Predicted models for unsolved Rfam families

For 263 Rfam families without known 3D structures, trRosettaRNA can predict structure models with high confidence (eRMSD < 4Å).
  • Download trRosettaRNA predictions for the 263 Rfam families: download (7.4M)
  • Details about these Rfam families (download the table)

  • Rfam ID eRMSD (Å) (click to download trRosettaRNA models) description
    RF00052 1.418 lin-4 microRNA precursor
    RF00094 1.654 Hepatitis delta virus ribozyme
    RF00104 3.233 mir-10 microRNA precursor family
    RF00131 2.692 mir-30 microRNA precursor
    RF00163 0.100 Hammerhead ribozyme (type I)
    RF00239 2.933 mir-124 microRNA precursor family
    RF00244 1.914 mir-26 microRNA precursor family
    RF00245 3.916 mir-19 microRNA precursor family
    RF00248 2.020 mir-148/mir-152 microRNA precursor family
    RF00249 3.658 mir-46/mir-47/mir-281 microRNA precursor family
    RF00251 1.586 mir-219 microRNA precursor family
    RF00257 3.779 mir-194 microRNA precursor family
    RF00258 2.273 mir-130 microRNA precursor family
    RF00385 0.100 Infectious bronchitis virus D-RNA
    RF00455 3.222 mir-15 microRNA precursor family
    RF00469 0.100 Hepatitis C stem-loop IV
    RF00489 2.356 ctRNA
    RF00490 2.924 S-element
    RF00510 3.820 Tombusvirus internal replication element (IRE)
    RF00556 0.851 Ribosomal protein L19 leader
    RF00622 3.246 Mammalian CPEB3 ribozyme
    RF00639 1.619 microRNA mir-515
    RF00641 2.577 microRNA mir-154
    RF00642 2.740 microRNA mir-23
    RF00649 2.390 microRNA mir-128
    RF00650 1.069 microRNA mir-153
    RF00653 3.066 microRNA mir-22
    RF00655 2.921 microRNA mir-28
    RF00658 0.446 microRNA mir-21
    RF00665 2.564 microRNA mir-290
    RF00666 1.914 mir-32 microRNA precursor family
    RF00667 2.161 microRNA mir-33
    RF00669 2.497 microRNA mir-96
    RF00670 2.952 mir-105 microRNA precursor family
    RF00671 1.469 microRNA mir-138
    RF00672 3.521 microRNA mir-190
    RF00675 3.242 microRNA mir-145
    RF00680 2.904 mir-224 microRNA precursor family
    RF00684 2.248 mir-122 microRNA precursor
    RF00687 1.728 microRNA mir-136
    RF00699 3.026 microRNA mir-134
    RF00701 2.838 microRNA mir-126
    RF00705 2.712 microRNA mir-202
    RF00707 2.102 microRNA mir-197
    RF00716 3.095 microRNA mir-3
    RF00718 2.163 mir-431 microRNA precursor family
    RF00720 2.710 microRNA mir-317
    RF00722 2.155 microRNA mir-451
    RF00725 0.652 mir-iab-4 microRNA precursor family
    RF00731 2.905 microRNA mir-155
    RF00735 1.275 microRNA mir-367
    RF00737 1.867 microRNA mir-322
    RF00741 3.113 microRNA mir-378
    RF00744 3.118 microRNA mir-361
    RF00749 3.057 microRNA mir-208
    RF00751 3.825 microRNA mir-12
    RF00752 3.973 microRNA mir-14
    RF00753 0.477 microRNA mir-503
    RF00755 1.375 microRNA mir-542
    RF00761 3.375 microRNA mir-340
    RF00763 3.941 microRNA mir-339
    RF00764 3.132 microRNA mir-191
    RF00767 2.056 microRNA mir-150
    RF00771 2.256 microRNA mir-185
    RF00781 1.902 microRNA mir-505
    RF00802 3.201 microRNA mir-207
    RF00808 3.136 microRNA mir-86
