLU A N 1 ATOM 180 C CA . GLU A 1 22 ? 13.345 -9.202 4.356 1.00 1.55 ? 52 GLU A CA 1 ATOM 181 C C . GLU A 1 22 ? 12.068 -9.436 5.166 1.00 1.40 ? 52 GLU A C 1 ATOM 182 O O . GLU A 1 22 ? 11.961 -8.988 6.306 1.00 2.50 ? 52 GLU A O 1 ATOM 183 C CB . GLU A 1 22 ? 14.589 -9.469 5.205 1.00 2.63 ? 52 GLU A CB 1 ATOM 184 C CG . GLU A 1 22 ? 14.544 -10.870 5.819 1.00 2.81 ? 52 GLU A CG 1 ATOM 185 C CD . GLU A 1 22 ? 15.916 -11.543 5.751 1.00 3.82 ? 52 GLU A CD 1 ATOM 186 O OE1 . GLU A 1 22 ? 16.393 -11.868 4.654 1.00 4.49 ? 52 GLU A OE1 1 ATOM 187 O OE2 . GLU A 1 22 ? 16.491 -11.725 6.891 1.00 4.68 ? 52 GLU A OE2 1 ATOM 188 H H . GLU A 1 22 ? 12.556 -7.301 4.037 1.00 1.95 ? 52 GLU A H 1 ATOM 189 H HA . GLU A 1 22 ? 13.358 -9.860 3.487 1.00 1.83 ? 52 GLU A HA 1 ATOM 190 N N . ALA A 1 23 ? 11.131 -10.137 4.544 1.00 1.11 ? 53 ALA A N 1 ATOM 191 C CA . ALA A 1 23 ? 9.866 -10.436 5.192 1.00 1.58 ? 53 ALA A CA 1 ATOM 192 C C . ALA A 1 23 ? 8.893 -11.012 4.161 1.00 1.55 ? 53 ALA A C 1 ATOM 193 O O . ALA A 1 23 ? 8.141 -10.272 3.529 1.00 2.40 ? 53 ALA A O 1 ATOM 194 C CB . ALA A 1 23 ? 9.324 -9.171 5.861 1.00 2.39 ? 53 ALA A CB 1 ATOM 195 H H . ALA A 1 23 ? 11.226 -10.498 3.616 1.00 1.67 ? 53 ALA A H 1 ATOM 196 H HA . ALA A 1 23 ? 10.055 -11.186 5.960 1.00 2.02 ? 53 ALA A HA 1 ATOM 197 N N . SER A 1 24 ? 8.939 -12.329 4.024 1.00 1.28 ? 54 SER A N 1 ATOM 198 C CA . SER A 1 24 ? 8.071 -13.014 3.081 1.00 1.93 ? 54 SER A CA 1 ATOM 199 C C . SER A 1 24 ? 6.742 -13.365 3.753 1.00 2.08 ? 54 SER A C 1 ATOM 200 O O . SER A 1 24 ? 6.162 -14.415 3.479 1.00 3.32 ? 54 SER A O 1 ATOM 201 C CB . SER A 1 24 ? 8.739 -14.277 2.534 1.00 2.55 ? 54 SER A CB 1 ATOM 202 O OG . SER A 1 24 ? 8.646 -14.358 1.114 1.00 3.09 ? 54 SER A OG 1 ATOM 203 H H . SER A 1 24 ? 9.553 -12.925 4.542 1.00 1.38 ? 54 SER A H 1 ATOM 204 H HA . SER A 1 24 ? 7.913 -12.306 2.267 1.00 2.15 ? 54 SER A HA 1 ATOM 205 N N . ASP A 1 25 ? 6.298 -12.467 4.619 1.00 1.45 ? 55 ASP A N 1 ATOM 206 C CA . ASP A 1 25 ? 5.048 -12.669 5.332 1.00 1.61 ? 55 ASP A CA 1 ATOM 207 C C . ASP A 1 25 ? 5.136 -12.003 6.707 1.00 1.45 ? 55 ASP A C 1 ATOM 208 O O . ASP A 1 25 ? 4.123 -11.825 7.381 1.00 1.75 ? 55 ASP A O 1 ATOM 209 C CB . ASP A 1 25 ? 4.769 -14.158 5.545 1.00 1.95 ? 55 ASP A CB 1 ATOM 210 C CG . ASP A 1 25 ? 3.587 -14.715 4.749 1.00 2.93 ? 55 ASP A CG 1 ATOM 211 O OD1 . ASP A 1 25 ? 3.727 -15.091 3.576 1.00 4.01 ? 55 ASP A OD1 1 ATOM 212 O OD2 . ASP A 1 25 ? 2.469 -14.755 5.391 1.00 3.53 ? 55 ASP A OD2 1 ATOM 213 H H . ASP A 1 25 ? 