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Yang Lab
Function Annotation for BL20040
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Ligand Information
Binding Information
data_1mrb_1 # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . LYS A 1 1 ? 0.000 0.000 0.000 1.00 3.37 ? 31 LYS A N 1 ATOM 2 C CA . LYS A 1 1 ? 1.453 0.000 0.000 1.00 2.46 ? 31 LYS A CA 1 ATOM 3 C C . LYS A 1 1 ? 1.959 1.228 0.760 1.00 1.98 ? 31 LYS A C 1 ATOM 4 O O . LYS A 1 1 ? 1.463 2.335 0.557 1.00 2.52 ? 31 LYS A O 1 ATOM 5 C CB . LYS A 1 1 ? 1.989 -0.102 -1.429 1.00 2.72 ? 31 LYS A CB 1 ATOM 6 C CG . LYS A 1 1 ? 3.337 -0.825 -1.459 1.00 3.19 ? 31 LYS A CG 1 ATOM 7 C CD . LYS A 1 1 ? 4.062 -0.580 -2.784 1.00 4.20 ? 31 LYS A CD 1 ATOM 8 C CE . LYS A 1 1 ? 3.105 -0.733 -3.969 1.00 4.95 ? 31 LYS A CE 1 ATOM 9 N NZ . LYS A 1 1 ? 2.795 0.589 -4.559 1.00 6.14 ? 31 LYS A NZ 1 ATOM 10 H H . LYS A 1 1 ? -0.338 0.478 0.828 1.00 3.48 ? 31 LYS A H 1 ATOM 11 H HA . LYS A 1 1 ? 1.780 -0.894 0.531 1.00 2.54 ? 31 LYS A HA 1 ATOM 12 N N . SER A 1 2 ? 2.939 0.990 1.619 1.00 1.47 ? 32 SER A N 1 ATOM 13 C CA . SER A 1 2 ? 3.517 2.063 2.411 1.00 1.16 ? 32 SER A CA 1 ATOM 14 C C . SER A 1 2 ? 4.337 2.992 1.513 1.00 1.16 ? 32 SER A C 1 ATOM 15 O O . SER A 1 2 ? 3.790 3.905 0.895 1.00 2.27 ? 32 SER A O 1 ATOM 16 C CB . SER A 1 2 ? 4.390 1.507 3.537 1.00 1.28 ? 32 SER A CB 1 ATOM 17 O OG . SER A 1 2 ? 4.638 2.479 4.549 1.00 1.72 ? 32 SER A OG 1 ATOM 18 H H . SER A 1 2 ? 3.336 0.086 1.778 1.00 1.79 ? 32 SER A H 1 ATOM 19 H HA . SER A 1 2 ? 2.668 2.595 2.839 1.00 1.33 ? 32 SER A HA 1 ATOM 20 N N . CYS A 1 3 ? 5.634 2.728 1.469 1.00 0.84 ? 33 CYS A N 1 ATOM 21 C CA . CYS A 1 3 ? 6.534 3.529 0.658 1.00 0.99 ? 33 CYS A CA 1 ATOM 22 C C . CYS A 1 3 ? 7.928 3.472 1.287 1.00 0.78 ? 33 CYS A C 1 ATOM 23 O O . CYS A 1 3 ? 8.924 3.760 0.625 1.00 0.98 ? 33 CYS A O 1 ATOM 24 C CB . CYS A 1 3 ? 6.034 4.967 0.509 1.00 1.44 ? 33 CYS A CB 1 ATOM 25 S SG . CYS A 1 3 ? 5.518 5.766 2.073 1.00 1.51 ? 33 CYS A SG 1 ATOM 26 H H . CYS A 1 3 ? 6.070 1.983 1.975 1.00 1.58 ? 33 CYS A H 1 ATOM 27 H HA . CYS A 1 3 ? 6.540 3.083 -0.337 1.00 1.28 ? 33 CYS A HA 1 ATOM 28 N N . CYS A 1 4 ? 7.954 3.098 2.558 1.00 0.84 ? 34 CYS A N 1 ATOM 29 C CA . CYS A 1 4 ? 9.208 2.999 3.284 1.00 0.90 ? 34 CYS A CA 1 ATOM 30 C C . CYS A 1 4 ? 8.992 2.091 4.496 1.00 0.99 ? 34 CYS A C 1 ATOM 31 O O . CYS A 1 4 ? 7.898 1.566 4.695 1.00 1.05 ? 34 CYS A O 1 ATOM 32 C CB . CYS A 1 4 ? 9.737 4.377 3.689 1.00 1.04 ? 