Home
Browse
Browse biologically relevant interactions
Browse biologically irrelevant interactions
Browse structures with ligands or proteins only
Search
Ligand
Q-SITE
Download
Statistics
Help
News
Yang Lab
Function Annotation for BL170297
3D View
Ligand Information
Binding Information
The structure is too big. Click
here
to show 3D view, it may take a long time or fail, depending on the status of the server.
Binding residues
Residue numbering in mmCIF file:
A36:
C203
B36:
R55 A56 Y58 R68
B38:
Y19
B39:
M15 T17 W21
Residue numbering in PDB file:
A36:
C203
B36:
R55 A56 Y58 R68
B38:
Y19
B39:
M15 T17 W21
Receptor
Assembly ID: 4z92_1
Stoichiometry type
: Hetero 180-mer -A60B60C60
Assembly defined by
: complete icosahedral assembly
PDB ID
:
4z92
Experimental method
: X-RAY DIFFRACTION
Resolution
: 3.1 Å
Other biological units from the same PDB ID
: 4z92_2,4z92_3,4z92_4,4z92_5
UniProt ID
:
Q66578
PubMed ID
:
26581987
Ligand
Ligand ID
:
RNA
Ligand name
: Ribonucleic acid
Biological relevance
: Relevant
Download
mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
NUC pairing details
Name
RNA
D36:RNA
Ribonucleic acid
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
1428.65
Surface area of complex(A
2
)
1428.65
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)