6.775 -11.616 4.836 1.00 1.81 ? 55 ASP A H 1 ATOM 214 H HA . ASP A 1 25 ? 4.282 -12.219 4.700 1.00 1.76 ? 55 ASP A HA 1 ATOM 215 N N . LYS A 1 26 ? 6.358 -11.654 7.082 1.00 1.07 ? 56 LYS A N 1 ATOM 216 C CA . LYS A 1 26 ? 6.593 -11.012 8.365 1.00 1.06 ? 56 LYS A CA 1 ATOM 217 C C . LYS A 1 26 ? 8.038 -10.515 8.425 1.00 0.93 ? 56 LYS A C 1 ATOM 218 O O . LYS A 1 26 ? 8.932 -11.123 7.837 1.00 0.97 ? 56 LYS A O 1 ATOM 219 C CB . LYS A 1 26 ? 6.218 -11.953 9.511 1.00 1.40 ? 56 LYS A CB 1 ATOM 220 C CG . LYS A 1 26 ? 6.716 -11.410 10.852 1.00 1.62 ? 56 LYS A CG 1 ATOM 221 C CD . LYS A 1 26 ? 6.364 -12.364 11.995 1.00 2.08 ? 56 LYS A CD 1 ATOM 222 C CE . LYS A 1 26 ? 7.563 -12.573 12.922 1.00 3.24 ? 56 LYS A CE 1 ATOM 223 N NZ . LYS A 1 26 ? 7.161 -12.399 14.336 1.00 4.47 ? 56 LYS A NZ 1 ATOM 224 H H . LYS A 1 26 ? 7.177 -11.803 6.528 1.00 0.88 ? 56 LYS A H 1 ATOM 225 H HA . LYS A 1 26 ? 5.928 -10.150 8.425 1.00 1.05 ? 56 LYS A HA 1 ATOM 226 N N . CYS A 1 27 ? 8.223 -9.415 9.140 1.00 1.10 ? 57 CYS A N 1 ATOM 227 C CA . CYS A 1 27 ? 9.545 -8.830 9.284 1.00 1.21 ? 57 CYS A CA 1 ATOM 228 C C . CYS A 1 27 ? 9.877 -8.756 10.776 1.00 1.61 ? 57 CYS A C 1 ATOM 229 O O . CYS A 1 27 ? 8.986 -8.840 11.619 1.00 3.08 ? 57 CYS A O 1 ATOM 230 C CB . CYS A 1 27 ? 9.633 -7.459 8.611 1.00 1.07 ? 57 CYS A CB 1 ATOM 231 S SG . CYS A 1 27 ? 9.685 -6.039 9.765 1.00 2.75 ? 57 CYS A SG 1 ATOM 232 H H . CYS A 1 27 ? 7.491 -8.927 9.615 1.00 1.33 ? 57 CYS A H 1 ATOM 233 H HA . CYS A 1 27 ? 10.239 -9.491 8.766 1.00 1.30 ? 57 CYS A HA 1 ATOM 234 N N . SER A 1 28 ? 11.163 -8.599 11.056 1.00 0.85 ? 58 SER A N 1 ATOM 235 C CA . SER A 1 28 ? 11.624 -8.513 12.432 1.00 1.02 ? 58 SER A CA 1 ATOM 236 C C . SER A 1 28 ? 12.700 -7.433 12.556 1.00 0.88 ? 58 SER A C 1 ATOM 237 O O . SER A 1 28 ? 13.455 -7.413 13.526 1.00 1.05 ? 58 SER A O 1 ATOM 238 C CB . SER A 1 28 ? 12.165 -9.859 12.917 1.00 1.51 ? 58 SER A CB 1 ATOM 239 O OG . SER A 1 28 ? 13.006 -10.477 11.947 1.00 1.91 ? 58 SER A OG 1 ATOM 240 H H . SER A 1 28 ? 11.882 -8.532 10.365 1.00 1.53 ? 58 SER A H 1 ATOM 241 H HA . SER A 1 28 ? 10.743 -8.244 13.015 1.00 1.09 ? 58 SER A HA 1 ATOM 242 N N . CYS A 1 29 ? 12.736 -6.561 11.559 1.00 0.83 ? 59 CYS A N 1 ATOM 243 C CA . CYS A 1 29 ? 13.708 -5.480 11.545 1.00 0.84 ? 59 CYS A CA 1 ATOM 244 C C . CYS A 1 29 ? 12.974 -4.171 11.841 1.00 0.79 ? 59 CYS A C 1 ATOM 245 O O . CYS A 1 29 ? 13.605 -3.144 12.087 1.00 0.94 ? 59 CYS A O 1 ATOM 246 C CB . CYS A 1 29 ? 14.468 -5.421 10.218 1.00 0.94 ? 59 CYS A CB 1 ATOM 247 S SG . CYS A 1 29 ? 