34 CYS A CB 1 ATOM 33 S SG . CYS A 1 4 ? 8.588 5.369 4.710 1.00 1.35 ? 34 CYS A SG 1 ATOM 34 H H . CYS A 1 4 ? 7.139 2.865 3.089 1.00 1.12 ? 34 CYS A H 1 ATOM 35 H HA . CYS A 1 4 ? 9.934 2.562 2.597 1.00 0.98 ? 34 CYS A HA 1 ATOM 36 N N . SER A 1 5 ? 10.053 1.935 5.274 1.00 1.32 ? 35 SER A N 1 ATOM 37 C CA . SER A 1 5 ? 9.993 1.099 6.462 1.00 1.50 ? 35 SER A CA 1 ATOM 38 C C . SER A 1 5 ? 10.348 1.924 7.701 1.00 1.55 ? 35 SER A C 1 ATOM 39 O O . SER A 1 5 ? 10.509 1.376 8.790 1.00 1.97 ? 35 SER A O 1 ATOM 40 C CB . SER A 1 5 ? 10.931 -0.103 6.338 1.00 1.70 ? 35 SER A CB 1 ATOM 41 O OG . SER A 1 5 ? 10.245 -1.337 6.528 1.00 3.09 ? 35 SER A OG 1 ATOM 42 H H . SER A 1 5 ? 10.939 2.366 5.106 1.00 1.59 ? 35 SER A H 1 ATOM 43 H HA . SER A 1 5 ? 8.962 0.750 6.517 1.00 1.49 ? 35 SER A HA 1 ATOM 44 N N . CYS A 1 6 ? 10.460 3.228 7.492 1.00 1.21 ? 36 CYS A N 1 ATOM 45 C CA . CYS A 1 6 ? 10.793 4.133 8.578 1.00 1.25 ? 36 CYS A CA 1 ATOM 46 C C . CYS A 1 6 ? 9.546 4.950 8.923 1.00 1.21 ? 36 CYS A C 1 ATOM 47 O O . CYS A 1 6 ? 9.519 5.652 9.932 1.00 1.51 ? 36 CYS A O 1 ATOM 48 C CB . CYS A 1 6 ? 11.981 5.029 8.223 1.00 1.22 ? 36 CYS A CB 1 ATOM 49 S SG . CYS A 1 6 ? 12.207 5.332 6.433 1.00 1.63 ? 36 CYS A SG 1 ATOM 50 H H . CYS A 1 6 ? 10.328 3.665 6.602 1.00 1.05 ? 36 CYS A H 1 ATOM 51 H HA . CYS A 1 6 ? 11.095 3.513 9.422 1.00 1.36 ? 36 CYS A HA 1 ATOM 52 N N . CYS A 1 7 ? 8.544 4.830 8.064 1.00 1.17 ? 37 CYS A N 1 ATOM 53 C CA . CYS A 1 7 ? 7.296 5.548 8.266 1.00 1.15 ? 37 CYS A CA 1 ATOM 54 C C . CYS A 1 7 ? 6.141 4.616 7.896 1.00 1.14 ? 37 CYS A C 1 ATOM 55 O O . CYS A 1 7 ? 6.114 4.058 6.800 1.00 1.18 ? 37 CYS A O 1 ATOM 56 C CB . CYS A 1 7 ? 7.258 6.850 7.464 1.00 1.18 ? 37 CYS A CB 1 ATOM 57 S SG . CYS A 1 7 ? 8.740 7.908 7.646 1.00 1.28 ? 37 CYS A SG 1 ATOM 58 H H . CYS A 1 7 ? 8.574 4.257 7.246 1.00 1.38 ? 37 CYS A H 1 ATOM 59 H HA . CYS A 1 7 ? 7.256 5.815 9.321 1.00 1.21 ? 37 CYS A HA 1 ATOM 60 N N . PRO A 1 8 ? 5.189 4.472 8.857 1.00 1.20 ? 38 PRO A N 1 ATOM 61 C CA . PRO A 1 8 ? 4.033 3.617 8.643 1.00 1.25 ? 38 PRO A CA 1 ATOM 62 C C . PRO A 1 8 ? 3.029 4.279 7.698 1.00 1.32 ? 38 PRO A C 1 ATOM 63 O O . PRO A 1 8 ? 3.242 5.404 7.249 1.00 1.35 ? 38 PRO A O 1 ATOM 64 C CB . PRO A 1 8 ? 3.467 3.368 10.031 1.00 1.41 ? 38 PRO A CB 1 ATOM 65 C CG . PRO A 1 8 ? 4.041 4.460 10.919 1.00 1.50 ? 38 PRO A CG 1 ATOM 66 C CD . PRO A 1 8 ? 5.187 5.117 10.167 1.00 1.35 ? 38 PRO A CD 1 ATOM 67 H HA . PRO A 1 8 ? 4.338 2.688 8.162 1.00 1.25 ? 38 PRO A HA 1 ATOM 68 N N . PRO A 1 9 ? 