Information for ligand GDP

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sdf, pdb, mol, mol2


Ligand Name: Guanosine-5'-diphosphate


Synonyms

1 Gdp
2 Guanosine 5'-diphosphate
3 Guanosine diphosphate
4 Guanosine 5'-(trihydrogen diphosphate)

Chemical Component Summary

Formula "C10 H15 N5 O11 P2"
Molecular Weight 443.201
SMILES NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
InchI InChI=1S/C10H15N5O11P2/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(25-9)1-24-28(22,23)26-27(19,20)21/h2-3,5-6,9,16-17H,1H2,(H,22,23)(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1
InChIkey QGWNDRXFNXRZMB-UUOKFMHZSA-N
DrugBank Reference DB04315
ChEBI Reference 17552
PubChem Reference 5280316 135398619 8977

Reference

  • Wei et al, Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein–ligand InteractionsGenomics, Proteomics & Bioinformatics, 22(1), qzae001, 2024. (PDF)