    RF00818 2.734 microRNA mir-318
    RF00829 1.393 microRNA mir-149
    RF00839 3.386 microRNA mir-452
    RF00840 0.237 microRNA mir-374
    RF00845 2.090 MIR158 microRNA precursor family
    RF00854 3.708 microRNA mir-5
    RF00858 1.623 microRNA mir-306
    RF00861 1.577 microRNA mir-488
    RF00862 0.413 microRNA mir-491
    RF00870 3.839 microRNA mir-423
    RF00877 2.532 microRNA mir-592
    RF00887 2.997 microRNA mir-802
    RF00890 2.190 microRNA mir-668
    RF00892 1.931 microRNA mir-551
    RF00897 1.681 microRNA mir-675
    RF00898 2.292 microRNA mir-242
    RF00917 2.707 microRNA mir-708
    RF00918 1.928 microRNA mir-872
    RF00928 3.309 microRNA mir-590
    RF00929 1.561 microRNA mir-574
    RF00933 3.589 microRNA mir-875
    RF00950 2.536 microRNA mir-927
    RF00951 2.495 microRNA mir-1302
    RF00966 3.342 mir-676 microRNA precursor family
    RF00983 3.280 microRNA mir-662
    RF00991 3.727 microRNA mir-599
    RF01003 3.550 microRNA mir-563
    RF01015 1.391 microRNA mir-885
    RF01033 3.920 microRNA mir-767
    RF01061 0.967 microRNA mir-548
    RF01070 1.578 SucA RNA motif
    RF01072 0.100 Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
    RF01097 3.943 Gag/pro ribosomal frameshift site
    RF01152 3.816 Small nucleolar RNA sR1
    RF01322 2.527 CRISPR RNA direct repeat element
    RF01324 3.622 CRISPR RNA direct repeat element
    RF01333 2.412 CRISPR RNA direct repeat element
    RF01340 1.954 CRISPR RNA direct repeat element
    RF01346 3.073 CRISPR RNA direct repeat element
    RF01363 3.680 CRISPR RNA direct repeat element
    RF01523 2.692 Trypanosomatid snoRNA TB10Cs1H2
    RF01525 3.783 Trypanosomatid snoRNA TB10Cs2H1
    RF01547 2.441 Trypanosomatid snoRNA TB6Cs1H3
    RF01550 3.228 Trypanosomatid snoRNA TB8Cs3H1
    RF01684 0.100 MALAT1-associated small cytoplasmic RNA/MEN beta RNA
    RF01688 1.046 Actino-pnp RNA
    RF01738 1.526 gabT RNA
    RF01739 1.724 Glutamine riboswitch
    RF01787 1.339 drz-agam-1 ribozyme
    RF01790 1.569 ribosomal frameshift site
    RF01793 3.442 ffh sRNA
    RF01803 0.409 Editing element of GABA-3 exon 9
    RF01835 0.322 ribosomal frameshift site
    RF01899 2.604 mir-2241 microRNA precursor family
    RF01902 1.476 microRNA MIR439
    RF01904 3.796 HOTAIR conserved region 1
    RF01938 3.082 microRNA mir-1251
    RF01988 1.515 Selenocysteine insertion sequence 2
    RF02025 2.895 microRNA mir-3017
    RF02094 2.270 mir-1803 microRNA precursor
    RF02096 0.100 mir-2973 microRNA precursor
    RF02097 1.811 mir-1662 microRNA precursor
    RF02261 3.619 MAT2A 3'UTR stem loop B
    RF02262 1.100 MAT2A 3'UTR stem loop C
    RF02263 2.974 MAT2A 3'UTR stem loop D
    RF02275 0.542 Hammerhead ribozyme HH9
    RF02276 1.486 Hammerhead ribozyme (type II)
    RF02592 2.403 S. pyogenes antisense RNA 392987
    RF02598 2.924 Epstein-Barr virus stable intronic sequence RNA 2
    RF02724 2.992 Small nucleolar RNA ZL2
    RF02914 0.406 DUF805b RNA
    RF02924 3.086 skipping-rope RNA
    RF02926 1.711 DUF2693-FD RNA
    RF02961 3.089 DUF3800-II RNA
    RF02968 3.512 DUF3800-IX RNA