1.927 3.533 7.417 1.00 1.41 ? 39 PRO A N 1 ATOM 69 C CA . PRO A 1 9 ? 0.889 4.036 6.533 1.00 1.57 ? 39 PRO A CA 1 ATOM 70 C C . PRO A 1 9 ? 0.036 5.094 7.235 1.00 1.69 ? 39 PRO A C 1 ATOM 71 O O . PRO A 1 9 ? -1.188 4.976 7.288 1.00 1.73 ? 39 PRO A O 1 ATOM 72 C CB . PRO A 1 9 ? 0.093 2.808 6.123 1.00 1.67 ? 39 PRO A CB 1 ATOM 73 C CG . PRO A 1 9 ? 0.421 1.736 7.150 1.00 1.58 ? 39 PRO A CG 1 ATOM 74 C CD . PRO A 1 9 ? 1.641 2.197 7.930 1.00 1.44 ? 39 PRO A CD 1 ATOM 75 H HA . PRO A 1 9 ? 1.337 4.529 5.670 1.00 1.61 ? 39 PRO A HA 1 ATOM 76 N N . GLY A 1 10 ? 0.715 6.105 7.757 1.00 1.83 ? 40 GLY A N 1 ATOM 77 C CA . GLY A 1 10 ? 0.035 7.183 8.454 1.00 2.03 ? 40 GLY A CA 1 ATOM 78 C C . GLY A 1 10 ? 1.007 8.314 8.797 1.00 1.66 ? 40 GLY A C 1 ATOM 79 O O . GLY A 1 10 ? 0.773 9.076 9.734 1.00 1.73 ? 40 GLY A O 1 ATOM 80 H H . GLY A 1 10 ? 1.710 6.194 7.710 1.00 1.87 ? 40 GLY A H 1 ATOM 81 N N . CYS A 1 11 ? 2.078 8.387 8.020 1.00 1.43 ? 41 CYS A N 1 ATOM 82 C CA . CYS A 1 11 ? 3.087 9.411 8.230 1.00 1.18 ? 41 CYS A CA 1 ATOM 83 C C . CYS A 1 11 ? 2.610 10.700 7.557 1.00 1.08 ? 41 CYS A C 1 ATOM 84 O O . CYS A 1 11 ? 1.829 10.657 6.608 1.00 1.37 ? 41 CYS A O 1 ATOM 85 C CB . CYS A 1 11 ? 4.457 8.970 7.711 1.00 1.22 ? 41 CYS A CB 1 ATOM 86 S SG . CYS A 1 11 ? 4.860 9.546 6.021 1.00 1.89 ? 41 CYS A SG 1 ATOM 87 H H . CYS A 1 11 ? 2.261 7.763 7.260 1.00 1.55 ? 41 CYS A H 1 ATOM 88 H HA . CYS A 1 11 ? 3.176 9.547 9.308 1.00 1.28 ? 41 CYS A HA 1 ATOM 89 N N . ALA A 1 12 ? 3.100 11.816 8.076 1.00 1.02 ? 42 ALA A N 1 ATOM 90 C CA . ALA A 1 12 ? 2.733 13.115 7.537 1.00 1.24 ? 42 ALA A CA 1 ATOM 91 C C . ALA A 1 12 ? 3.959 13.756 6.884 1.00 1.26 ? 42 ALA A C 1 ATOM 92 O O . ALA A 1 12 ? 4.198 14.953 7.044 1.00 1.90 ? 42 ALA A O 1 ATOM 93 C CB . ALA A 1 12 ? 2.146 13.983 8.652 1.00 1.69 ? 42 ALA A CB 1 ATOM 94 H H . ALA A 1 12 ? 3.735 11.843 8.848 1.00 1.11 ? 42 ALA A H 1 ATOM 95 H HA . ALA A 1 12 ? 1.969 12.956 6.777 1.00 1.25 ? 42 ALA A HA 1 ATOM 96 N N . LYS A 1 13 ? 4.705 12.932 6.163 1.00 0.91 ? 43 LYS A N 1 ATOM 97 C CA . LYS A 1 13 ? 5.900 13.404 5.485 1.00 0.89 ? 43 LYS A CA 1 ATOM 98 C C . LYS A 1 13 ? 6.221 12.469 4.317 1.00 0.87 ? 43 LYS A C 1 ATOM 99 O O . LYS A 1 13 ? 7.366 12.391 3.876 1.00 1.64 ? 43 LYS A O 1 ATOM 100 C CB . LYS A 1 13 ? 7.052 13.563 6.479 1.00 1.07 ? 43 LYS A CB 1 ATOM 101 C CG . LYS A 1 13 ? 6.594 14.306 7.735 1.00 1.84 ? 43 LYS A CG 1 ATOM 102 C CD . LYS A 1 13 ? 6.605 15.820 7.511 1.00 2.12 ? 43 LYS A CD 1 ATOM 103 C CE . LYS A 1 13 ? 