Function Annotation for BL11639




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Receptor

Assembly ID: 1gvw_1

Stoichiometry type: Monomer -A1
Assembly defined by: Author and software
PDB ID: 1gvw
Experimental method: X-RAY DIFFRACTION
Resolution: 1.0 Å
UniProt ID: P11838
PubMed ID: 12083527

Ligand

Ligand ID: 0EM
Ligand name: N-(tert-butoxycarbonyl)-l-phenylalanyl-n-{(1s)-1-[(r)-hydroxy(2-{[(2s)-2-methylbutyl]amino}-2-oxoethyl)phosphoryl]-3-methylbutyl}-3-(1h-imidazol-3-ium-4-yl)-l-alaninamide
Biological relevance: Relevant

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Ligand ID Name SynonymsFormula 2D structure
0EM N-(tert-butoxycarbonyl)-l-phenylalanyl-n-{(1s)-1-[(r)-hydroxy(2-{[(2s)-2-methylbutyl]amino}-2-oxoethyl)phosphoryl]-3-methylbutyl}-3-(1h-imidazol-3-ium-4-yl)-l-alaninamide "C32 H52 N6 O7 P" N/A


Binding affinity

Experimental affinity Ki=110nM, from BindingMOAD
Ki=110nM, from PDBbind-CN
Predicted affinity 29.11 nM, show detail

Surface area (A2)

Surface area of receptor 13622.82
Surface area of ligand 906.23
Surface area of complex 13329.16
Interface area 599.94
Reference

  • Wei et al, Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand Interactions, Genomics, Proteomics & Bioinformatics, 22(1), qzae001, 2024. (PDF)