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Yang Lab
Function Annotation for BL138111
3D View
Ligand Information
Binding Information
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Binding residues
Residue numbering in mmCIF file:
CC4:
R130 P134 K218 R220 H222 Y223
IC4:
Q11 E56 K57 E58
LA4:
M1 K6 M11 Q17 Q45 S46 V48 T72 I73 R74 K77 A136 R139 V140 R142 R143 R144 R145 C146 R149 H153
OB4:
W44 Y45 K52 K54 K55 Q84 Y89 R117 R119 F120 P121
SA4:
K9 T13 H14 F17 F20 Q21 V22 K23 F24 R26 R28 Q29 K31 T32 Y34 R37 K47 N49 P51 K52 Y53 R54 F55 V56 T57 N58 Q64 A71 G72 D73 I74 V75 A77 A78 Y80 G92 T94 N95 Y96 R152 T154 T155 G156 N157 R158 K185 Y200 H203 Y207 E215 S238 L239 K241 H244 A245 A246 I247 R248 A249 D250 T252 M253 K255 S256 K259 E260 P261 K265 R266 D295 D296 D297
UA4:
F19 R20 K21 K22 Y24 P26 L27 T28
Residue numbering in PDB file:
LE4:
M1 K6 M11 Q17 Q45 S46 V48 T72 I73 R74 K77 A136 R139 V140 R142 R143 R144 R145 C146 R149 H153
LI4:
Q11 E56 K57 E58
LQ4:
K9 T13 H14 F17 F20 Q21 V22 K23 F24 R26 R28 Q29 K31 T32 Y34 R37 K47 N49 P51 K52 Y53 R54 F55 V56 T57 N58 Q64 A71 G72 D73 I74 V75 A77 A78 Y80 G92 T94 N95 Y96 R152 T154 T155 G156 N157 R158 K185 Y200 H203 Y207 E215 S238 L239 K241 H244 A245 A246 I247 R248 A249 D250 T252 M253 K255 S256 K259 E260 P261 K265 R266 D295 D296 D297
LS4:
W44 Y45 K52 K54 K55 Q84 Y89 R117 R119 F120 P121
LU4:
F19 R20 K21 K22 Y24 P26 L27 T28
Le4:
R130 P134 K218 R220 H222 Y223
Receptor
Assembly ID: 4v3p_1
Stoichiometry type
: Hetero 1725-mer
Assembly defined by
: Author and software
PDB ID
:
4v3p
Experimental method
: ELECTRON MICROSCOPY
Resolution
: 34.0 Å
UniProt ID
:
Q5I7K3
Q8L805
Q5I7K6
Q5I7K4
A0A9R1H1R6
Q5I7L3
Q5I7L2
Q5I7L1
Q5I7K7
Q5I7L0
Q7X744
Q7XY20
Q8LNY6
W5AP46
Q8L804
Q5I7K5
Q5I7L4
Q5I7K9
Q5I7K8
D8L9P6
PubMed ID
:
25376914
Ligand
Ligand ID
:
RNA
Ligand name
: Ribonucleic acid
Biological relevance
: Relevant
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mmCIF Format
Receptor
Ligand
PDB Format
Receptor
Ligand
Ligand ID
NUC pairing details
Name
RNA
HA4:RNA
Ribonucleic acid
Binding affinity
Experimental affinity
N/A
Surface area
Surface area of receptor(A
2
)
N/A
Surface area of ligand(A
2
)
19817.22
Surface area of complex(A
2
)
19817.22
Interface area(A
2
)
N/A
Reference
Wei et al,
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions
,
Genomics, Proteomics & Bioinformatics
, 22(1), qzae001, 2024. (
PDF
)