8.011 16.392 7.699 1.00 2.36 ? 43 LYS A CE 1 ATOM 104 N NZ . LYS A 1 13 ? 8.243 16.743 9.118 1.00 3.40 ? 43 LYS A NZ 1 ATOM 105 H H . LYS A 1 13 ? 4.504 11.960 6.038 1.00 1.13 ? 43 LYS A H 1 ATOM 106 H HA . LYS A 1 13 ? 5.680 14.394 5.086 1.00 1.02 ? 43 LYS A HA 1 ATOM 107 N N . CYS A 1 14 ? 5.188 11.784 3.848 1.00 0.73 ? 44 CYS A N 1 ATOM 108 C CA . CYS A 1 14 ? 5.346 10.858 2.739 1.00 0.64 ? 44 CYS A CA 1 ATOM 109 C C . CYS A 1 14 ? 4.047 10.851 1.931 1.00 0.82 ? 44 CYS A C 1 ATOM 110 O O . CYS A 1 14 ? 3.676 9.830 1.354 1.00 1.77 ? 44 CYS A O 1 ATOM 111 C CB . CYS A 1 14 ? 5.725 9.457 3.222 1.00 0.77 ? 44 CYS A CB 1 ATOM 112 S SG . CYS A 1 14 ? 7.517 9.193 3.481 1.00 0.88 ? 44 CYS A SG 1 ATOM 113 H H . CYS A 1 14 ? 4.260 11.853 4.212 1.00 1.31 ? 44 CYS A H 1 ATOM 114 H HA . CYS A 1 14 ? 6.174 11.229 2.137 1.00 0.65 ? 44 CYS A HA 1 ATOM 115 N N . ALA A 1 15 ? 3.391 12.002 1.916 1.00 1.42 ? 45 ALA A N 1 ATOM 116 C CA . ALA A 1 15 ? 2.141 12.142 1.188 1.00 1.83 ? 45 ALA A CA 1 ATOM 117 C C . ALA A 1 15 ? 2.394 12.917 -0.107 1.00 2.32 ? 45 ALA A C 1 ATOM 118 O O . ALA A 1 15 ? 1.455 13.401 -0.738 1.00 3.41 ? 45 ALA A O 1 ATOM 119 C CB . ALA A 1 15 ? 1.103 12.823 2.082 1.00 1.66 ? 45 ALA A CB 1 ATOM 120 H H . ALA A 1 15 ? 3.699 12.828 2.388 1.00 2.24 ? 45 ALA A H 1 ATOM 121 H HA . ALA A 1 15 ? 1.788 11.141 0.940 1.00 2.22 ? 45 ALA A HA 1 ATOM 122 N N . GLN A 1 16 ? 3.666 13.010 -0.465 1.00 2.11 ? 46 GLN A N 1 ATOM 123 C CA . GLN A 1 16 ? 4.054 13.717 -1.673 1.00 2.76 ? 46 GLN A CA 1 ATOM 124 C C . GLN A 1 16 ? 5.328 13.107 -2.259 1.00 2.33 ? 46 GLN A C 1 ATOM 125 O O . GLN A 1 16 ? 6.224 13.830 -2.693 1.00 3.09 ? 46 GLN A O 1 ATOM 126 C CB . GLN A 1 16 ? 4.237 15.211 -1.399 1.00 3.78 ? 46 GLN A CB 1 ATOM 127 C CG . GLN A 1 16 ? 3.717 16.051 -2.568 1.00 4.69 ? 46 GLN A CG 1 ATOM 128 C CD . GLN A 1 16 ? 2.845 17.205 -2.069 1.00 5.20 ? 46 GLN A CD 1 ATOM 129 O OE1 . GLN A 1 16 ? 3.057 18.362 -2.392 1.00 6.44 ? 46 GLN A OE1 1 ATOM 130 N NE2 . GLN A 1 16 ? 1.855 16.826 -1.266 1.00 4.86 ? 46 GLN A NE2 1 ATOM 131 H H . GLN A 1 16 ? 4.423 12.613 0.054 1.00 2.17 ? 46 GLN A H 1 ATOM 132 H HA . GLN A 1 16 ? 3.225 13.580 -2.368 1.00 3.14 ? 46 GLN A HA 1 ATOM 133 N N . GLY A 1 17 ? 5.370 11.783 -2.253 1.00 1.75 ? 47 GLY A N 1 ATOM 134 C CA . GLY A 1 17 ? 6.520 11.067 -2.779 1.00 1.97 ? 47 GLY A CA 1 ATOM 135 C C . GLY A 1 17 ? 7.535 10.773 -1.673 1.00 1.62 ? 47 GLY A C 1 ATOM 136 O O . GLY A 1 17 ? 8.210 11.679 -1.188 1.00 1.79 ? 47 GLY A O 1 ATOM 137 H H . GLY A 1 17 ? 