    RF02990 2.225 gut-2 RNA
    RF02999 3.842 ivy-DE RNA
    RF03006 2.721 M23 RNA
    RF03058 0.820 sul1 RNA
    RF03075 2.145 DUF3800-VIII RNA
    RF03086 1.497 chrB-b RNA
    RF03101 3.132 RAGATH-31 RNA
    RF03130 3.961 L19-Flavobacteria ribosomal protein leader
    RF03132 3.729 L17-Actino-Proteobacteria ribosomal protein leader
    RF03134 2.127 S6-S18-Chlorobi ribosomal protein leader
    RF03138 1.867 S16-Flavobacteria ribosomal protein leader
    RF03141 1.825 S4-Flavobacteria ribosomal protein leader
    RF03143 3.938 S15-Halobacteria ribosomal protein leader
    RF03147 2.489 RAGATH-10 RNA
    RF03156 3.946 L31-Firmicutes ribosomal protein leader
    RF03158 3.621 L31-Actinobacteria ribosomal protein leader
    RF03160 0.100 type-P1 twister ribozyme
    RF03165 0.100 2dG-II purine riboswitch
    RF03167 0.100 c-di-GMP-I-GGC riboswitch
    RF03168 1.408 c-di-GMP-I-UAU riboswitch
    RF03186 1.460 mir-3689 microRNA precursor family
    RF03205 1.623 mir-1898 microRNA precursor family
    RF03209 2.089 MIR9657 microRNA precursor family
    RF03213 2.311 mir-5885 microRNA precursor family
    RF03215 2.045 mir-5360 microRNA precursor family
    RF03218 0.938 mir-3015 microRNA precursor family
    RF03229 3.248 mir-1297 microRNA precursor family
    RF03232 3.070 mir-6526 microRNA precursor family
    RF03240 1.919 MIR5534 microRNA precursor family
    RF03241 1.135 mir-1789 microRNA precursor family
    RF03242 2.491 mir-1397 microRNA precursor family
    RF03255 2.606 mir-2188 microRNA precursor family
    RF03258 1.791 mir-4 microRNA precursor family
    RF03265 1.578 mir-1460 microRNA precursor family
    RF03271 1.473 mir-1247 microRNA precursor family
    RF03277 3.291 mir-5886 microRNA precursor family
    RF03279 3.280 mir-1193 microRNA precursor family
    RF03280 0.947 mir-7583 microRNA precursor family
    RF03287 2.657 mir-5904 microRNA precursor family
    RF03292 0.882 mir-1301 microRNA precursor family
    RF03299 3.692 mir-1000 microRNA precursor family
    RF03304 1.200 mir-1744 microRNA precursor family
    RF03315 2.948 mir-723 microRNA precursor family
    RF03320 0.740 mir-1743 microRNA precursor family
    RF03322 1.769 mir-1641 microRNA precursor family
    RF03323 3.061 mir-3613 microRNA precursor family
    RF03325 3.267 mir-4872 microRNA precursor family
    RF03334 3.704 MIR391 microRNA precursor family
    RF03342 3.432 mir-1467 microRNA precursor family
    RF03354 0.985 mir-459 microRNA precursor family
    RF03357 1.918 mir-1842 microRNA precursor family
    RF03359 3.578 mir-1729 microRNA precursor family
    RF03362 1.003 mir-9436 microRNA precursor family
    RF03364 2.725 mir-427 microRNA precursor family
    RF03370 2.127 mir-2566 microRNA precursor family
    RF03372 1.274 mir-5918 microRNA precursor family
    RF03384 3.993 mir-7180 microRNA precursor family
    RF03387 2.278 mir-1902 microRNA precursor family
    RF03405 3.559 mir-3200 microRNA precursor family
    RF03407 2.022 MIR531 microRNA precursor family
    RF03408 3.350 mir-5890 microRNA precursor family
    RF03410 3.356 mir-1891 microRNA precursor family
