The training datasets

 The whole training datasets:
  • training dataset (2.4 GB, the NPZ files storing the MSAs, SSs, and the extracted geometries)

    The five training subsets for testing RNA-Puzzles targets and the corresponding pretrained models:
  • Before 2010-12 list model
  • Before 2013-07 list model
  • Before 2016-07 list model
  • Before 2017-01 list model
  • Before 2019-04 list model

    The training set for trRosettaRNA2: Download

    The benchmark datasets
  • 30 independent RNAs (36.5 MB)
  • 20 RNA-Puzzles targets (1.65 MB)
  • 12 blind test targets from CASP15 (4.9 MB)
  • 3 blind test targets from RNA-Puzzles (0.29 MB)
  • Benchmark datasets for trRosettaRNA2 (675 MB; the CASP native structures can be downloaded from CASP15 and CASP16 official websites）

    Reference

  • Wang et al, The trRosettaRNA server for RNA structure prediction, Nature Protocols (2026). (PDF)
  • Wang et al, Predicting RNA 3D structure and conformers using a pre-trained secondary structure model and structure-aware attention, Nature Machine Intelligence (2026). (PDF)
  • Wang et al, trRosettaRNA: automated prediction of RNA 3D structure with transformer network, Nature Communications, 14: 7266 (2023). (PDF)