4.637 11.202 -1.898 1.00 1.91 ? 47 GLY A H 1 ATOM 138 N N . CYS A 1 18 ? 7.611 9.502 -1.307 1.00 1.35 ? 48 CYS A N 1 ATOM 139 C CA . CYS A 1 18 ? 8.533 9.076 -0.267 1.00 1.11 ? 48 CYS A CA 1 ATOM 140 C C . CYS A 1 18 ? 9.836 9.861 -0.430 1.00 1.13 ? 48 CYS A C 1 ATOM 141 O O . CYS A 1 18 ? 10.516 9.737 -1.448 1.00 1.24 ? 48 CYS A O 1 ATOM 142 C CB . CYS A 1 18 ? 8.767 7.565 -0.302 1.00 1.29 ? 48 CYS A CB 1 ATOM 143 S SG . CYS A 1 18 ? 9.698 6.899 1.126 1.00 1.42 ? 48 CYS A SG 1 ATOM 144 H H . CYS A 1 18 ? 7.058 8.770 -1.707 1.00 1.48 ? 48 CYS A H 1 ATOM 145 H HA . CYS A 1 18 ? 8.058 9.309 0.687 1.00 0.90 ? 48 CYS A HA 1 ATOM 146 N N . ILE A 1 19 ? 10.146 10.650 0.588 1.00 1.10 ? 49 ILE A N 1 ATOM 147 C CA . ILE A 1 19 ? 11.356 11.454 0.570 1.00 1.15 ? 49 ILE A CA 1 ATOM 148 C C . ILE A 1 19 ? 12.440 10.756 1.394 1.00 1.17 ? 49 ILE A C 1 ATOM 149 O O . ILE A 1 19 ? 13.586 11.202 1.424 1.00 1.36 ? 49 ILE A O 1 ATOM 150 C CB . ILE A 1 19 ? 11.058 12.882 1.031 1.00 1.17 ? 49 ILE A CB 1 ATOM 151 C CG1 . ILE A 1 19 ? 11.321 13.040 2.530 1.00 1.76 ? 49 ILE A CG1 1 ATOM 152 C CG2 . ILE A 1 19 ? 9.633 13.294 0.653 1.00 1.43 ? 49 ILE A CG2 1 ATOM 153 C CD1 . ILE A 1 19 ? 10.304 12.247 3.353 1.00 1.83 ? 49 ILE A CD1 1 ATOM 154 H H . ILE A 1 19 ? 9.588 10.745 1.412 1.00 1.09 ? 49 ILE A H 1 ATOM 155 H HA . ILE A 1 19 ? 11.694 11.514 -0.465 1.00 1.19 ? 49 ILE A HA 1 ATOM 156 H HB . ILE A 1 19 ? 11.737 13.558 0.512 1.00 1.15 ? 49 ILE A HB 1 ATOM 157 N N . CYS A 1 20 ? 12.039 9.672 2.042 1.00 1.08 ? 50 CYS A N 1 ATOM 158 C CA . CYS A 1 20 ? 12.962 8.907 2.864 1.00 1.14 ? 50 CYS A CA 1 ATOM 159 C C . CYS A 1 20 ? 13.865 8.090 1.939 1.00 1.33 ? 50 CYS A C 1 ATOM 160 O O . CYS A 1 20 ? 13.418 7.122 1.325 1.00 2.33 ? 50 CYS A O 1 ATOM 161 C CB . CYS A 1 20 ? 12.223 8.021 3.869 1.00 1.14 ? 50 CYS A CB 1 ATOM 162 S SG . CYS A 1 20 ? 10.582 8.647 4.383 1.00 2.04 ? 50 CYS A SG 1 ATOM 163 H H . CYS A 1 20 ? 11.105 9.316 2.012 1.00 1.09 ? 50 CYS A H 1 ATOM 164 H HA . CYS A 1 20 ? 13.545 9.630 3.435 1.00 1.10 ? 50 CYS A HA 1 ATOM 165 N N . LYS A 1 21 ? 15.120 8.509 1.868 1.00 1.02 ? 51 LYS A N 1 ATOM 166 C CA . LYS A 1 21 ? 16.091 7.828 1.028 1.00 1.16 ? 51 LYS A CA 1 ATOM 167 C C . LYS A 1 21 ? 17.503 8.189 1.492 1.00 2.07 ? 51 LYS A C 1 ATOM 168 O O . LYS A 1 21 ? 17.792 9.353 1.765 1.00 3.52 ? 51 LYS A O 1 ATOM 169 C CB . LYS A 1 21 ? 15.831 8.136 -0.448 1.00 1.88 ? 51 LYS A CB 1 ATOM 170 C CG . LYS A 1 21 ? 15.441 6.868 -1.212 1.00 3.77 ? 