13.651 -6.283 8.826 1.00 2.62 ? 59 CYS A SG 1 ATOM 248 H H . CYS A 1 29 ? 12.118 -6.584 10.773 1.00 0.98 ? 59 CYS A H 1 ATOM 249 H HA . CYS A 1 29 ? 14.434 -5.702 12.326 1.00 0.97 ? 59 CYS A HA 1 ATOM 250 N N . CYS A 1 30 ? 11.652 -4.250 11.807 1.00 0.77 ? 60 CYS A N 1 ATOM 251 C CA . CYS A 1 30 ? 10.826 -3.083 12.068 1.00 0.90 ? 60 CYS A CA 1 ATOM 252 C C . CYS A 1 30 ? 9.705 -3.493 13.026 1.00 1.35 ? 60 CYS A C 1 ATOM 253 O O . CYS A 1 30 ? 9.875 -3.445 14.243 1.00 2.30 ? 60 CYS A O 1 ATOM 254 C CB . CYS A 1 30 ? 10.278 -2.476 10.775 1.00 0.85 ? 60 CYS A CB 1 ATOM 255 S SG . CYS A 1 30 ? 11.506 -2.297 9.431 1.00 1.19 ? 60 CYS A SG 1 ATOM 256 H H . CYS A 1 30 ? 11.147 -5.089 11.605 1.00 0.80 ? 60 CYS A H 1 ATOM 257 H HA . CYS A 1 30 ? 11.474 -2.337 12.528 1.00 1.11 ? 60 CYS A HA 1 ATOM 258 N N . ALA A 1 31 ? 8.584 -3.888 12.439 1.00 2.05 ? 61 ALA A N 1 ATOM 259 C CA . ALA A 1 31 ? 7.436 -4.306 13.225 1.00 2.73 ? 61 ALA A CA 1 ATOM 260 C C . ALA A 1 31 ? 7.257 -5.820 13.094 1.00 3.49 ? 61 ALA A C 1 ATOM 261 O O . ALA A 1 31 ? 6.814 -6.247 12.005 1.00 4.68 ? 61 ALA A O 1 ATOM 262 C CB . ALA A 1 31 ? 6.197 -3.531 12.772 1.00 4.21 ? 61 ALA A CB 1 ATOM 263 O OXT . ALA A 1 31 ? 7.568 -6.517 14.084 1.00 3.86 ? 61 ALA A OXT 1 ATOM 264 H H . ALA A 1 31 ? 8.454 -3.924 11.449 1.00 2.81 ? 61 ALA A H 1 ATOM 265 H HA . ALA A 1 31 ? 7.640 -4.062 14.268 1.00 2.77 ? 61 ALA A HA 1 HETATM 268 CD CD . CD D 2 . ? 10.187 -0.883 7.855 1.00 1.38 ? 106 CD A CD 1
Spin
Binding residue
Residue numbering in mmCIF file:
A:
C7 C11 C14 C20 C30
Residue numbering in PDB file:
A:
C37 C41 C44 C50 C60
Receptor
Assembly ID: 1mrt_1
Stoichiometry type
: Monomer -A1
Assembly defined by
: Author
PDB ID
:
1mrt
Experimental method
: SOLUTION NMR
Resolution
: N/A
UniProt ID
:
P04355
PubMed ID
:
3184190
Ligand
Ligand ID
:
CD
Ligand name
: Cadmium(2+)
Biological relevance
: Irrelevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
Synonyms
Formula
2D structure
CD
Cadmium(2+)
1. Cd(2+); 2. Cadmium ion; 3. Cadmium(2+) ion; 4. Cadmium(ii) cation; 5. Cadmium, ion (cd2+); 6. Cd2+;
Cd
Binding affinity
Experimental affinity
N/A
Predicted affinity
N/A,
show detail
Software
Raw score
Predicted affinity
90% confidence interval
X-Score
N/A (log(Ka))
N/A
[N/A,N/A]
ITScore
0.0 (kcal/mol)
1.22 mM
[1.32 uM,1]
Vina
N/A (kcal/mol)
N/A
[N/A,N/A]
Surface area (A
2
)
Surface area of receptor
2406.14
Surface area of ligand
N/A
Surface area of complex
2406.14
Interface area
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)