    RF03414 1.942 mir-670 microRNA precursor family
    RF03418 2.076 mir-3198 microRNA precursor family
    RF03431 0.100 mir-4657 microRNA precursor family
    RF03436 3.507 mir-759 microRNA precursor family
    RF03443 2.563 mir-2131 microRNA precursor family
    RF03445 2.779 mir-7552 microRNA precursor family
    RF03456 3.279 mir-724 microRNA precursor family
    RF03462 2.681 mir-4677 microRNA precursor family
    RF03465 3.486 MIR9666 microRNA precursor family
    RF03469 0.605 mir-1179 microRNA precursor family
    RF03470 1.554 mir-571 microRNA precursor family
    RF03480 3.633 mir-1284 microRNA precursor family
    RF03493 3.121 mir-1281 microRNA precursor family
    RF03508 3.664 mir-970 microRNA precursor family
    RF03510 3.556 mir-3660 microRNA precursor family
    RF03518 3.868 mir-1893 microRNA precursor family
    RF03520 3.645 mir-3059 microRNA precursor family
    RF03525 3.344 mir-1343 microRNA precursor family
    RF03544 3.690 Insect-Specific Flavivirus 3' UTR repeats Ra
    RF03567 3.238 MIR8024 microRNA precursor family
    RF03568 0.499 mir-3204 microRNA precursor family
    RF03630 1.600 mir-2818 microRNA precursor family
    RF03653 3.259 mir-971 microRNA precursor family
    RF03657 2.715 MIR6145 microRNA precursor family
    RF03659 3.801 MIR2871 microRNA precursor family
    RF03663 2.140 mir-5911 microRNA precursor family
    RF03665 0.100 MIR4359 microRNA precursor family
    RF03668 1.994 mir-1788 microRNA precursor family
    RF03673 1.671 mir-2822 microRNA precursor family
    RF03691 1.568 mir-2765 microRNA precursor family
    RF03694 3.232 mir-266 microRNA precursor family
    RF03695 2.122 MIR6151 microRNA precursor family
    RF03697 1.249 mir-722 microRNA precursor family
    RF03698 3.112 mir-2861 microRNA precursor family
    RF03705 0.100 mir-1278 microRNA precursor family
    RF03716 0.100 mir-7131 microRNA precursor family
    RF03747 2.043 mir-4536 microRNA precursor family
    RF03760 0.100 mir-2041 microRNA precursor family
    RF03779 3.930 mir-1805 microRNA precursor family
    RF03780 2.304 mir-3389 microRNA precursor family
    RF03782 0.867 mir-3661 microRNA precursor family
    RF03789 2.791 MIR5269 microRNA precursor family
    RF03790 2.462 MIR8008 microRNA precursor family
    RF03800 3.452 mir-4477 microRNA precursor family
    RF03803 2.256 MIR1886 microRNA precursor family
    RF03813 0.452 MIR8041 microRNA precursor family
    RF03833 0.100 mir-5928 microRNA precursor family
    RF03838 1.280 MIR8032 microRNA precursor family
    RF03863 0.826 mir-1258 microRNA precursor family
    RF03869 3.776 mir-2834 microRNA precursor family
    RF03872 1.379 MIR6426 microRNA precursor family
    RF03900 0.100 mir-9242 microRNA precursor family
    RF03904 1.932 MIR7991 microRNA precursor family
    RF03912 0.100 mir-4659 microRNA precursor family
    RF03921 3.173 MIR860 microRNA precursor family
    RF03969 2.077 mir-622 microRNA precursor family
    RF03984 3.556 MIR2933 microRNA precursor family
    RF04021 3.803 mir-3492 microRNA precursor family
    RF04029 1.540 mir-8521 microRNA precursor family