51 LYS A CG 1 ATOM 171 C CD . LYS A 1 21 ? 13.922 6.692 -1.243 1.00 5.30 ? 51 LYS A CD 1 ATOM 172 C CE . LYS A 1 21 ? 13.438 6.346 -2.653 1.00 6.93 ? 51 LYS A CE 1 ATOM 173 N NZ . LYS A 1 21 ? 13.363 7.566 -3.488 1.00 7.35 ? 51 LYS A NZ 1 ATOM 174 H H . LYS A 1 21 ? 15.476 9.297 2.371 1.00 1.50 ? 51 LYS A H 1 ATOM 175 H HA . LYS A 1 21 ? 15.946 6.756 1.164 1.00 2.19 ? 51 LYS A HA 1 ATOM 176 N N . GLY A 1 22 ? 18.346 7.169 1.568 1.00 2.43 ? 52 GLY A N 1 ATOM 177 C CA . GLY A 1 22 ? 19.721 7.365 1.994 1.00 3.76 ? 52 GLY A CA 1 ATOM 178 C C . GLY A 1 22 ? 19.929 6.859 3.423 1.00 3.51 ? 52 GLY A C 1 ATOM 179 O O . GLY A 1 22 ? 21.047 6.876 3.935 1.00 4.62 ? 52 GLY A O 1 ATOM 180 H H . GLY A 1 22 ? 18.102 6.226 1.344 1.00 2.69 ? 52 GLY A H 1 ATOM 181 N N . ALA A 1 23 ? 18.834 6.421 4.027 1.00 2.54 ? 53 ALA A N 1 ATOM 182 C CA . ALA A 1 23 ? 18.882 5.912 5.387 1.00 2.27 ? 53 ALA A CA 1 ATOM 183 C C . ALA A 1 23 ? 17.830 4.814 5.553 1.00 1.89 ? 53 ALA A C 1 ATOM 184 O O . ALA A 1 23 ? 16.644 5.044 5.319 1.00 2.56 ? 53 ALA A O 1 ATOM 185 C CB . ALA A 1 23 ? 18.682 7.065 6.372 1.00 2.95 ? 53 ALA A CB 1 ATOM 186 H H . ALA A 1 23 ? 17.928 6.411 3.604 1.00 2.55 ? 53 ALA A H 1 ATOM 187 H HA . ALA A 1 23 ? 19.871 5.483 5.546 1.00 2.43 ? 53 ALA A HA 1 ATOM 188 N N . SER A 1 24 ? 18.301 3.643 5.957 1.00 1.90 ? 54 SER A N 1 ATOM 189 C CA . SER A 1 24 ? 17.415 2.509 6.158 1.00 2.18 ? 54 SER A CA 1 ATOM 190 C C . SER A 1 24 ? 17.182 2.285 7.653 1.00 1.83 ? 54 SER A C 1 ATOM 191 O O . SER A 1 24 ? 18.114 2.372 8.450 1.00 2.67 ? 54 SER A O 1 ATOM 192 C CB . SER A 1 24 ? 17.986 1.244 5.514 1.00 3.45 ? 54 SER A CB 1 ATOM 193 O OG . SER A 1 24 ? 19.308 0.964 5.967 1.00 3.97 ? 54 SER A OG 1 ATOM 194 H H . SER A 1 24 ? 19.266 3.464 6.146 1.00 2.47 ? 54 SER A H 1 ATOM 195 H HA . SER A 1 24 ? 16.483 2.779 5.661 1.00 2.51 ? 54 SER A HA 1 ATOM 196 N N . ASP A 1 25 ? 15.932 2.000 7.988 1.00 1.65 ? 55 ASP A N 1 ATOM 197 C CA . ASP A 1 25 ? 15.565 1.763 9.374 1.00 1.50 ? 55 ASP A CA 1 ATOM 198 C C . ASP A 1 25 ? 15.317 3.103 10.068 1.00 1.36 ? 55 ASP A C 1 ATOM 199 O O . ASP A 1 25 ? 14.852 3.141 11.207 1.00 1.73 ? 55 ASP A O 1 ATOM 200 C CB . ASP A 1 25 ? 16.685 1.041 10.125 1.00 2.00 ? 55 ASP A CB 1 ATOM 201 C CG . ASP A 1 25 ? 17.593 1.948 10.959 1.00 3.12 ? 55 ASP A CG 1 ATOM 202 O OD1 . ASP A 1 25 ? 17.127 2.675 11.849 1.00 3.59 ? 55 ASP A OD1 1 ATOM 203 O OD2 . ASP A 1 25 ? 18.847 1.889 10.659 1.00 4.69 ? 55 ASP A OD2 1 ATOM 204 H H . ASP A 1 25 ? 15.179 1.931 7.334 1.00 2.38 ? 