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Benchmark Datasets
The benchmark datasets in RNAcontact can be downloaded at here.
Training set (TR221)
Test set (TE80)
Dataset from PLMC (W19)
(
PLMC website
)
Dataset from DIRECT (J6)
(
DIRECT website
)
The predicted contacts used in structure prediction in our cases can be downloaded at here.
Contacts_used_in_structure prediction cases
Reference:
S. Sun, W. Wang, Z. Peng, J. Yang, RNA inter-nucleotide 3D closeness prediction by deep residual neural networks,
Bioinformatics
, 37:1093-1098, 2020.