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Yang Lab
Function Annotation for BL19552
3D View
Ligand Information
Binding Information
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Binding residues
Residue number in mmCIF file:
A25:
V103
B25:
R156 R161 K162 G163
C24:
S229 Q231
Residue number in PDB file:
125:
V103
225:
R156 R161 K162 G163
324:
S229 Q231
Receptor
Assembly ID: 1mec_1
Stoichiometry type
: Hetero 240-mer -A60B60C60D60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
1mec
Experimental method
: X-RAY DIFFRACTION
Resolution
: 3.2 Å
Other biological units from the same PDB ID
: 1mec_2,1mec_3,1mec_4,1mec_5,1mec_6
UniProt ID
:
P12296
PubMed ID
:
2155508
Ligand
Ligand ID
:
PO4
Ligand name
: Phosphate ion
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
Name
Synonyms
Formula
2D structure
PO4
Phosphate ion
1. Pi; 2. Phosphate; 3. Phosphate ions; 4. Orthophosphate; 5. Po4(3-); 6. Tetraoxophosphate(3-); 7. Tetraoxophosphate(v); 8. [po4](3-); 9. Tetraoxidophosphate(3-);
"O4 P"
Binding affinity
Experimental affinity
N/A
Predicted affinity
N/A,
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Software
Raw score
Predicted affinity
90% confidence interval
Xscore
N/A (log(Ka))
N/A
[N/A,N/A]
ITScore
N/A (kcal/mol)
N/A
[N/A,N/A]
vina
N/A (kcal/mol)
N/A
[N/A,N/A]
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
N/A
Surface area of complex(A
2
)
N/A
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)