This folder includes example input and output for the major scripts in the trRosetta package:

generate_msa: 
generate_msa.py, input is seq.fasta, output is seq.a3m

search_template: 
search_template.py, input is seq.a3m, output is temp.npz

predict: 
predict.py, input is seq.a3m, temp.npz (optional), output is seq.npz

trRosetta: 
trRosetta.py, input is seq.fasta, seq.npz, output is model.pdb, cscore.txt

run_trRosetta: 
run_trRosetta.py, input is seq.fasta, seq.npz, output is model1.pdb, cscore.txt