55 ASP A H 1 ATOM 205 H HA . ASP A 1 25 ? 14.669 1.143 9.331 1.00 1.57 ? 55 ASP A HA 1 ATOM 206 N N . LYS A 1 26 ? 15.638 4.172 9.354 1.00 1.45 ? 56 LYS A N 1 ATOM 207 C CA . LYS A 1 26 ? 15.456 5.511 9.887 1.00 1.37 ? 56 LYS A CA 1 ATOM 208 C C . LYS A 1 26 ? 15.673 6.534 8.770 1.00 1.36 ? 56 LYS A C 1 ATOM 209 O O . LYS A 1 26 ? 16.345 6.245 7.780 1.00 1.83 ? 56 LYS A O 1 ATOM 210 C CB . LYS A 1 26 ? 16.356 5.730 11.104 1.00 1.85 ? 56 LYS A CB 1 ATOM 211 C CG . LYS A 1 26 ? 16.666 7.216 11.297 1.00 2.79 ? 56 LYS A CG 1 ATOM 212 C CD . LYS A 1 26 ? 15.552 7.910 12.084 1.00 3.13 ? 56 LYS A CD 1 ATOM 213 C CE . LYS A 1 26 ? 15.103 7.055 13.270 1.00 3.13 ? 56 LYS A CE 1 ATOM 214 N NZ . LYS A 1 26 ? 13.937 6.222 12.897 1.00 4.17 ? 56 LYS A NZ 1 ATOM 215 H H . LYS A 1 26 ? 16.016 4.133 8.428 1.00 1.91 ? 56 LYS A H 1 ATOM 216 H HA . LYS A 1 26 ? 14.425 5.589 10.230 1.00 1.18 ? 56 LYS A HA 1 ATOM 217 N N . CYS A 1 27 ? 15.092 7.708 8.965 1.00 1.13 ? 57 CYS A N 1 ATOM 218 C CA . CYS A 1 27 ? 15.214 8.776 7.987 1.00 1.13 ? 57 CYS A CA 1 ATOM 219 C C . CYS A 1 27 ? 15.456 10.088 8.735 1.00 1.18 ? 57 CYS A C 1 ATOM 220 O O . CYS A 1 27 ? 15.671 10.086 9.946 1.00 1.63 ? 57 CYS A O 1 ATOM 221 C CB . CYS A 1 27 ? 13.984 8.854 7.080 1.00 1.13 ? 57 CYS A CB 1 ATOM 222 S SG . CYS A 1 27 ? 12.514 9.629 7.845 1.00 2.12 ? 57 CYS A SG 1 ATOM 223 H H . CYS A 1 27 ? 14.548 7.936 9.773 1.00 1.24 ? 57 CYS A H 1 ATOM 224 H HA . CYS A 1 27 ? 16.067 8.527 7.356 1.00 1.40 ? 57 CYS A HA 1 ATOM 225 N N . SER A 1 28 ? 15.412 11.178 7.982 1.00 1.27 ? 58 SER A N 1 ATOM 226 C CA . SER A 1 28 ? 15.624 12.495 8.559 1.00 1.34 ? 58 SER A CA 1 ATOM 227 C C . SER A 1 28 ? 14.655 13.501 7.936 1.00 1.24 ? 58 SER A C 1 ATOM 228 O O . SER A 1 28 ? 14.827 14.710 8.086 1.00 1.62 ? 58 SER A O 1 ATOM 229 C CB . SER A 1 28 ? 17.069 12.957 8.361 1.00 1.85 ? 58 SER A CB 1 ATOM 230 O OG . SER A 1 28 ? 17.781 13.027 9.594 1.00 1.73 ? 58 SER A OG 1 ATOM 231 H H . SER A 1 28 ? 15.237 11.171 6.998 1.00 1.64 ? 58 SER A H 1 ATOM 232 H HA . SER A 1 28 ? 15.423 12.379 9.624 1.00 1.26 ? 58 SER A HA 1 ATOM 233 N N . CYS A 1 29 ? 13.657 12.965 7.248 1.00 1.16 ? 59 CYS A N 1 ATOM 234 C CA . CYS A 1 29 ? 12.660 13.802 6.602 1.00 1.45 ? 59 CYS A CA 1 ATOM 235 C C . CYS A 1 29 ? 11.322 13.593 7.314 1.00 1.36 ? 59 CYS A C 1 ATOM 236 O O . CYS A 1 29 ? 10.355 14.304 7.047 1.00 1.73 ? 59 CYS A O 1 ATOM 237 C CB . CYS A 1 29 ? 12.561 13.507 5.103 1.00 1.83 ? 59 CYS A CB 1 ATOM 238 S SG . CYS A 1 29 ? 13.167 11.854 4.604 1.00 1.17 ? 59 CYS A SG 1 ATOM 239 H H . CYS A 1 29 ? 13.524 11.981 7.130 1.00 1.28 ? 59 CYS A H 1 ATOM 240 H HA . CYS A 1 29 ? 12.999 14.832 6.708 1.00 1.58 ? 59 CYS A HA 1 ATOM 241 N N . CYS A 1 30 ? 11.310 12.614 8.207 1.00 1.05 ? 60 CYS A N 1 ATOM 242 C CA . CYS A 1 30 ? 10.107 12.303 8.960 1.00 1.24 ? 60 CYS A CA 1 ATOM 243 C C . CYS A 1 30 ? 10.517 11.925 10.385 1.00 1.51 ? 60 CYS A C 1 ATOM 244 O O . CYS A 1 30 ? 9.767 11.254 11.093 1.00 2.36 ? 60 CYS A O 1 ATOM 245 C CB . CYS A 1 30 ? 9.290 11.197 8.289 1.00 1.12 ? 60 CYS A CB 1 ATOM 246 S SG . CYS A 1 30 ? 9.033 11.417 6.491 1.00 1.38 ? 60 CYS A SG 1 ATOM 247 H H . CYS A 1 30 ? 12.101 12.040 8.419 1.00 0.88 ? 60 CYS A H 1 ATOM 248 H HA . CYS A 1 30 ? 9.495 13.205 8.960 1.00 1.66 ? 60 CYS A HA 1 ATOM 249 N N . ALA A 1 31 ? 11.705 12.372 10.764 1.00 1.20 ? 61 ALA A N 1 ATOM 250 C CA . ALA A 1 31 ? 12.223 12.090 12.091 1.00 1.73 ? 61 ALA A CA 1 ATOM 251 C C . ALA A 1 31 ? 11.666 13.115 13.081 1.00 2.22 ? 61 ALA A C 1 ATOM 252 O O . ALA A 1 31 ? 11.834 12.880 14.297 1.00 3.61 ? 61 ALA A O 1 ATOM 253 C CB . ALA A 1 31 ? 13.753 12.087 12.053 1.00 1.82 ? 61 ALA A CB 1 ATOM 254 O OXT . ALA A 1 31 ? 11.085 14.111 12.598 1.00 2.28 ? 61 ALA A OXT 1 ATOM 255 H H . ALA A 1 31 ? 12.309 12.917 10.182 1.00 1.11 ? 61 ALA A H 1 ATOM 256 H HA . ALA A 1 31 ? 11.878 11.096 12.378 1.00 2.37 ? 61 ALA A HA 1 HETATM 259 CD CD . CD D 2 . ? 7.339 9.639 6.077 1.00 1.08 ? 106 CD A CD 1
Spin
Binding residue
Residue numbering in mmCIF file:
A:
C7 C11 K13 C14 C20 C30
Residue numbering in PDB file:
A:
C37 C41 K43 C44 C50 C60
Receptor
Assembly ID: 1mrb_1
Stoichiometry type
: Monomer -A1
Assembly defined by
: Author
PDB ID
:
1mrb
Experimental method
: SOLUTION NMR
Resolution
: N/A
UniProt ID
:
P18055
PubMed ID
:
3418714
Ligand
Ligand ID
:
CD
Ligand name
: Cadmium(2+)
Biological relevance
: Irrelevant
Download
mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
Synonyms
Formula
2D structure
CD
Cadmium(2+)
1. Cd(2+); 2. Cadmium ion; 3. Cadmium(2+) ion; 4. Cadmium(ii) cation; 5. Cadmium, ion (cd2+); 6. Cd2+;
Cd
Binding affinity
Experimental affinity
N/A
Predicted affinity
N/A,
show detail
Software
Raw score
Predicted affinity
90% confidence interval
X-Score
N/A (log(Ka))
N/A
[N/A,N/A]
ITScore
0.0 (kcal/mol)
1.22 mM
[1.32 uM,1]
Vina
N/A (kcal/mol)
N/A
[N/A,N/A]
Surface area (A
2
)
Surface area of receptor
2485.12
Surface area of ligand
N/A
Surface area of complex
2485.12
Interface area
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)